BAC Information

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BAC

Clone NameB6Ng01-011A22
Chromosome11 (Build37)
Map Location 116,560,452 - 116,699,874
singlet/doubletdoublet
Overlap geneLOC634720, BC018473, St6galnac1, Mxra7, Jmjd6
Upstream geneGrb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2
Downstream gene1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A22.bB6Ng01-011A22.g
ACCDH846548DH846549
length1,0541,044
definitionDH846548|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A22, 5' end.DH846549|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,560,452 - 116,561,523)(116,698,816 - 116,699,874)
sequence
gaattcaggacttctgctctctccggtcagccccacttgctccagcccaa
agatttattattattattattattattattattattattaagtgtagctg
tcttcagacacaccagaagagggcatcagatctcattacaggtagttgtg
agccaccatgtggttgctgggatttgaactcaggaccttcggaagaacag
tcagtgctcttaattactaagccatctctccagcccccacccacccccct
ctttctgtccgtgtgtgtctttttgtctttctttttctcacaacacaggg
tctctctaggcctggctgagtattgttttggtttttttttgtttttgttt
ttgtttttaaactttggcctgtttataatttttaatttttaaaggtattt
taattacaaagttaaaaagaaatggagaacccaacggtgccataaccata
gaatggaatattatccagccttaaaggcaaagtctggggccagagagaca
gctccgagactaggagcgtgtcccagtcccagcactcatgttgggtggct
ccaaagggcctgttactccagctctggatctgacacactcgcatgcacat
acccacacacagatgcacatacttaaaaataccaccccatccccttcttt
ttttttcaagacagggtttctctgtgtatccctggctgtcctagaactga
ctctgtagaccaggatggctttgaatacagctctgcctgcctctgtctcc
ccagtgctggaattaaaggtgtgtgccagcttaaaaataaatcttgaaga
aggaagaagagagaagaagagagatgatgaagagagagagagagaaaatg
ggtgctggagaaatggctcacccttgctgctcttgcagaagatagggttc
tgtttctagaacctgtatcatgagcttatagtctacctagctccagttca
aaagatcaggacacctctttagccacagagggcactcactgtatgcagca
atgtccacacatcaatggacacatgcacgtaccataaataaaacactgaa
caca
gaattcttgttttgtgatttcagttttgagggttttttgtttctgttttt
tttccaaaacagggtttctctgtgtcgccccggctttcctggaccccagt
ctgtagaccaggctggcctcgaatgctggattaaaggcatggaacaccac
gtctggccttttttttttcttttttcctttttttttttgtttttgagtca
gggtctctgtacataccctggctgtcgtggaactcgccattcaggccagg
ctggccttagaccagcagacattcacctgaagctgcctcccaggtgctgg
cagtaaagggcttttggttttggtttgtgtttttgagagtctcacatcct
ggctgtggctgtcctggaactctgtaaaccaggctgctcttgaacccacc
gagatctgcctgcctctgcttccagagcgctgggattacaggtgtgcatc
accacaccctgctaggtcttttctatcttaacattttggtttgcagtatc
tctataaagaacattgttcctctgtagacaaacttgacagtgaattttgt
tgtttagaagagaggaagtgctcttggctaccgtgctctctctccagatg
tttctggatgttccgttgacttattacgtgtgtgcctgtacatctgagta
tttactgtagcacacgcggaggcagaaagtgacttgagggagttggttct
ctcctaccaagtgagccccagggattgagcggaggtcctgaagtttagtg
tcaagtccttgtcccggccctgaattgtttttcctccctgtgtccagtgt
gaatctgggtcagaaggtgatgggacgacacaccgcaggaagaagaggag
aacctgcagcatggtgggaaatggggacactaccttcccaggatgactgt
gtgagcaagagcgcagctcctcagtgaccacatgtggcgctgtctgtgcc
aggatatgctcgcagcagctgggggctgacccagaagaacaggacactca
gatgcagtgtagtacgtgtcagtggcttttctctgtgtcatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116560452_116561523
seq2: B6Ng01-011A22.b_48_1101

seq1  GAATTCAGGACTTCTGCTCTCTCCGGTCAGCCCCACTTGCTCCAGCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACTTCTGCTCTCTCCGGTCAGCCCCACTTGCTCCAGCCCAA  50

seq1  AGATTTATTATTATTATTATTATTATTATTATTATTATTAAGTGTAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTATTATTATTATTATTATTATTATTATTATTAAGTGTAGCTG  100

seq1  TCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGGTAGTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGGTAGTTGTG  150

seq1  AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAG  200

seq1  TCAGTGCTCTTAATTACTAAGCCATCTCTCCAGCCCCCACCCACCCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTTAATTACTAAGCCATCTCTCCAGCCCCCACCCACCCCCCT  250

seq1  CTTTCTGTCCGTGTGTGTCTTTTTGTCTTTCTTTTTCTCACAACACAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCCGTGTGTGTCTTTTTGTCTTTCTTTTTCTCACAACACAGGG  300

seq1  TCTCTCTAGGCCTGGCTGAGTATTGTTTTGGTTTTTTTTTGTTTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAGGCCTGGCTGAGTATTGTTTTGGTTTTTTTTTGTTTTTGTTT  350

seq1  TTGTTTTTAAACTTTGGCCTGTTTATAATTTTTAATTTTTAAAGGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAAACTTTGGCCTGTTTATAATTTTTAATTTTTAAAGGTATTT  400

seq1  TAATTACAAAGTTAAAAAGAAATGGAGAACCCAACGGTGCCATAACCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACAAAGTTAAAAAGAAATGGAGAACCCAACGGTGCCATAACCATA  450

seq1  GAATGGAATATTATCCAGCCTTAAAGGCAAAGTCTGGGGCCAGAGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAATATTATCCAGCCTTAAAGGCAAAGTCTGGGGCCAGAGAGACA  500

seq1  GCTCCGAGACTAGGAGCGTGTCCCAGTCCCAGCACTCATGTTGGGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGAGACTAGGAGCGTGTCCCAGTCCCAGCACTCATGTTGGGTGGCT  550

seq1  CCAAAGGGCCTGTTACTCCAGCTCTGGATCTGACACACTCGCATGCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGCCTGTTACTCCAGCTCTGGATCTGACACACTCGCATGCACAT  600

seq1  ACCCACACACAGATGCACATACTTAAAAATACCACCCCATCCCCTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACAGATGCACATACTTAAAAATACCACCCCATCCCCTTCTTT  650

seq1  TTTTTTCAAGACAGGGTTTCTCTGTGTATCCCTGGCTGTCCTAGAACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAAGACAGGGTTTCTCTGTGTATCCCTGGCTGTCCTAGAACTGA  700

seq1  CTCTGTAGACCAGGATGGCTTTGAATACAGCTCTGCCTGCCTCTGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGATGGCTTTGAATACAGCTCTGCCTGCCTCTGTCTCC  750

seq1  CCAGTGCTGGAATTAAAGGTGTGTGCCAGCTTAAAAATAAATCTTGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTGGAATTAAAGGTGTGTGCCAGCTTAAAAATAAATCTTGAAGA  800

seq1  AGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  850
      ||||||||||         |||||||||   ||| || |||| |||   |
seq2  AGGAAGAAGA--------GAGAAGAAGA--GAGATGATGAAG-AGAGAGA  839

seq1  GAAGAAAAATGGGTGCTGGAGAAATGGCTCAACCCTTGCTGCTCTTGCAG  900
      ||   ||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGAGAAAATGGGTGCTGGAGAAATGGCTC-ACCCTTGCTGCTCTTGCAG  888

seq1  AAGATAGGGGTTCTGTTTCTAGAACCTGTATCAGGAAGCTTATAGTCTAC  950
      |||||| |||||||||||||||||||||||||| | ||||||||||||||
seq2  AAGATA-GGGTTCTGTTTCTAGAACCTGTATCATG-AGCTTATAGTCTAC  936

seq1  CTAGCTCCAGTTCCAAAAGATCA-GACACCCTCTTTTAGCCACAGAGGGC  999
      |||||||||||| |||||||||| |||| |||| ||||||||||||||||
seq2  CTAGCTCCAGTT-CAAAAGATCAGGACA-CCTC-TTTAGCCACAGAGGGC  983

seq1  ACTCACTGTATGCAAGCAATGTCCACACAACCAAATGGACACATGCAACG  1049
      ||||||||||||| ||||||||||||||| |  ||||||||||||| |||
seq2  ACTCACTGTATGC-AGCAATGTCCACACATC--AATGGACACATGC-ACG  1029

seq1  TACACATAAATAAAACAC---ACACA  1072
      ||| ||||||||||||||   |||||
seq2  TAC-CATAAATAAAACACTGAACACA  1054

seq1: chr11_116698816_116699874
seq2: B6Ng01-011A22.g_66_1109 (reverse)

seq1  GACATGACCACAGAGAAAAGCCACTGTACCACGTACTACCAACTCCCATC  50
      ||||||| ||||||||||||||||||   ||||||||||  |||  ||||
seq2  GACATGA-CACAGAGAAAAGCCACTG--ACACGTACTAC--ACT-GCATC  44

seq1  TGAGTGTCCTTGTTC-TCTGGGTGTCAGCCCCCCAAGCCTGGCTGCGAGC  99
      ||||||||| ||||| |||||  ||||||||||  |||   |||||||||
seq2  TGAGTGTCC-TGTTCTTCTGG--GTCAGCCCCC--AGC--TGCTGCGAGC  87

seq1  ATATCCTGGCACAGACAGCGGCCACATGTGGTCACCTGGAGGAGCTGCGC  149
      ||||||||||||||||||| |||||||||||||||   ||||||||||||
seq2  ATATCCTGGCACAGACAGC-GCCACATGTGGTCAC--TGAGGAGCTGCGC  134

seq1  TCTTTGCTCACACAGTCATCCTGGG-AGGTAGTGTCCCCATTTCCCACCA  198
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TC-TTGCTCACACAGTCATCCTGGGAAGGTAGTGTCCCCATTTCCCACCA  183

seq1  TGCTGCAGGTTCTCCTCTTCTTCCTGCGGTGTGTCGTCCCATCACCTTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGGTTCTCCTCTTCTTCCTGCGGTGTGTCGTCCCATCACCTTCT  233

seq1  GACCCAGATTCACACTGGACACAGGGAGGAAAAACAATTCAGGGCCGGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGATTCACACTGGACACAGGGAGGAAAAACAATTCAGGGCCGGGA  283

seq1  CAAGGACTTGACACTAAACTTCAGGACCTCCGCTCAATCCCTGGGGCTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACTTGACACTAAACTTCAGGACCTCCGCTCAATCCCTGGGGCTCA  333

seq1  CTTGGTAGGAGAGAACCAACTCCCTCAAGTCACTTTCTGCCTCCGCGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGGAGAGAACCAACTCCCTCAAGTCACTTTCTGCCTCCGCGTGT  383

seq1  GCTACAGTAAATACTCAGATGTACAGGCACACACGTAATAAGTCAACGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTAAATACTCAGATGTACAGGCACACACGTAATAAGTCAACGGA  433

seq1  ACATCCAGAAACATCTGGAGAGAGAGCACGGTAGCCAAGAGCACTTCCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGAAACATCTGGAGAGAGAGCACGGTAGCCAAGAGCACTTCCTC  483

seq1  TCTTCTAAACAACAAAATTCACTGTCAAGTTTGTCTACAGAGGAACAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAACAACAAAATTCACTGTCAAGTTTGTCTACAGAGGAACAATG  533

seq1  TTCTTTATAGAGATACTGCAAACCAAAATGTTAAGATAGAAAAGACCTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATAGAGATACTGCAAACCAAAATGTTAAGATAGAAAAGACCTAG  583

seq1  CAGGGTGTGGTGATGCACACCTGTAATCCCAGCGCTCTGGAAGCAGAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTGGTGATGCACACCTGTAATCCCAGCGCTCTGGAAGCAGAGGC  633

seq1  AGGCAGATCTCGGTGGGTTCAAGAGCAGCCTGGTTTACAGAGTTCCAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATCTCGGTGGGTTCAAGAGCAGCCTGGTTTACAGAGTTCCAGGA  683

seq1  CAGCCACAGCCAGGATGTGAGACTCTCAAAAACACAAACCAAAACCAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGCCAGGATGTGAGACTCTCAAAAACACAAACCAAAACCAAAA  733

seq1  GCCCTTTACTGCCAGCACCTGGGAGGCAGCTTCAGGTGAATGTCTGCTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTACTGCCAGCACCTGGGAGGCAGCTTCAGGTGAATGTCTGCTGG  783

seq1  TCTAAGGCCAGCCTGGCCTGAATGGCGAGTTCCACGACAGCCAGGGTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGCCAGCCTGGCCTGAATGGCGAGTTCCACGACAGCCAGGGTATG  833

seq1  TACAGAGACCCTGACTCAAAAACAAAAAAAAAAAGGAAAAAAGAAAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGACCCTGACTCAAAAACAAAAAAAAAAAGGAAAAAAGAAAAAAA  883

seq1  AAAGGCCAGACGTGGTGTTCCATGCCTTTAATCCAGCATTCGAGGCCAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGACGTGGTGTTCCATGCCTTTAATCCAGCATTCGAGGCCAGC  933

seq1  CTGGTCTACAGACTGGGGTCCAGGAAAGCCGGGGCGACACAGAGAAACCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGACTGGGGTCCAGGAAAGCCGGGGCGACACAGAGAAACCC  983

seq1  TGTTTTGGAAAAAAAACAGAAACAAAAAACCCTCAAAACTGAAATCACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGAAAAAAAACAGAAACAAAAAACCCTCAAAACTGAAATCACAA  1033

seq1  AACAAGAATTC  1059
      |||||||||||
seq2  AACAAGAATTC  1044