BAC Information

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BAC

Clone NameB6Ng01-011P24
Chromosome11 (Build37)
Map Location 26,963,406 - 27,012,719
singlet/doubletdoublet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011P24.bB6Ng01-011P24.g
ACCDH847216DH847217
length1,1761,102
definitionDH847216|Mus musculus domesticus DNA, BAC clone: B6Ng01-011P24, 5' end.DH847217|Mus musculus domesticus DNA, BAC clone: B6Ng01-011P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,011,521 - 27,012,719)(26,963,406 - 26,964,018)
sequence
gaattcagagtaaaagagaatgaaaactgtccatgcttatgattggaagg
accttgctaccttccaactgagcatcagtctccaccacagagtgtgagag
gaaaggtgtcttaaatcaggcagtaaaggcagctcaaactggacacagct
gagtaaaacattaggctgaaaaggaaggcagtattgttcttcagaaagtc
tcctgctactgtgacctaaggacatcattagctcttttgacaactgcaag
tttatatagaaacttataactttaattatttcaaaacctacttttaatga
tggttcttaaaatgctttaaccttccttgtaacccattacccaccaaagg
gagtgggggaaaaaaaggataaagggcaaatggaccttttagaaagattt
ttggagcaactctcatctgtgttgtctggaaatcaacagttcacagctta
gcagtggcagcttgatcaactcacaaacacttaatggatagagttgggat
agcaaacacgaatcagttgttgtgacactacctagcattgacatccaggc
ctcagccgcgacacaagtcagcaggaggaacacaaaaagaaacacttggc
taagcctctctcaggaaatgtcttgcctccgcaatatcttgcctcaacac
atgcatctgtctcagcaggcatcactcttcaatcagaccaagtctacaga
aactgaaagaaacttcatcataccactagaagtttttggtgcatttctct
atggagtcctgacaaatccatctcaattacacaaggcagaacaatgcacg
catgtcattagcaaagaatccttcatcacgtgttctttcacatgcttgct
ttagcatatcatcctctctcctgtgtctgtttcagtgcaatgttccttta
ggagtatgttttatctttcacacttgtgtccactctaacaaacattcttt
cacatgtttaccccaacaaacaccatccactgactttccaaagaccctta
gttttccacttcagaaatattcacagtcttcatttatgacaggagctgac
tctggacttattgatagttaataaacagacctatcaaagcagaatgacat
tattaaataactgtttagttcatcacatagaacctttaagacctctacgg
gaatgcagttattgtgtaatctgcct
gaattctgtcccatgatgcttgaatacagtacacatatgtccatttttgt
cattctcattaagcattgtacagaatatcataaccactgaagtaagatta
aagggaaatcaaaattataagaaatcaaagacataaaattattaataatt
tcaggtacatgattgaacagatacaaaataaaaaggataaacccaaatac
aaaaactgttgtagttttaagcaattttactagaatctaggaacatgtaa
aaatgtacacaacagcaaaacatctgacttttaatgccatcaataacagc
actgatattattaaaagcttatgatcagggctggtgagatggctcagtgg
gtaagagcacctgactgctcttccgaaggtccggagttcaaatcccagca
accacatggtggctcacaaccatccgtaatgagatctggcgccctcttct
ggagtgtctgaagacagctacagtgtacttacatataataaataaatctt
taaaaaaaaaaaaagcttatgatcaaatctaatacaggatgtaagatatt
tacattaaaaactcaaaatattgctgagagaaattaaatatttaataagt
agaaagatattagaaagttagaccatattatagaatatggagactcaatt
ttgcagtcccttacttttgctatacattcagtgccaacacaatcaaagtc
acactagggttttcatggaaattgacaactatattctatacactgtgtag
aaatgtaaaaactctaataataatgaaggcaataatgaagaaggaagatg
atgctagaaaactcacaatagaaaatattcaatcatcattaagccacact
aattagtaccatgtggtattagaagccagtagaatagaataaagatacta
catgcagatccagatgcaaacatatcttttttaccaccctgctgcaactg
taattcatcaggaaatgatgactttgaaataagcaatgttaggttatatt
ctaccattagatttatggctaaatcaataaaagctagtatcagcagatgt
gatggtgttatagcattataaaacagcataactacttgtatttcaaacat
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27011521_27012719
seq2: B6Ng01-011P24.b_48_1223 (reverse)

seq1  AGGCAGATTAACAACAAATAAAACTGCACTCCCCTTAGAGTTCCTTAAGT  50
      |||||||||    ||| | | ||||||| | ||| ||||| || | ||| 
seq2  AGGCAGATT----ACACA-ATAACTGCA-TTCCCGTAGAGGTCTTAAAGG  44

seq1  GTCTATGTTGATGAACTAAACAGTTATTTTATTATTGTCAATCCTGCTTT  100
       |||||| |||||||||||||||||| |||| || |||| || |||||||
seq2  TTCTATG-TGATGAACTAAACAGTTA-TTTAATAATGTC-ATTCTGCTTT  91

seq1  GATAGGTTCTGTTTTATTAAACTATCAAATAGTCCAGAGTCAGGCTTCCT  150
      |||||| |||| |||||| |||||||||  |||||||||||||   ||||
seq2  GATAGG-TCTG-TTTATT-AACTATCAATAAGTCCAGAGTCAG--CTCCT  136

seq1  GTCATAAAATTGGAGAACTGTGAATATTTTCTGAAGTGGAAACTTAAGGG  200
      ||||||||  || || |||||||||| |||||||||||||||  ||||||
seq2  GTCATAAA--TGAAG-ACTGTGAATA-TTTCTGAAGTGGAAAACTAAGGG  182

seq1  TTCTTTGGAAAGTCAGTTGGATGGTGTTTTGTTGGGGTAAACATGTGAAA  250
       ||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  -TCTTTGGAAAGTCAG-TGGATGGTG-TTTGTTGGGGTAAACATGTGAAA  229

seq1  GAATGTTTTGTTAGAGTGGACACAAGTGTGAAAGATTAAAACATACTCCT  300
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAATG-TTTGTTAGAGTGGACACAAGTGTGAAAGA-TAAAACATACTCCT  277

seq1  AAAGGAACATTGCACTGAAACAGACACAGGAGAGAGGATGATATGCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACATTGCACTGAAACAGACACAGGAGAGAGGATGATATGCTAAA  327

seq1  GCAAGCATGTGAAAGAACACGTGATGAAGGATTCTTTGCTAATGACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATGTGAAAGAACACGTGATGAAGGATTCTTTGCTAATGACATGC  377

seq1  GTGCATTGTTCTGCCTTGTGTAATTGAGATGGATTTGTCAGGACTCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTGTTCTGCCTTGTGTAATTGAGATGGATTTGTCAGGACTCCATA  427

seq1  GAGAAATGCACCAAAAACTTCTAGTGGTATGATGAAGTTTCTTTCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGCACCAAAAACTTCTAGTGGTATGATGAAGTTTCTTTCAGTTT  477

seq1  CTGTAGACTTGGTCTGATTGAAGAGTGATGCCTGCTGAGACAGATGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACTTGGTCTGATTGAAGAGTGATGCCTGCTGAGACAGATGCATG  527

seq1  TGTTGAGGCAAGATATTGCGGAGGCAAGACATTTCCTGAGAGAGGCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGCAAGATATTGCGGAGGCAAGACATTTCCTGAGAGAGGCTTAG  577

seq1  CCAAGTGTTTCTTTTTGTGTTCCTCCTGCTGACTTGTGTCGCGGCTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGTTTCTTTTTGTGTTCCTCCTGCTGACTTGTGTCGCGGCTGAGG  627

seq1  CCTGGATGTCAATGCTAGGTAGTGTCACAACAACTGATTCGTGTTTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGTCAATGCTAGGTAGTGTCACAACAACTGATTCGTGTTTGCTA  677

seq1  TCCCAACTCTATCCATTAAGTGTTTGTGAGTTGATCAAGCTGCCACTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTCTATCCATTAAGTGTTTGTGAGTTGATCAAGCTGCCACTGCT  727

seq1  AAGCTGTGAACTGTTGATTTCCAGACAACACAGATGAGAGTTGCTCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGAACTGTTGATTTCCAGACAACACAGATGAGAGTTGCTCCAAA  777

seq1  AATCTTTCTAAAAGGTCCATTTGCCCTTTATCCTTTTTTTCCCCCACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTAAAAGGTCCATTTGCCCTTTATCCTTTTTTTCCCCCACTCC  827

seq1  CTTTGGTGGGTAATGGGTTACAAGGAAGGTTAAAGCATTTTAAGAACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGGGTAATGGGTTACAAGGAAGGTTAAAGCATTTTAAGAACCAT  877

seq1  CATTAAAAGTAGGTTTTGAAATAATTAAAGTTATAAGTTTCTATATAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGTAGGTTTTGAAATAATTAAAGTTATAAGTTTCTATATAAAC  927

seq1  TTGCAGTTGTCAAAAGAGCTAATGATGTCCTTAGGTCACAGTAGCAGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTGTCAAAAGAGCTAATGATGTCCTTAGGTCACAGTAGCAGGAG  977

seq1  ACTTTCTGAAGAACAATACTGCCTTCCTTTTCAGCCTAATGTTTTACTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGAAGAACAATACTGCCTTCCTTTTCAGCCTAATGTTTTACTCA  1027

seq1  GCTGTGTCCAGTTTGAGCTGCCTTTACTGCCTGATTTAAGACACCTTTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCCAGTTTGAGCTGCCTTTACTGCCTGATTTAAGACACCTTTCC  1077

seq1  TCTCACACTCTGTGGTGGAGACTGATGCTCAGTTGGAAGGTAGCAAGGTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACTCTGTGGTGGAGACTGATGCTCAGTTGGAAGGTAGCAAGGTC  1127

seq1  CTTCCAATCATAAGCATGGACAGTTTTCATTCTCTTTTACTCTGAATTC  1199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATCATAAGCATGGACAGTTTTCATTCTCTTTTACTCTGAATTC  1176

seq1: chr11_26963406_26964018
seq2: B6Ng01-011P24.g_567_1167

seq1  AAAAAAAAAAAAAGCTTATGATCAAATCTAATACAGGATGTAAGATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGCTTATGATCAAATCTAATACAGGATGTAAGATATTT  50

seq1  ACATTAAAAACTCAAAATATTGCTGAGAGAAATTAAATATTTAATAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAAACTCAAAATATTGCTGAGAGAAATTAAATATTTAATAAGTA  100

seq1  GAAAGATATTAGAAAGTTAGACCATATTATAGAATATGGAGACTCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATATTAGAAAGTTAGACCATATTATAGAATATGGAGACTCAATTT  150

seq1  TGCAGTCCCTTACTTTTGCTATACATTCAGTGCCAACACAATCAAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCCTTACTTTTGCTATACATTCAGTGCCAACACAATCAAAGTCA  200

seq1  CACTAGGGTTTTCATGGAAATTGACAACTATATTCTATACACTGTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGGTTTTCATGGAAATTGACAACTATATTCTATACACTGTGTAGA  250

seq1  AATGTAAAAACTCTAATAATAATGAAGGCAATAATGAAGAAGGAAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAACTCTAATAATAATGAAGGCAATAATGAAGAAGGAAGATGA  300

seq1  TGCTAGAAAACTCACAATAGAAAATATTCAATCATCATTAAGCCACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAAACTCACAATAGAAAATATTCAATCATCATTAAGCCACACTA  350

seq1  ATTAGTACCATGTGGTATTAGAAGCCAGTAGAATAGAATAAAGATACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTACCATGTGGTATTAGAAGCCAGTAGAATAGAATAAAGATACTAC  400

seq1  ATGCAGATCCAGATGCAAACATATCTTTTTTACCACCCTGCTGCAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATCCAGATGCAAACATATCTTTTTTACCACCCTGCTGCAACTGT  450

seq1  AATTCAATCAGGAAATGATGACTTTGAAATAAGCAATGTTAGGTTATAAT  500
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTC-ATCAGGAAATGATGACTTTGAAATAAGCAATGTTAGGTTAT-AT  498

seq1  TCTACCATTAGATTTATGGCTAAATCAATAAAAGCTAGTTATCAGGCAGA  550
      |||||||||||||||||||||||||||||||||||||| ||||| |||| 
seq2  TCTACCATTAGATTTATGGCTAAATCAATAAAAGCTAG-TATCA-GCAG-  545

seq1  ATGTGATTGTGTTAATAGCAATTATAAAAACAAGCATAACTTACTTGTAA  600
      ||||||| ||||| ||||| |||||||||   |||||||| ||||||| |
seq2  ATGTGATGGTGTT-ATAGC-ATTATAAAA--CAGCATAAC-TACTTGT-A  589

seq1  TTTCAAAACATAC  613
      |||| ||||||||
seq2  TTTC-AAACATAC  601