BAC Information

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BAC

Clone NameB6Ng01-011M16
Chromosome11 (Build37)
Map Location 103,979,567 - 104,132,095
singlet/doubletdoublet
Overlap geneCrhr1, 4933407P14Rik, Mapt
Upstream geneHexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream gene1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011M16.bB6Ng01-011M16.g
ACCDH847076DH847077
length1,072955
definitionDH847076|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M16, 5' end.DH847077|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,131,027 - 104,132,095)(103,979,567 - 103,980,515)
sequence
gaattcaggctacttcccaccagggaacagagggcacagggcaaaggccc
tgccagaggacaccttctagggctggtgggccacaggatttgcagatcaa
ccgtccctgcatggagagggacaggccacatgctgggttaacacattaaa
gtagagcgttcatgaacaggaaagggcgggagatcatggacaaggagacc
agatggctaccagggaaggtgctggggcaaagggtgggtttcagaggact
ccccctgccctttaaggctgggagagcagagaaagcttagggacaccaga
aacagatctatcatcacaatctctttggaagaattccatagttggtgtcc
ctggtcctgtctccttccctggaggattgagctagaattgaacaatctgg
agacaccggcaggaatcgctgagtttcttgtcttccacttgacactgggc
aggcaggttatcagtgtcacgccttcctctggtttcccactgatagtaag
catcttgaaggtagagactcctgaatggactattttgagctactggacac
ctgtcaatacttgtgtctggggcaggcacctcttgaatggccgggagagt
ggaatagtggctacgtagagtgctctccacactcccctcccgggtctcac
ttccaggcctgcatgtgctacctcacaagctttcctgagatgggagagag
aggcagaggggtgggaaagagtgactggaaagagaatatattggagggac
ccagatgggagaggcatgaggcccaaagaatgttgaaagtctgcacccgc
ttcaggggatagctccctaaaggccacaggagccagagactgctgggcct
ttgagctggacattaacaaagagcattgctcctcaagtttgggtcctgag
acttgttggggaaccagcagttctgtacaaatccagatggcgttgccacc
ctctggggttcaaaggacagggtgggtgagcaccagagctgcctatcagg
acacttcctgaccacggcttcagcaaggtcttgggccagaacatatcagt
tgcataatgaagtcttggagag
gaattccaccaagaaagaagcactggctagtggccgtgagacagccctac
agcttagtgcgaagaagttcacagacccagctgggaagcagattcaaggt
ttaagagagatcactccagccgtgaggttgagggagtacagtgtacaagt
gttgctggggcaaccactcctgtctggtttgatggacttttccttggccc
tggatctcaacctctgctttgtgcattgaggacacgtcatctgtctccag
taggcatctgactgacagtaaacaaaccttccagagactgagtcatatat
caacatgccaatttgtttttccgaaatgggagtagatggggctaaactag
gctctgtctgcatgcagcctgcttctgaaacagaaacccgatgtgagtct
gagccacaccctctcttctaagaagccttgggcaagcttttctctgtgag
catgctgtggacagtcaccaggaaagactgcttggacagggctagaagcc
agtagaaagtcttcgttagttagccagtgactacactggtgttctggatc
acagtgtagccctgagctttttctcggagtgagcttttaagtgcaaaatc
catgttctgggttttcatgcttctactaacaagaacagttagccagaagc
agaactacagaagctaaaatgcaaggttggtatacttagagactttctca
gaactacggactttgatggattaggtctttgttttcattttggcaggtgg
tgctgtctactgtgggacagtggaccgtgccaccagacagaaaacctggt
aaggttgagtggactcatgaacgtcagtcaattctcataataggcattta
aatctactcctcaaacaggttcctgtcctggacacatgactcatgacact
ccatgggacaacatctgaagttcttccttcatgcagatgagcatctctaa
catct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104131027_104132095
seq2: B6Ng01-011M16.b_46_1117 (reverse)

seq1  CTCTTCAAGGCTTCATTATGCAACCTGATATGTTCTTGGCCCAAGACCTG  50
      |||| |||| ||||||||||||| ||||||||||| ||||||||||||| 
seq2  CTCTCCAAGACTTCATTATGCAA-CTGATATGTTC-TGGCCCAAGACCTT  48

seq1  CCTGGAGCCGTGGTCAGG-AGTGTCCTTGTAGGCAGCTCTGGTGCTCACC  99
       ||| ||||||||||||| ||||||||  |||||||||||||||||||||
seq2  GCTGAAGCCGTGGTCAGGAAGTGTCCTGATAGGCAGCTCTGGTGCTCACC  98

seq1  ACTCCTGTCCTTTGGAACCCAGA-GGTGGCAACGGCATCTGGA-TTGTAC  147
         ||||||||||| | |||||| |||||||||| |||||||| ||||||
seq2  CACCCTGTCCTTTGAACCCCAGAGGGTGGCAACGCCATCTGGATTTGTAC  148

seq1  AGGACTGCTGGTTCCCCAAC-AGTCTCAGGACCCAAACTTG-GGAGCAAT  195
      || ||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  AGAACTGCTGGTTCCCCAACAAGTCTCAGGACCCAAACTTGAGGAGCAAT  198

seq1  GCTCTTTGTTAATGTCCAGCTCAAAGGCCCAGCAGTCTCTGGCTCCTGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGTTAATGTCCAGCTCAAAGGCCCAGCAGTCTCTGGCTCCTGTG  248

seq1  GCCCTTAGGGAGCTATCCCCTGAAGCGGGTGCAGACTTTCAACATTCTTT  295
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGGGAGCTATCCCCTGAAGCGGGTGCAGACTTTCAACATTCTTT  298

seq1  GGGCCTCATGCCTCTCCCATCTGGGTCCCTCCAATATATTCTCTTTCCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCATGCCTCTCCCATCTGGGTCCCTCCAATATATTCTCTTTCCAG  348

seq1  TCACTCTTTCCCACCCCTCTGCCTCTCTCTCCCATCTCAGGAAAGCTTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTTCCCACCCCTCTGCCTCTCTCTCCCATCTCAGGAAAGCTTGT  398

seq1  GAGGTAGCACATGCAGGCCTGGAAGTGAGACCCGGGAGGGGAGTGTGGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGCACATGCAGGCCTGGAAGTGAGACCCGGGAGGGGAGTGTGGAG  448

seq1  AGCACTCTACGTAGCCACTATTCCACTCTCCCGGCCATTCAAGAGGTGCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTACGTAGCCACTATTCCACTCTCCCGGCCATTCAAGAGGTGCC  498

seq1  TGCCCCAGACACAAGTATTGACAGGTGTCCAGTAGCTCAAAATAGTCCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGACACAAGTATTGACAGGTGTCCAGTAGCTCAAAATAGTCCAT  548

seq1  TCAGGAGTCTCTACCTTCAAGATGCTTACTATCAGTGGGAAACCAGAGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTCTCTACCTTCAAGATGCTTACTATCAGTGGGAAACCAGAGGA  598

seq1  AGGCGTGACACTGATAACCTGCCTGCCCAGTGTCAAGTGGAAGACAAGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGACACTGATAACCTGCCTGCCCAGTGTCAAGTGGAAGACAAGAA  648

seq1  ACTCAGCGATTCCTGCCGGTGTCTCCAGATTGTTCAATTCTAGCTCAATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCGATTCCTGCCGGTGTCTCCAGATTGTTCAATTCTAGCTCAATC  698

seq1  CTCCAGGGAAGGAGACAGGACCAGGGACACCAACTATGGAATTCTTCCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGAAGGAGACAGGACCAGGGACACCAACTATGGAATTCTTCCAA  748

seq1  AGAGATTGTGATGATAGATCTGTTTCTGGTGTCCCTAAGCTTTCTCTGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGTGATGATAGATCTGTTTCTGGTGTCCCTAAGCTTTCTCTGCT  798

seq1  CTCCCAGCCTTAAAGGGCAGGGGGAGTCCTCTGAAACCCACCCTTTGCCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCCTTAAAGGGCAGGGGGAGTCCTCTGAAACCCACCCTTTGCCC  848

seq1  CAGCACCTTCCCTGGTAGCCATCTGGTCTCCTTGTCCATGATCTCCCGCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTTCCCTGGTAGCCATCTGGTCTCCTTGTCCATGATCTCCCGCC  898

seq1  CTTTCCTGTTCATGAACGCTCTACTTTAATGTGTTAACCCAGCATGTGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGTTCATGAACGCTCTACTTTAATGTGTTAACCCAGCATGTGGC  948

seq1  CTGTCCCTCTCCATGCAGGGACGGTTGATCTGCAAATCCTGTGGCCCACC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTCTCCATGCAGGGACGGTTGATCTGCAAATCCTGTGGCCCACC  998

seq1  AGCCCTAGAAGGTGTCCTCTGGCAGGGCCTTTGCCCTGTGCCCTCTGTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAGAAGGTGTCCTCTGGCAGGGCCTTTGCCCTGTGCCCTCTGTTC  1048

seq1  CCTGGTGGGAAGTAGCCTGAATTC  1069
      ||||||||||||||||||||||||
seq2  CCTGGTGGGAAGTAGCCTGAATTC  1072

seq1: chr11_103979567_103980515
seq2: B6Ng01-011M16.g_67_1016

seq1  GAATTCCACCAAGAAAGAAGCACTGGCTAGTGGCCGTGAGACAGCCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCAAGAAAGAAGCACTGGCTAGTGGCCGTGAGACAGCCCTAC  50

seq1  AGCTTAGTGCGAAGAAGTTCACAGACCCAGCTGGGAAGCAGATTCAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGTGCGAAGAAGTTCACAGACCCAGCTGGGAAGCAGATTCAAGGT  100

seq1  TTAAGAGAGATCACTCCAGCCGTGAGGTTGAGGGAGTACAGTGTACAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAGATCACTCCAGCCGTGAGGTTGAGGGAGTACAGTGTACAAGT  150

seq1  GTTGCTGGGGCAACCACTCCTGTCTGGTTTGATGGACTTTTCCTTGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGGCAACCACTCCTGTCTGGTTTGATGGACTTTTCCTTGGCCC  200

seq1  TGGATCTCAACCTCTGCTTTGTGCATTGAGGACACGTCATCTGTCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCAACCTCTGCTTTGTGCATTGAGGACACGTCATCTGTCTCCAG  250

seq1  TAGGCATCTGACTGACAGTAAACAAACCTTCCAGAGACTGAGTCATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCTGACTGACAGTAAACAAACCTTCCAGAGACTGAGTCATATAT  300

seq1  CAACATGCCAATTTGTTTTTCCGAAATGGGAGTAGATGGGGCTAAACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCCAATTTGTTTTTCCGAAATGGGAGTAGATGGGGCTAAACTAG  350

seq1  GCTCTGTCTGCATGCAGCCTGCTTCTGAAACAGAAACCCGATGTGAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTGCATGCAGCCTGCTTCTGAAACAGAAACCCGATGTGAGTCT  400

seq1  GAGCCACACCCTCTCTTCTAAGAAGCCTTGGGCAAGCTTTTCTCTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACACCCTCTCTTCTAAGAAGCCTTGGGCAAGCTTTTCTCTGTGAG  450

seq1  CATGCTGTGGACAGTCACCAGGAAAGACTGCTTGGACAGGGCTAGAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTGGACAGTCACCAGGAAAGACTGCTTGGACAGGGCTAGAAGCC  500

seq1  AGTAGAAAGTCTTCGTTAGTTAGCCAGTGACTACACTGGTGTTCTGGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGTCTTCGTTAGTTAGCCAGTGACTACACTGGTGTTCTGGATC  550

seq1  ACAGTGTAGCCCTGAGCTTTTTCTCGGAGTGAGCTTTTAAGTGCAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAGCCCTGAGCTTTTTCTCGGAGTGAGCTTTTAAGTGCAAAATC  600

seq1  CATGTTCTGGGTTTTCATGCTTCTACTAACAAGAACAGTTAGCCAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTGGGTTTTCATGCTTCTACTAACAAGAACAGTTAGCCAGAAGC  650

seq1  AGAACTACAGAAGCTAAAATGCAAGGTTGGTATACTTAGAGACTTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACAGAAGCTAAAATGCAAGGTTGGTATACTTAGAGACTTTCTCA  700

seq1  GAACTACGGACTTTGATGGATTAGGTCTTTGTTTTCATTTTGGCAGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACGGACTTTGATGGATTAGGTCTTTGTTTTCATTTTGGCAGGTGG  750

seq1  TGCTGTCTACTGTGGGACAGTGGACCGTGCCACCAGACAGAAAACCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTACTGTGGGACAGTGGACCGTGCCACCAGACAGAAAACCTGGT  800

seq1  AAGGTTGAGTGGACTCAGGAACGCCAG-CAATTCTCATAATAGGCATTTA  849
      ||||||||||||||||| ||||| ||| ||||||||||||||||||||||
seq2  AAGGTTGAGTGGACTCATGAACGTCAGTCAATTCTCATAATAGGCATTTA  850

seq1  AATCTACTCC-CAAACAGGTTCCTGTCCTGGGACACATGAC-CATGACAC  897
      |||||||||| |||||||||||||||||| ||||||||||| ||||||||
seq2  AATCTACTCCTCAAACAGGTTCCTGTCCT-GGACACATGACTCATGACAC  899

seq1  TCCATGGGGACAACACCTGAAGTTCTTCC-TCATGCAGATGAGGCATCCC  946
      ||||| ||||||||| ||||||||||||| |||||||||||| ||||| |
seq2  TCCAT-GGGACAACATCTGAAGTTCTTCCTTCATGCAGATGA-GCATCTC  947

seq1  TAA  949
      |||
seq2  TAA  950