BAC Information

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BAC

Clone NameB6Ng01-012B02
Chromosome11 (Build37)
Map Location 53,059,493 - 53,228,752
singlet/doubletdoublet
Overlap geneHspa4, Zcchc10, Aff4, LOC100040576
Upstream geneSkp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205
Downstream geneLeap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012B02.bB6Ng01-012B02.g
ACCDH847260DH847261
length9171,148
definitionDH847260|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B02, 5' end.DH847261|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,059,493 - 53,060,081)(53,227,604 - 53,228,752)
sequence
gaattctcatcgcctgcaagagcaatactattttattttattttatttta
ttttatcacctcaatctattccaatctaataccatgtaaccaaaaaatag
aaataaagacaaaacaaaaagaaacaacaaaaacaggacaatgtggggca
gtgagctgtgcacaggcaacctggtcccagtcgagcctggaacacctgag
acctggtgagcgatgacttccaccttcatgggactgtaggagttcagcca
cgcctcctaggcccctggctcctatcacagctacagcctcccacagtccc
ccacccctaccccaccccagctgagaggtatgtagcaaagaagcagcatc
aagcccttccacgtgcaaataaggtttccccaaagctctcagaccaagtc
aatgagaagtacctgctgtcagaccctaacccaccccaaaactgaatata
agaatcctatcctgaaggattaaaggtgtgtgagaactactccgttgtcc
gagagcttgtgtcataagagctgtaacacttgggaagagatctgctctcc
caaagcgccgcctgaagctcctccacactcctcgctagctaggcagcctt
tcatcggcccagccagacccaactcagtgcagggcaactcgggtaaccaa
gatggtggcactgggaagacagaggtggaaccagctgtggtggcagaagt
gacttccccctctaccccccccccctcccagaactctagcacctggctgg
gccaccgcctctagtacacaggcccacatgacaaagaaagagaggtccag
agagctggctcagcaactgagagttctccagagaattgtagttagacccc
agcacccacatgaggtggaccacactgcctgttactccagctccaaggga
cttgatacttcttctga
gaattccaggtgaataccactgatgaaaatggtcaactgctactacacat
taaaaatagagtcacaatggcacatgtgcagcaccccactggattactca
aaagcactctctctctacatgttatttctgtgtaagaactagtaaggcta
gagagaaggctaaggggttaagagcactggctgctcttccaggggacctg
ggttcaattcccagcacccacatggcagctcacagttgaatggaactaac
tccagtaccaggggatataacaccctcagacaagacatgcaggcaaaaac
accaatgcacataaaacagaataaataaatcattaaaaaagtagaaaaca
gaaaatagtgttcgtgtgttcccacactagccccagtgtaactccatgaa
agtctgtaacaaaccattctgctactatctaattactatcagattccctg
aaccaccaacaaatcccttctgttcagccagatgtttaaaatctgaaagg
acagaaacaaaaagactcttcctcagtgagcaacggaggctctacatcag
aatggcataaatgggaagagtgaacgatgtcctaggatttgactccaatg
tagttttgggagcagacagggatgcagtacttggatatttctctgaaaag
aaagcttttagccatgcagagaaaaaggactgttaaagactacctaataa
tcaagtaaggcaagaaatgatgagacacttaaggttaaacgtctgtacag
attccaactaataaatgtgaaaggaatgccagacacaatattggtgctga
tttttctttgctcactccatttccattatttgctcactctcctgaatagg
aattcacatagctcaggctgccctgaactcccaatgataacctcaaactc
ttcatccttacagcttctgctcccaattcctggaattacaggcggatgaa
gtgcaagttctggttgtgtcatgtgatgcagattccacaggatgttggag
aagaacataagtagattcacagacatgatggggggagcctgcatactaga
tagctggtgtacctcttttgttggtctcctcatcttgctgatctcacttt
aactaggagagacattggcagagaacttctgtatccaagtgggtccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53059493_53060081
seq2: B6Ng01-012B02.b_45_633

seq1  GAATTCTCATCGCCTGCAAGAGCAATACTATTTTATTTTATTTTATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCGCCTGCAAGAGCAATACTATTTTATTTTATTTTATTTTA  50

seq1  TTTTATCACCTCAATCTATTCCAATCTAATACCATGTAACCAAAAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCACCTCAATCTATTCCAATCTAATACCATGTAACCAAAAAATAG  100

seq1  AAATAAAGACAAAACAAAAAGAAACAACAAAAACAGGACAATGTGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGACAAAACAAAAAGAAACAACAAAAACAGGACAATGTGGGGCA  150

seq1  GTGAGCTGTGCACAGGCAACCTGGTCCCAGTCGAGCCTGGAACACCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGTGCACAGGCAACCTGGTCCCAGTCGAGCCTGGAACACCTGAG  200

seq1  ACCTGGTGAGCGATGACTTCCACCTTCATGGGACTGTAGGAGTTCAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGAGCGATGACTTCCACCTTCATGGGACTGTAGGAGTTCAGCCA  250

seq1  CGCCTCCTAGGCCCCTGGCTCCTATCACAGCTACAGCCTCCCACAGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCTAGGCCCCTGGCTCCTATCACAGCTACAGCCTCCCACAGTCCC  300

seq1  CCACCCCTACCCCACCCCAGCTGAGAGGTATGTAGCAAAGAAGCAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTACCCCACCCCAGCTGAGAGGTATGTAGCAAAGAAGCAGCATC  350

seq1  AAGCCCTTCCACGTGCAAATAAGGTTTCCCCAAAGCTCTCAGACCAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTCCACGTGCAAATAAGGTTTCCCCAAAGCTCTCAGACCAAGTC  400

seq1  AATGAGAAGTACCTGCTGTCAGACCCTAACCCACCCCAAAACTGAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAGTACCTGCTGTCAGACCCTAACCCACCCCAAAACTGAATATA  450

seq1  AGAATCCTATCCTGAAGGATTAAAGGTGTGTGAGAACTACTCCGTTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTATCCTGAAGGATTAAAGGTGTGTGAGAACTACTCCGTTGTCC  500

seq1  GAGAGCTTGTGTCATAAGAGCTGTAACACTTGGGAAGAGATCTGCTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTGTGTCATAAGAGCTGTAACACTTGGGAAGAGATCTGCTCTCC  550

seq1  CAAAGCGCCGCCTGAAGCTCCTCCACACTCCTCGCTAGC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGCCGCCTGAAGCTCCTCCACACTCCTCGCTAGC  589

seq1: chr11_53227604_53228752
seq2: B6Ng01-012B02.g_65_1212 (reverse)

seq1  CCGGACCCACTGGAATACCAGGAGTTCTCTGCC-ATGTCTCT-CTAGTTA  48
      ||||||||||| | ||| ||| ||||||||||| |||||||| |||||||
seq2  CCGGACCCACTTGGATA-CAGAAGTTCTCTGCCAATGTCTCTCCTAGTTA  49

seq1  GAGTGAAGATCAGCAAAGATGA-GAGACCAAC-AAAGAGTTACA-CAGCT  95
       |||| |||||||| ||||||| ||||||||| |||||| |||| |||||
seq2  AAGTG-AGATCAGC-AAGATGAGGAGACCAACAAAAGAGGTACACCAGCT  97

seq1  ATCTATGTATGCAAGCT-CCCCCATCATTGTCTGTTGAATCTTACTTATG  144
      ||||| ||||||| ||| ||||||||| |||||| |||||| ||||||||
seq2  ATCTA-GTATGCAGGCTCCCCCCATCA-TGTCTG-TGAATC-TACTTATG  143

seq1  TTC-TCTCCAAACATCCTGT-GAATCTGCATCACATGACACAACCAGAAA  192
      ||| ||||| |||||||||| |||||||||||||||||||||||||| ||
seq2  TTCTTCTCC-AACATCCTGTGGAATCTGCATCACATGACACAACCAG-AA  191

seq1  CTTGCACTTCATCCGCCTGTAATTCCAGGAATTGGGAGCAGAAGCTGTAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTTCATCCGCCTGTAATTCCAGGAATTGGGAGCAGAAGCTGTAA  241

seq1  GGATGAAGAGTTTGAGGTTATCATTGGGAGTTCAGGGCAGCCTGAGCTAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGAGTTTGAGGTTATCATTGGGAGTTCAGGGCAGCCTGAGCTAT  291

seq1  GTGAATTCCTATTCAGGAGAGTGAGCAAATAATGGAAATGGAGTGAGCAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCCTATTCAGGAGAGTGAGCAAATAATGGAAATGGAGTGAGCAA  341

seq1  AGAAAAATCAGCACCAATATTGTGTCTGGCATTCCTTTCACATTTATTAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCAGCACCAATATTGTGTCTGGCATTCCTTTCACATTTATTAG  391

seq1  TTGGAATCTGTACAGACGTTTAACCTTAAGTGTCTCATCATTTCTTGCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATCTGTACAGACGTTTAACCTTAAGTGTCTCATCATTTCTTGCCT  441

seq1  TACTTGATTATTAGGTAGTCTTTAACAGTCCTTTTTCTCTGCATGGCTAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATTATTAGGTAGTCTTTAACAGTCCTTTTTCTCTGCATGGCTAA  491

seq1  AAGCTTTCTTTTCAGAGAAATATCCAAGTACTGCATCCCTGTCTGCTCCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCTTTTCAGAGAAATATCCAAGTACTGCATCCCTGTCTGCTCCC  541

seq1  AAAACTACATTGGAGTCAAATCCTAGGACATCGTTCACTCTTCCCATTTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACATTGGAGTCAAATCCTAGGACATCGTTCACTCTTCCCATTTA  591

seq1  TGCCATTCTGATGTAGAGCCTCCGTTGCTCACTGAGGAAGAGTCTTTTTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCTGATGTAGAGCCTCCGTTGCTCACTGAGGAAGAGTCTTTTTG  641

seq1  TTTCTGTCCTTTCAGATTTTAAACATCTGGCTGAACAGAAGGGATTTGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCCTTTCAGATTTTAAACATCTGGCTGAACAGAAGGGATTTGTT  691

seq1  GGTGGTTCAGGGAATCTGATAGTAATTAGATAGTAGCAGAATGGTTTGTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTCAGGGAATCTGATAGTAATTAGATAGTAGCAGAATGGTTTGTT  741

seq1  ACAGACTTTCATGGAGTTACACTGGGGCTAGTGTGGGAACACACGAACAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTTCATGGAGTTACACTGGGGCTAGTGTGGGAACACACGAACAC  791

seq1  TATTTTCTGTTTTCTACTTTTTTAATGATTTATTTATTCTGTTTTATGTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGTTTTCTACTTTTTTAATGATTTATTTATTCTGTTTTATGTG  841

seq1  CATTGGTGTTTTTGCCTGCATGTCTTGTCTGAGGGTGTTATATCCCCTGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGTTTTTGCCTGCATGTCTTGTCTGAGGGTGTTATATCCCCTGG  891

seq1  TACTGGAGTTAGTTCCATTCAACTGTGAGCTGCCATGTGGGTGCTGGGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGTTAGTTCCATTCAACTGTGAGCTGCCATGTGGGTGCTGGGAA  941

seq1  TTGAACCCAGGTCCCCTGGAAGAGCAGCCAGTGCTCTTAACCCCTTAGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCAGGTCCCCTGGAAGAGCAGCCAGTGCTCTTAACCCCTTAGCC  991

seq1  TTCTCTCTAGCCTTACTAGTTCTTACACAGAAATAACATGTAGAGAGAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTAGCCTTACTAGTTCTTACACAGAAATAACATGTAGAGAGAGA  1041

seq1  GTGCTTTTGAGTAATCCAGTGGGGTGCTGCACATGTGCCATTGTGACTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTGAGTAATCCAGTGGGGTGCTGCACATGTGCCATTGTGACTCT  1091

seq1  ATTTTTAATGTGTAGTAGCAGTTGACCATTTTCATCAGTGGTATTCACCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATGTGTAGTAGCAGTTGACCATTTTCATCAGTGGTATTCACCT  1141

seq1  GGAATTC  1149
      |||||||
seq2  GGAATTC  1148