BAC Information

Click to search

BAC

Clone NameB6Ng01-011G10
Chromosome11 (Build37)
Map Location 25,954,136 - 25,955,299
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042328
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011G10.bB6Ng01-011G10.g
ACCDH846797DH846798
length1,2331,144
definitionDH846797|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G10, 5' end.DH846798|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtttagctctgctgcccatttttaacagggttacttggttc
tctggggagtaacttcttgagttctttgtatatattgtatattagccctc
catcagttgtaggattgattggtaaacatcttttcccaatctgttggttg
gcatttagccctgctgagtgtcctttgacttatagaagttttgacatttt
atgaggttccatttgtcggtttttgactttagagcataagtcattggtgt
tctgttcaggaaatttctccctgtgcccagatgttcaaggctttccccca
cttcttcttccattagattcagtgtatctggttttatgtggaggtccttg
atccacttggacttgagctttgtatagggagataagaatgaatcaatttg
cattcttctacatgctgaccgccagttgaaacagcaacatttgttgaaaa
tgctgtttttccactggatagttttagctcctttgtcaaagatcaagtga
ccatatgtgtgtgggttcatttctggtcttcagttctattccattgatct
gcctgcctgttattttaccaataccatgcagtttttattgctactgctct
gtgatacagcttgaggtcagggatggtgattcccccagaaattcttttat
tgttgaggatagttttcgggttttttgttattccatatgaatttgagaat
tgccgtttctaactctatgaagaattgagttggaattttgatggggatgg
cactgaatctgtagattgcttttggcaagatggccatttttactatatta
atcctgtcaatccatgaccatgggaatctttccatcttctgaggtcttct
ttatttttcttttttagagacctgaagttcttgtcatactgatatttcac
tttttggttggagtcaccaccaagatattttatattgtttgtaactaatg
ttaaaagcattgtttccctaatttctttctcagctcatttaatcctttga
gttagaggaaggctactgcttcgttttagtatttttatatccagtcactt
tcctgagttgattatcagttgtagagttcttctgggtgaattttgggtca
tctaatggtactatcatatacattgcaaatgaagatatttggacactact
ctgtcaatctgagtcctggaccttcatagtgtctaattcttggggagtac
tctgagctctattaagtattagttagcgcttct
gaattcctttgcatattccacagaaccaccacttagaagggaatccatga
ctttaaggctgttttgtaacctccagtaaacagagagaatgaggatggct
cctgtggtcctccatctctgaggttcttggatttctgtagtttgtagtct
tcatgctccaaggaagagtagacacacaaggagctgttttaaatattttt
gaacccacagaaattgctttccggtgttcctttattcggctttctgccta
cctttgctgtacactcaaccccctcttcctaatcttaggcctgtgtgcct
gcatcagtaccttcagtcctcttgtctctatggagcaggatgacctgaga
ggatggaaacggagaaggattaagaaaacgacaacctcctgcaggtgtca
tgggtgtcataggaggtttgcccttaagaatttgtgaaacagtagtcagt
ggagcagattgagaacgtcacaccaatgctcccttgcctctggaacagcc
tttattactgcagggaatatcagcttattgtgaggactaggatcaactgg
ctcagggccggaaatcttgtgaccagagccctgacactgcctatggccaa
gaagtcttaggactgatgccgggagacacgatcagctgcttgtgattccc
attccacgtcaggctcagcacactctcccctaattagagcctgtgtcctg
tttctaggtgacaggcagtgatagaactctctgataggataccctctctc
cattcatcacaaagcacgtaggttacagctgatctaacagagaggcagac
atgatatgttgtccatggaactgtcacttgtgatgtatgagttacacaag
tcttggtgttttagggactcctatgaagtgtcagatcaataaagccatca
aaacttagagaaagggacacaaggaatatattaggcactgctcagtttct
atgcactgtgatgtcgagcagaattcagacagagaccacaaggttgagtt
gccattttcaccaaagaaactgctataaaacatggatttgggttttaatc
tcaactctaatgtcttggagtctttaccataaataaaggctgcatgaatc
aacagaagtgcaccttctaactgtacaatgcctctcgcatcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25954136_25955299
seq2: B6Ng01-011G10.g_67_1210

seq1  GAATTCCTTTGCATATTCCACAGAACCACCACTTAGAAGGGAATCCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGCATATTCCACAGAACCACCACTTAGAAGGGAATCCATGA  50

seq1  CTTTAAGGCTGTTTTGTAACCTCCAGTAAACAGAGAGAATGAGGATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGCTGTTTTGTAACCTCCAGTAAACAGAGAGAATGAGGATGGCT  100

seq1  CCTGTGGTCCTCCATCTCTGAGGTTCTTGGATTTCTGTAGTTTGTAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTCCTCCATCTCTGAGGTTCTTGGATTTCTGTAGTTTGTAGTCT  150

seq1  TCATGCTCCAAGGAAGAGTAGACACACAAGGAGCTGTTTTAAATATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCCAAGGAAGAGTAGACACACAAGGAGCTGTTTTAAATATTTTT  200

seq1  GAACCCACAGAAATTGCTTTCCGGTGTTCCTTTATTCGGCTTTCTGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACAGAAATTGCTTTCCGGTGTTCCTTTATTCGGCTTTCTGCCTA  250

seq1  CCTTTGCTGTACACTCAACCCCCTCTTCCTAATCTTAGGCCTGTGTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTGTACACTCAACCCCCTCTTCCTAATCTTAGGCCTGTGTGCCT  300

seq1  GCATCAGTACCTTCAGTCCTCTTGTCTCTATGGAGCAGGATGACCTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTACCTTCAGTCCTCTTGTCTCTATGGAGCAGGATGACCTGAGA  350

seq1  GGATGGAAACGGAGAAGGATTAAGAAAACGACAACCTCCTGCAGGTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAAACGGAGAAGGATTAAGAAAACGACAACCTCCTGCAGGTGTCA  400

seq1  TGGGTGTCATAGGAGGTTTGCCCTTAAGAATTTGTGAAACAGTAGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCATAGGAGGTTTGCCCTTAAGAATTTGTGAAACAGTAGTCAGT  450

seq1  GGAGCAGATTGAGAACGTCACACCAATGCTCCCTTGCCTCTGGAACAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGATTGAGAACGTCACACCAATGCTCCCTTGCCTCTGGAACAGCC  500

seq1  TTTATTACTGCAGGGAATATCAGCTTATTGTGAGGACTAGGATCAACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACTGCAGGGAATATCAGCTTATTGTGAGGACTAGGATCAACTGG  550

seq1  CTCAGGGCCGGAAATCTTGTGACCAGAGCCCTGACACTGCCTATGGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGCCGGAAATCTTGTGACCAGAGCCCTGACACTGCCTATGGCCAA  600

seq1  GAAGTCTTAGGACTGATGCCGGGAGACACGATCAGCTGCTTGTGATTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTAGGACTGATGCCGGGAGACACGATCAGCTGCTTGTGATTCCC  650

seq1  ATTCCACGTCAGGCTCAGCACACTCTCCCCTAATTAGAGCCTGTGTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACGTCAGGCTCAGCACACTCTCCCCTAATTAGAGCCTGTGTCCTG  700

seq1  TTTCTAGGTGACAGGCAGTGATAGAACTCTCTGATAGGATACCCTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGTGACAGGCAGTGATAGAACTCTCTGATAGGATACCCTCTCTC  750

seq1  CATTCATCACAAAGCACGTAGGTTACAGCTGATCTAACAGAGAGGCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCACAAAGCACGTAGGTTACAGCTGATCTAACAGAGAGGCAGAC  800

seq1  ATGATATGTTGTCCATGGAACTGTCACTTGTGATGTATGAGTTACACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGTTGTCCATGGAACTGTCACTTGTGATGTATGAGTTACACAAG  850

seq1  TCTTGGTGTTTTAGGGACTCCTATGAAGTGTCAGATCAAATAAAGCCATC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTTGGTGTTTTAGGGACTCCTATGAAGTGTCAGATC-AATAAAGCCATC  899

seq1  AAAAACTTAGAGAAAGGGACACAAGGAATATATTAGGCACTGCCCAGTTT  950
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -AAAACTTAGAGAAAGGGACACAAGGAATATATTAGGCACTGCTCAGTTT  948

seq1  CTAATGCACTGGTGATGTTCGAAGCAGAAATCAGACAGAAGACACAAAGG  1000
      || ||||||| |||||| ||| ||||||| |||||||| ||||   ||||
seq2  CT-ATGCACT-GTGATG-TCG-AGCAGAATTCAGACAG-AGACCACAAGG  993

seq1  TTGAGTTGCCATTTTCACCAAAGAAAACTGCTATAAAACATGGATTTGGT  1050
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TTGAGTTGCCATTTTCACCAAAG-AAACTGCTATAAAACATGGATTTGGG  1042

seq1  TTCTAATCTCCAAACTTCTAAAATGTCTTGGAGTCTTTACACAT-AATAA  1099
      || |||||||  ||| |||  ||||||||||||||||||| ||| |||||
seq2  TTTTAATCTC--AAC-TCT--AATGTCTTGGAGTCTTTAC-CATAAATAA  1086

seq1  AAGCTGCATGAATCAACAGAATCTTCACTCTTCTAAACTGTTACAAAATG  1149
      | |||||||||||||||||||  | ||| ||||| ||||||   | ||||
seq2  AGGCTGCATGAATCAACAGAA-GTGCAC-CTTCT-AACTGT---ACAATG  1130

seq1  CTTCTCTGCATCCTT  1164
      | |||| ||||||||
seq2  CCTCTC-GCATCCTT  1144