BAC Information

Click to search

BAC

Clone NameB6Ng01-012D07
Chromosome11 (Build37)
Map Location 118,407,997 - 118,566,852
singlet/doubletdoublet
Overlap geneD11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D07.bB6Ng01-012D07.g
ACCDH847360DH847361
length1,154819
definitionDH847360|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D07, 5' end.DH847361|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,407,997 - 118,409,145)(118,566,034 - 118,566,852)
sequence
gaattcagaatctgacccagacagtgagacttggcagcacatagggtctt
ggcacatagggagggctggagtgaggctgtgcagggccagggctcctaag
cacctttgagctgagccctctgagcctgtgctggcctacctcccagccca
aggaggtaactctgtatgagaccgtcacccagagaatggtgaagtgtggc
cctgcctaggcccatattatgctcgcttctgtctctgaaagtcagaggca
gctgggtgtgactggcttggcatcgtacacacagtatgatgacatgaagc
agccagacaacttttatatttattgttgtctatgaaaactggcgaggcag
gaggtgggaagagctgcctctgctgagctgggccccacaagagtgtgtgc
tgaggcccaaaacccagcacgtcaggtctttcataggtcaccaggtcaaa
ctgaggccactctggtgacccggtacttatcctgtctgtctgtcctatga
gaagacgaaagaaagaggctggggtgggtggggtagctcagtgggtaata
gtgtttgctctgcaagcgtaaggacctgagtttgaattcttagcattcgt
gtaaaaaacctgagcacacttgtgcatgcctgtgaccccagcaatttggt
gcgggagtgggggtggggcatcctgagagcttgcttctggttagcatggc
tgaaaaggtgagcaactggttctgtgagagaccctgtgtcaaagggatat
aaggcagagagagagagggaggacacctgaaggcttcctctggcttccac
atccattgatgcactgtgtatacctgcacacacgtatgtggaccagaggt
cccatatagaatagaaaagtagggggtactgatgctcacagacaaccttc
cagggaacagggaggagatgtgtcagatgctgcatgcatcaaacttggtc
ctcccactcccagaacaagaacttaaactctagtacggtggctgtctcag
gtagcttcagattctggtttcttgatctaggccgacctgccatcctgtac
ctccatttccaccactgcgaaatggagaatgtgcctgtgtgccttccaga
ctgcacgagagacaggtgaagcaaccagcccaggaagggtggaacggttt
gccc
gaattcactgtaatttgggttcatttcgctgctgccctggagattgctcg
cacttgtgcataccaggcagaccttctgctgatggagccgtgccccagcc
ctctctttgctttctattggtactggctctcagctcactttcttgtttta
ttctgttggtgaccctggtccgtgggatgctgttgctcacatttggggtg
ggtcttctcgcctcagccaaacctctctggaaacaccctcatagacacac
gggctggtgtgtttccctggtgattccaaaccccattaagttggccaaga
aggttgagcctcacggctcctttcccatggtaccttgtgcccattattgg
aatatttcttcttcttcttttttttttttttttaaagtgaaatggatcat
gggtaatgttccagttgacagagacatggaatcccggagtcagaatgatc
ccatttagaaacacgaggggtgacgtgggaagggaaaggaagagccctca
ttaaaggggtggtctattagcaagagcacccattaataaccctgctgtag
gggagggggaggaccattaggtgatgatgagccaggcccagttctctctg
aaatgagataattacatcctttaattttacttccagaggatcaaggatac
cttgcagaaacacggggcacgtctgcagaactaaaaataattatactaat
gattagtaatgacacgtagacattaaccccaccacggggaggaggggtac
tgcacatctgggaatagtggggaatagcaggggtcttggggctacccatt
tgattgagcagacacagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118407997_118409145
seq2: B6Ng01-012D07.b_47_1200

seq1  GAATTCAGAATCTGACCCAGACAGTGAGACTTGGCAGCACATAGGGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATCTGACCCAGACAGTGAGACTTGGCAGCACATAGGGTCTT  50

seq1  GGCACATAGGGAGGGCTGGAGTGAGGCTGTGCAGGGCCAGGGCTCCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATAGGGAGGGCTGGAGTGAGGCTGTGCAGGGCCAGGGCTCCTAAG  100

seq1  CACCTTTGAGCTGAGCCCTCTGAGCCTGTGCTGGCCTACCTCCCAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGAGCTGAGCCCTCTGAGCCTGTGCTGGCCTACCTCCCAGCCCA  150

seq1  AGGAGGTAACTCTGTATGAGACCGTCACCCAGAGAATGGTGAAGTGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAACTCTGTATGAGACCGTCACCCAGAGAATGGTGAAGTGTGGC  200

seq1  CCTGCCTAGGCCCATATTATGCTCGCTTCTGTCTCTGAAAGTCAGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTAGGCCCATATTATGCTCGCTTCTGTCTCTGAAAGTCAGAGGCA  250

seq1  GCTGGGTGTGACTGGCTTGGCATCGTACACACAGTATGATGACATGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGTGACTGGCTTGGCATCGTACACACAGTATGATGACATGAAGC  300

seq1  AGCCAGACAACTTTTATATTTATTGTTGTCTATGAAAACTGGCGAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACAACTTTTATATTTATTGTTGTCTATGAAAACTGGCGAGGCAG  350

seq1  GAGGTGGGAAGAGCTGCCTCTGCTGAGCTGGGCCCCACAAGAGTGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGAAGAGCTGCCTCTGCTGAGCTGGGCCCCACAAGAGTGTGTGC  400

seq1  TGAGGCCCAAAACCCAGCACGTCAGGTCTTTCATAGGTCACCAGGTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCCAAAACCCAGCACGTCAGGTCTTTCATAGGTCACCAGGTCAAA  450

seq1  CTGAGGCCACTCTGGTGACCCGGTACTTATCCTGTCTGTCTGTCCTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCACTCTGGTGACCCGGTACTTATCCTGTCTGTCTGTCCTATGA  500

seq1  GAAGACGAAAGAAAGAGGCTGGGGTGGGTGGGGTAGCTCAGTGGGTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGAAAGAAAGAGGCTGGGGTGGGTGGGGTAGCTCAGTGGGTAATA  550

seq1  GTGTTTGCTCTGCAAGCGTAAGGACCTGAGTTTGAATTCTTAGCATTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTCTGCAAGCGTAAGGACCTGAGTTTGAATTCTTAGCATTCGT  600

seq1  GTAAAAAACCTGAGCACACTTGTGCATGCCTGTGACCCCAGCAATTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAACCTGAGCACACTTGTGCATGCCTGTGACCCCAGCAATTTGGT  650

seq1  GCGGGAGTGGGGGTGGGGCATCCTGAGAGCTTGCTTCTGGTTAGCATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGTGGGGGTGGGGCATCCTGAGAGCTTGCTTCTGGTTAGCATGGC  700

seq1  TGAAAAGGTGAGCAACTGGTTCTGTGAGAGACCCTGTGTCAAAGGGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGTGAGCAACTGGTTCTGTGAGAGACCCTGTGTCAAAGGGATAT  750

seq1  AAGGCAGAGAGAGAGAGGGAGGACACCTGAAGGCTTCCTCTGGCTTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGAGAGAGAGGGAGGACACCTGAAGGCTTCCTCTGGCTTCCAC  800

seq1  ATCCATTGATGCACTGTGTATACCTGCACACACGTATGTGGACCAGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGATGCACTGTGTATACCTGCACACACGTATGTGGACCAGAGGT  850

seq1  CCCATATAGAATAGAAAAGTAGGGGGTACTGATGCTCACAGACAACCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATAGAATAGAAAAGTAGGGGGTACTGATGCTCACAGACAACCTTC  900

seq1  CAGGGAACAGGGAGGAGATGTGTCAGGATGCTGCATGCATCAAACTTGG-  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  CAGGGAACAGGGAGGAGATGTGTCA-GATGCTGCATGCATCAAACTTGGT  949

seq1  CCTCCCACCCCAAGGACAAAGACCTTAAACTCTAGTAC-GTGGCTGTC-C  997
      |||||||| || || || |||| ||||||||||||||| ||||||||| |
seq2  CCTCCCACTCCCAGAAC-AAGAACTTAAACTCTAGTACGGTGGCTGTCTC  998

seq1  AGGATAGC-TCACA-TCT-GTTTCCTGATCTAGGCAGACCTG-CATCCTG  1043
      ||| |||| ||| | ||| ||||| |||||||||| |||||| |||||||
seq2  AGG-TAGCTTCAGATTCTGGTTTCTTGATCTAGGCCGACCTGCCATCCTG  1047

seq1  TACCTCCATTTCCACCACTGTGAAATGGAG-ATGTCCTTGTGTCCCCTTC  1092
      |||||||||||||||||||| ||||||||| |||| | |||||  |||||
seq2  TACCTCCATTTCCACCACTGCGAAATGGAGAATGTGCCTGTGT-GCCTTC  1096

seq1  CAGTCTGCACGGAGGACAGGTGAAGCAGCCAGCACAGGAAGTGTGGGACG  1142
      ||| |||||||   ||||||||||||| ||||| ||||||| |||| |||
seq2  CAGACTGCACGAGAGACAGGTGAAGCAACCAGCCCAGGAAGGGTGGAACG  1146

seq1  G-CTGCCC  1149
      |  |||||
seq2  GTTTGCCC  1154

seq1: chr11_118566034_118566852
seq2: B6Ng01-012D07.g_67_885 (reverse)

seq1  TCCTGAGTCTGCTCAGTCACGTGGGTAGCCCCAAGACACCTGCTATT-CC  49
      ||||| ||||||||| |||  |||||||||||||||| ||||||||| ||
seq2  TCCTGTGTCTGCTCAATCAAATGGGTAGCCCCAAGACCCCTGCTATTCCC  50

seq1  CACTATTCCCAGATGTGCAGTACCCCCTCCTCCCCGTGGTGGGGTTAATG  99
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACTATTCCCAGATGTGCAGTA-CCCCTCCTCCCCGTGGTGGGGTTAATG  99

seq1  TCTACGTGTCATTACTAATCATTAGTATAATTATTTTTAGTTCTGCAGAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTGTCATTACTAATCATTAGTATAATTATTTTTAGTTCTGCAGAC  149

seq1  GTGCCCCGTGTTTCTGCAAGGTATCCTTGATCCTCTGGAAGTAAAATTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCGTGTTTCTGCAAGGTATCCTTGATCCTCTGGAAGTAAAATTAA  199

seq1  AGGATGTAATTATCTCATTTCAGAGAGAACTGGGCCTGGCTCATCATCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTAATTATCTCATTTCAGAGAGAACTGGGCCTGGCTCATCATCAC  249

seq1  CTAATGGTCCTCCCCCTCCCCTACAGCAGGGTTATTAATGGGTGCTCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGTCCTCCCCCTCCCCTACAGCAGGGTTATTAATGGGTGCTCTTG  299

seq1  CTAATAGACCACCCCTTTAATGAGGGCTCTTCCTTTCCCTTCCCACGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGACCACCCCTTTAATGAGGGCTCTTCCTTTCCCTTCCCACGTCA  349

seq1  CCCCTCGTGTTTCTAAATGGGATCATTCTGACTCCGGGATTCCATGTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGTGTTTCTAAATGGGATCATTCTGACTCCGGGATTCCATGTCTC  399

seq1  TGTCAACTGGAACATTACCCATGATCCATTTCACTTTAAAAAAAAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTGGAACATTACCCATGATCCATTTCACTTTAAAAAAAAAAAAA  449

seq1  AAAGAAGAAGAAGAAATATTCCAATAATGGGCACAAGGTACCATGGGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGAAGAAATATTCCAATAATGGGCACAAGGTACCATGGGAAA  499

seq1  GGAGCCGTGAGGCTCAACCTTCTTGGCCAACTTAATGGGGTTTGGAATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCGTGAGGCTCAACCTTCTTGGCCAACTTAATGGGGTTTGGAATCA  549

seq1  CCAGGGAAACACACCAGCCCGTGTGTCTATGAGGGTGTTTCCAGAGAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAACACACCAGCCCGTGTGTCTATGAGGGTGTTTCCAGAGAGGT  599

seq1  TTGGCTGAGGCGAGAAGACCCACCCCAAATGTGAGCAACAGCATCCCACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAGGCGAGAAGACCCACCCCAAATGTGAGCAACAGCATCCCACG  649

seq1  GACCAGGGTCACCAACAGAATAAAACAAGAAAGTGAGCTGAGAGCCAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGGTCACCAACAGAATAAAACAAGAAAGTGAGCTGAGAGCCAGTA  699

seq1  CCAATAGAAAGCAAAGAGAGGGCTGGGGCACGGCTCCATCAGCAGAAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGAAAGCAAAGAGAGGGCTGGGGCACGGCTCCATCAGCAGAAGGT  749

seq1  CTGCCTGGTATGCACAAGTGCGAGCAATCTCCAGGGCAGCAGCGAAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGTATGCACAAGTGCGAGCAATCTCCAGGGCAGCAGCGAAATGA  799

seq1  ACCCAAATTACAGTGAATTC  819
      ||||||||||||||||||||
seq2  ACCCAAATTACAGTGAATTC  819