BAC Information

Click to search

BAC

Clone NameB6Ng01-014B09
Chromosome11 (Build37)
Map Location 66,078,994 - 66,178,456
singlet/doubletdoublet
Overlap geneGm879
Upstream geneMyocd, Map2k4, Zkscan6, Dnahc9
Downstream geneLOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014B09.bB6Ng01-014B09.g
ACCDH848730DH848731
length1121,128
definitionDH848730|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B09, 5' end.DH848731|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,178,345 - 66,178,456)(66,078,994 - 66,080,120)
sequence
ttttgaaagctttatatgtacacttcctttcttagttctatcaacattgt
atatacagcagttggtttactaacactgtcttcatccatgactatatgtg
tgtgtgtgtgtg
gaattctctttgggaatcctctgtacacagatggccttaataattgacac
ttctctcccacagcttctaactgtgtgatttaaaagtctggtctgcagcc
aaaacaacacaactggtatgcattccatagataaagcagtctcctgatgc
taaaaaatgaaggggatggagagagtgtgatctctgaacatatgaactaa
catgcccacttagttctgagaaatgacatggtggctggcccatgtcagaa
acatgttcagcatctgtctttatgtcacttaatcagaccatgtatatgag
gtgcagctatcacaagagggactctgagagcgtatcaagggcatagggct
cctctgtgcaacattctggcaactggtacaggaagggggaagaagagagg
atgatacatactatagccaaccaggacctgaggcatgggccagcctctct
tcctctcattcttccctgttctgtgacattgagagagtctgtagttctcc
tggaccccgtagaacacattttcatttggacttcagaccagaaaatatag
ccagtgacacccctcagtctactggctccatagacagagcagaggaagaa
gagagcaaagagaaatgctgggtggaaaggcagactgccccaaagtcaca
tagctgggtcctccctgactccaagactctttactcaacgcacatataag
acagttgaggacagaagggctttgttctgggctttgggcttctcagagtt
aaagctgtgaaaagtctgcaggaggctagtcagcaccttgccagttcctt
acctgtttgtaacttttgcttttattttattctagaagccttatctctca
gtgaaccatagactatggagctcagaaatagcaggtccccttcaccagag
ggttcagtcctcagccagtaacagttcgttgaagaatggacatttgatga
tagtatggctggcttcggactgaaggcccttgacccatagcttccaacgt
cttgcctgtcatcacattttccaagtgatctgacacacaggcagttccag
tggcttcgaaggaggtgtcttgattttattcctcccagccttatacagta
cctgcctcatgtgtgtccctcactccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_66178345_66178456
seq2: B6Ng01-014B09.b_50_161 (reverse)

seq1  CACACACACACACACATATAGTCATGGATGAAGACAGTGTTAGTAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACATATAGTCATGGATGAAGACAGTGTTAGTAAACCA  50

seq1  ACTGCTGTATATACAATGTTGATAGAACTAAGAAAGGAAGTGTACATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTATATACAATGTTGATAGAACTAAGAAAGGAAGTGTACATATA  100

seq1  AAGCTTTCAAAA  112
      ||||||||||||
seq2  AAGCTTTCAAAA  112

seq1: chr11_66078994_66080120
seq2: B6Ng01-014B09.g_69_1196

seq1  GAATTCTCTTTGGGAATCCTCTGTACACAGATGGCCTTAATAATTGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGGAATCCTCTGTACACAGATGGCCTTAATAATTGACAC  50

seq1  TTCTCTCCCACAGCTTCTAACTGTGTGATTTAAAAGTCTGGTCTGCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCACAGCTTCTAACTGTGTGATTTAAAAGTCTGGTCTGCAGCC  100

seq1  AAAACAACACAACTGGTATGCATTCCATAGATAAAGCAGTCTCCTGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACACAACTGGTATGCATTCCATAGATAAAGCAGTCTCCTGATGC  150

seq1  TAAAAAATGAAGGGGATGGAGAGAGTGTGATCTCTGAACATATGAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGAAGGGGATGGAGAGAGTGTGATCTCTGAACATATGAACTAA  200

seq1  CATGCCCACTTAGTTCTGAGAAATGACATGGTGGCTGGCCCATGTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCACTTAGTTCTGAGAAATGACATGGTGGCTGGCCCATGTCAGAA  250

seq1  ACATGTTCAGCATCTGTCTTTATGTCACTTAATCAGACCATGTATATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCAGCATCTGTCTTTATGTCACTTAATCAGACCATGTATATGAG  300

seq1  GTGCAGCTATCACAAGAGGGACTCTGAGAGCGTATCAAGGGCATAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCTATCACAAGAGGGACTCTGAGAGCGTATCAAGGGCATAGGGCT  350

seq1  CCTCTGTGCAACATTCTGGCAACTGGTACAGGAAGGGGGAAGAAGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGCAACATTCTGGCAACTGGTACAGGAAGGGGGAAGAAGAGAGG  400

seq1  ATGATACATACTATAGCCAACCAGGACCTGAGGCATGGGCCAGCCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACATACTATAGCCAACCAGGACCTGAGGCATGGGCCAGCCTCTCT  450

seq1  TCCTCTCATTCTTCCCTGTTCTGTGACATTGAGAGAGTCTGTAGTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCATTCTTCCCTGTTCTGTGACATTGAGAGAGTCTGTAGTTCTCC  500

seq1  TGGACCCCGTAGAACACATTTTCATTTGGACTTCAGACCAGAAAATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCGTAGAACACATTTTCATTTGGACTTCAGACCAGAAAATATAG  550

seq1  CCAGTGACACCCCTCAGTCTACTGGCTCCATAGACAGAGCAGAGGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACACCCCTCAGTCTACTGGCTCCATAGACAGAGCAGAGGAAGAA  600

seq1  GAGAGCAAAGAGAAATGCTGGGTGGAAAGGCAGACTGCCCCAAAGTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAAGAGAAATGCTGGGTGGAAAGGCAGACTGCCCCAAAGTCACA  650

seq1  TAGCTGGGTCCTCCCTGACTCCAAGACTCTTTACTCAACGCACATATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGTCCTCCCTGACTCCAAGACTCTTTACTCAACGCACATATAAG  700

seq1  ACAGTTGAGGACAGAAGGGCTTTGTTCTGGGCTTTGGGCTTCTCAGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGAGGACAGAAGGGCTTTGTTCTGGGCTTTGGGCTTCTCAGAGTT  750

seq1  AAAGCTGTGAAAAGTCTGCAGGAGGCTAGTCAGCACCTTGCCAGTTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTGAAAAGTCTGCAGGAGGCTAGTCAGCACCTTGCCAGTTCCTT  800

seq1  ACCTGTTTGTAACTTTTGCTTTTATTTTATTCTAGAAGCCTTATCTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTGTAACTTTTGCTTTTATTTTATTCTAGAAGCCTTATCTCTCA  850

seq1  GTGAACCATAGACTATGGAGCTCAG-AATAGCAGGTCACCTTCACCAGAG  899
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  GTGAACCATAGACTATGGAGCTCAGAAATAGCAGGTCCCCTTCACCAGAG  900

seq1  GGTTCAGGTCCTCAGCCAGTAACAGTTCGTTGAAGAATGGACATTTTGAT  949
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTTCA-GTCCTCAGCCAGTAACAGTTCGTTGAAGAATGGACA-TTTGAT  948

seq1  GATAGTAATGGCTGGCTTCGGACTGAAGGCCCTTTGACCCAATAGCTTCC  999
      |||||| ||||||||||||||||||||||||| ||||||| |||||||||
seq2  GATAGT-ATGGCTGGCTTCGGACTGAAGGCCC-TTGACCC-ATAGCTTCC  995

seq1  AAACGTC-TGCCTGTCAATCACATTTTCCAAGTGATTCTGACACACAGGC  1048
       |||||| |||||||| |||||||||||||||||| ||||||||||||||
seq2  -AACGTCTTGCCTGTC-ATCACATTTTCCAAGTGA-TCTGACACACAGGC  1042

seq1  AG-TCCAGGTGCTTCAGAGGAGGTGTC-TGATATTAT--CT-CCAG-CTT  1092
      || |||||  |||||  |||||||||| |||| ||||  || |||| |||
seq2  AGTTCCAGTGGCTTCGAAGGAGGTGTCTTGATTTTATTCCTCCCAGCCTT  1092

seq1  ATACAGTACCTG-CTCATGT-TGTCCCCATC-CTCCCT  1127
      |||||||||||| ||||||| ||||||  || ||||||
seq2  ATACAGTACCTGCCTCATGTGTGTCCC--TCACTCCCT  1128