BAC Information

Click to search

BAC

Clone NameB6Ng01-015J21
Chromosome11 (Build37)
Map Location 69,673,922 - 69,831,751
singlet/doubletdoublet
Overlap geneLOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl
Upstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1
Downstream geneDlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015J21.bB6Ng01-015J21.g
ACCDH849824DH849825
length467779
definitionDH849824|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J21, 5' end.DH849825|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,673,922 - 69,674,394)(69,830,974 - 69,831,751)
sequence
tcagcagtatctcttcttattgcctactaaatgctataattacataccta
gtctgcttttctttagatgtgggagtatactaaaatgaccatattgcagg
gataaagacaaactcctgtgatctcagtgttcagaggctgaggtagggtt
taagtttacagatggttgtgagccaccatgtgattgctggaaattgaact
caggaccttgggaagagcaatcagtgttcttaaccactgaaccatctctc
cagcccatttatttgtttgtttgtttttctagacagggtttctctgtata
gccctggctgtcctggaactcactctgtagaccaggctggccttgaactc
agaaatctgcctgcctctgcctctgcctctgcctctgcctctgcctctgc
ctctgcctttgcctctgcctctgcctctgcctctgcctctgcctctgcct
ctgcctctgcctctgcc
gaattcctccttagaggaaaaaagcccacagctgggaggggagcatccct
ccttggttgagtgcaggagggaggccatagcgtggggtaaggggttgagg
gaggggctggcagtagagaatcttggggacctagttctcccctaggagtc
acaggaagaagtctgaaaagtaattaagtatgacctggacttcctggtat
tgaaattggggcaatgcaagaaaggggagaagaaaggagaaagggcatag
ggctggctgcccacagacagcactgctggtgccccaactcctcagtcagt
actagggatcatgttgcctgggcccctaagtctcagtttagaattagaag
aatgtactcttgtccctccagtcctgccagctcaggcagtcaggaagcca
ggcacccaccgtcatcaccttacctgactctctgagatacaagcctcata
atagtccaggatgtctgtcacaggaacagaattaagtcaccctcccaaat
cccggggccctctggccacccctgctacccctggcttctgtgtgtcaaga
gaggctcctccggctaggatggatgctgctaggaggtacagtgtgatggc
tctatacaagcgagagcctggactagatgctctgagtattttccaaccag
cctagaacctgtaatgcttgaccccataccacaggccagccctgttcact
gtggcccctcagaacaccagccttactcacccagcaaggcctggaagaga
tcactgtgcagcactgtgaggaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69673922_69674394
seq2: B6Ng01-015J21.b_43_515

seq1  GAATTCTCAGCAGTATCTCTTCTTATTGCCTACTAAATGCTATAATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAGTATCTCTTCTTATTGCCTACTAAATGCTATAATTACA  50

seq1  TACCTAGTCTGCTTTTCTTTAGATGTGGGAGTATACTAAAATGACCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGTCTGCTTTTCTTTAGATGTGGGAGTATACTAAAATGACCATAT  100

seq1  TGCAGGGATAAAGACAAACTCCTGTGATCTCAGTGTTCAGAGGCTGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGATAAAGACAAACTCCTGTGATCTCAGTGTTCAGAGGCTGAGGT  150

seq1  AGGGTTTAAGTTTACAGATGGTTGTGAGCCACCATGTGATTGCTGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTAAGTTTACAGATGGTTGTGAGCCACCATGTGATTGCTGGAAAT  200

seq1  TGAACTCAGGACCTTGGGAAGAGCAATCAGTGTTCTTAACCACTGAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCTTGGGAAGAGCAATCAGTGTTCTTAACCACTGAACCA  250

seq1  TCTCTCCAGCCCATTTATTTGTTTGTTTGTTTTTCTAGACAGGGTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCCCATTTATTTGTTTGTTTGTTTTTCTAGACAGGGTTTCTC  300

seq1  TGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTT  350

seq1  GAACTCAGAAATCTGCCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCTGCCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGC  400

seq1  CTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTGCCTTTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT  450

seq1  CTGCCTCTGCCTCTGCCTCTGCC  473
      |||||||||||||||||||||||
seq2  CTGCCTCTGCCTCTGCCTCTGCC  473

seq1: chr11_69830974_69831751
seq2: B6Ng01-015J21.g_68_846 (reverse)

seq1  CCTCCCCTCCTCACAGTGCTGCACAGTGATCTCTTCCAGGCCTTGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCCTCACAGTGCTGCACAGTGATCTCTTCCAGGCCTTGCTGGG  50

seq1  TGAGTAAGGCTGGTGTTCTGAGGGGCCACAGTGGACAGGGCTGGCCTGTG  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAGTAAGGCTGGTGTTCTGAGGGGCCACAGTGAACAGGGCTGGCCTGTG  100

seq1  GTATGGGGTCAAGCATTACAGGTTCTAGGCTGGTTGG-AAATACTCAGAG  149
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTATGGGGTCAAGCATTACAGGTTCTAGGCTGGTTGGAAAATACTCAGAG  150

seq1  CATCTAGTCCAGGCTCTCGCTTGTATAGAGCCATCACACTGTACCTCCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTCCAGGCTCTCGCTTGTATAGAGCCATCACACTGTACCTCCTA  200

seq1  GCAGCATCCATCCTAGCCGGAGGAGCCTCTCTTGACACACAGAAGCCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCCATCCTAGCCGGAGGAGCCTCTCTTGACACACAGAAGCCAGG  250

seq1  GGTAGCAGGGGTGGCCAGAGGGCCCCGGGATTTGGGAGGGTGACTTAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAGGGGTGGCCAGAGGGCCCCGGGATTTGGGAGGGTGACTTAATT  300

seq1  CTGTTCCTGTGACAGACATCCTGGACTATTATGAGGCTTGTATCTCAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTGTGACAGACATCCTGGACTATTATGAGGCTTGTATCTCAGAG  350

seq1  AGTCAGGTAAGGTGATGACGGTGGGTGCCTGGCTTCCTGACTGCCTGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTAAGGTGATGACGGTGGGTGCCTGGCTTCCTGACTGCCTGAGC  400

seq1  TGGCAGGACTGGAGGGACAAGAGTACATTCTTCTAATTCTAAACTGAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGACTGGAGGGACAAGAGTACATTCTTCTAATTCTAAACTGAGAC  450

seq1  TTAGGGGCCCAGGCAACATGATCCCTAGTACTGACTGAGGAGTTGGGGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCCCAGGCAACATGATCCCTAGTACTGACTGAGGAGTTGGGGCA  500

seq1  CCAGCAGTGCTGTCTGTGGGCAGCCAGCCCTATGCCCTTTCTCCTTTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTGCTGTCTGTGGGCAGCCAGCCCTATGCCCTTTCTCCTTTCTT  550

seq1  CTCCCCTTTCTTGCATTGCCCCAATTTCAATACCAGGAAGTCCAGGTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTTCTTGCATTGCCCCAATTTCAATACCAGGAAGTCCAGGTCAT  600

seq1  ACTTAATTACTTTTCAGACTTCTTCCTGTGACTCCTAGGGGAGAACTAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTACTTTTCAGACTTCTTCCTGTGACTCCTAGGGGAGAACTAGG  650

seq1  TCCCCAAGATTCTCTACTGCCAGCCCCTCCCTCAACCCCTTACCCCACGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGATTCTCTACTGCCAGCCCCTCCCTCAACCCCTTACCCCACGC  700

seq1  TATGGCCTCCCTCCTGCACTCAACCAAGGAGGGATGCTCCCCTCCCAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCTCCCTCCTGCACTCAACCAAGGAGGGATGCTCCCCTCCCAGCT  750

seq1  GTGGGCTTTTTTCCTCTAAGGAGGAATTC  778
      |||||||||||||||||||||||||||||
seq2  GTGGGCTTTTTTCCTCTAAGGAGGAATTC  779