BAC Information

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BAC

Clone NameB6Ng01-016H10
Chromosome11 (Build37)
Map Location 26,019,912 - 26,193,011
singlet/doubletdoublet
Overlap gene5730522E02Rik, LOC100042345
Upstream geneLOC100042328
Downstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016H10.bB6Ng01-016H10.g
ACCDH850418DH850419
length1,1901,122
definitionDH850418|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H10, 5' end.DH850419|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,191,811 - 26,193,011)(26,019,912 - 26,021,040)
sequence
gaattcacaaaaaatggaaaggaatatgaaaagcagtactttgatggaga
aatttttatggcattttaataagtgttaattctcggtagaaagatatata
gtgttattttatgtaccttagttgtcatgttttccaatatcttggtaata
taactgaataagtactcctcaaataagaatatgttcattttcgcagcact
tataatcaagtaaagtattaattcccaagttttatggagatatttcacat
gttatcttaattttaaaatctgctttttctttggaggaacagaactagat
aaactgtgtcgttatcaagaaaatattaagaaacagtacataatcccttt
aataaaatccaggaatgttgaatatactgcagcccacccaaccctgtagc
atgaagtttccccaacttatattccttttttgtgcttcaaagacttgtgt
gggtcactcttatggtaatgtttatatgttgacttgcttatcccacaata
gtattatgactggttatcacattctaaactgccagactctgtttaattgt
aatggtgcttacttttttatagaaactattcatattttattactgtaaac
aactttgatcataatgatgccattcaaaagagctgatcaagctgagaaaa
atggcagtacagtcgtaaagccactctatatgtagctattaacattttta
tagtgcatataaggaaaagggttttaagttgcaaccatagacaaataaga
aaataatttaaaacatgttatcctttcaaagattagaaatatgctaccta
aataatcattaccaacagacacttttagattctagcagatgaccttcacg
acaaagaacagtatatagacaatttgcattagaaagattcgaatgatctt
acttcgctaggttagaaaacaagggctttcacgtcaaagctattctctgg
gtatatttcagaaggcaccaacctaagagaggagttttagagacatattc
tttggcactactaggatccacgctctcttcagatgaatcaaagcactagg
aggtgcgtgccacaaagagagcgtgctgtaaagtacagctgaaaactggc
cttctgacacagctagctcatattccagttcaggagagatgggattacaa
caatttatacctgagaatcctagttccaaatatttaaaaa
gaattcttgcatgctttaataactatttagcaatactttagatttttcac
agtggagataaacaaagggaaatttatttaacttctctttcctaagtaga
ctttgtgttttgctcagtttaggtgcactttggtgggaatcaccttctct
ggcctttcatggatatcacagtttcccccaaacacttacaggctgtgcaa
tgctgctataatttacagtgtttcctatggaaactcttctgctctcttgg
aggactttggaagtcatagggaagcctttaacaggacacaaaggcaagtc
agccttgcttttgtcaatgggaagcaagtgtctggcgcacacagttaact
tgtgggtaatccttgtccaataaaaagtggaaatgcatacttttgaaaat
cactatgattcttctagtatgaattgaacttcacaaattatacaacagat
cttatactctccaaatggaaataagacgttgaaggtacaaaatggctcct
aacacaacaaaaacctagctcttaaatgtacagactttctgttgtctcta
caagctgtctttctatgggcaaatcaggcttccttcactgatatctctaa
aaattgaaataatggtaagaacttttcactgtttacatagtttaaaatta
aaaatggcaaataaatcattcatatattaagaacgattaccccagcatgt
aataaggtaattctgcattaccttagatatattacccacaatgcttttca
gcacagcagctaattaccagcagaaaggtcatacaaaaaaaaaataatgt
gattagaagaggttgagaaaaaaatagccacatatttggacatagaccaa
attcccttttgccactgtaactgaaaaccatttcttcaatatttaatgaa
acgcttatgctacagcacctggtcacattgtcagcctaccctaccactgg
cctcccccgtgggccgttactgcagccatctgaaagggggaaacttgtca
tcaagacaataatgccagtcttaagaatctacagctacaaaacagcagag
aacagagttgctttggatcttggaaatggctggggcaaatgctggtttcc
accatacagagaacgtgtacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26191811_26193011
seq2: B6Ng01-016H10.b_33_1222 (reverse)

seq1  TTTTTAAATATTTGTGGACTAGAGATTCT-AGTTATTAATTGTTTGTTTA  49
      |||||||||||||| | ||||| |||||| || ||| |||||||   | |
seq2  TTTTTAAATATTTG-GAACTAG-GATTCTCAGGTATAAATTGTT--GTAA  46

seq1  TCTCATCTCTCCTGACCTGGATTATGAGCTCGCTGTGTCAG-AGGCCATG  98
      || |||||||||||| ||||| |||||||| |||||||||| |||||| |
seq2  TCCCATCTCTCCTGAACTGGAATATGAGCTAGCTGTGTCAGAAGGCCA-G  95

seq1  TTCTCAGCTGTACTTTACAGCACGCTCTCTCTGTGGCACGCACCTCCTAA  148
      || ||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TTTTCAGCTGTACTTTACAGCACGCTCTCTTTGTGGCACGCACCTCCT-A  144

seq1  GTGCCTTTGATTTCATCTGAAGAGAGCGTTGGATCCTAGTAGTGCCAAAA  198
      ||| |||||| ||||||||||||||||| ||||||||||||||||| |||
seq2  GTG-CTTTGA-TTCATCTGAAGAGAGCG-TGGATCCTAGTAGTGCC-AAA  190

seq1  GAATATGTCTCTTAAAACTCCTTCTCTATAGGTTGGTGCCTTCTGGAATA  248
      ||||||||||| ||||||||| ||||| ||||||||||||||||| ||||
seq2  GAATATGTCTC-TAAAACTCC-TCTCT-TAGGTTGGTGCCTTCTGAAATA  237

seq1  TAACCAGAGAATAGCTTTGACGTGAAAGCCCTTGTTTTCTAACCTAGCGA  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAGAATAGCTTTGACGTGAAAGCCCTTGTTTTCTAACCTAGCGA  287

seq1  AGTAAGATCATTCGAATCTTTCTAATGCAAATTGTCTATATACTGTTCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATCATTCGAATCTTTCTAATGCAAATTGTCTATATACTGTTCTT  337

seq1  TGTCGTGAAGGTCATCTGCTAGAATCTAAAAGTGTCTGTTGGTAATGATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTGAAGGTCATCTGCTAGAATCTAAAAGTGTCTGTTGGTAATGATT  387

seq1  ATTTAGGTAGCATATTTCTAATCTTTGAAAGGATAACATGTTTTAAATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTAGCATATTTCTAATCTTTGAAAGGATAACATGTTTTAAATTA  437

seq1  TTTTCTTATTTGTCTATGGTTGCAACTTAAAACCCTTTTCCTTATATGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTTGTCTATGGTTGCAACTTAAAACCCTTTTCCTTATATGCA  487

seq1  CTATAAAAATGTTAATAGCTACATATAGAGTGGCTTTACGACTGTACTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAATGTTAATAGCTACATATAGAGTGGCTTTACGACTGTACTGC  537

seq1  CATTTTTCTCAGCTTGATCAGCTCTTTTGAATGGCATCATTATGATCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTCAGCTTGATCAGCTCTTTTGAATGGCATCATTATGATCAAA  587

seq1  GTTGTTTACAGTAATAAAATATGAATAGTTTCTATAAAAAAGTAAGCACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTACAGTAATAAAATATGAATAGTTTCTATAAAAAAGTAAGCACC  637

seq1  ATTACAATTAAACAGAGTCTGGCAGTTTAGAATGTGATAACCAGTCATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATTAAACAGAGTCTGGCAGTTTAGAATGTGATAACCAGTCATAA  687

seq1  TACTATTGTGGGATAAGCAAGTCAACATATAAACATTACCATAAGAGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGTGGGATAAGCAAGTCAACATATAAACATTACCATAAGAGTGA  737

seq1  CCCACACAAGTCTTTGAAGCACAAAAAAGGAATATAAGTTGGGGAAACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACAAGTCTTTGAAGCACAAAAAAGGAATATAAGTTGGGGAAACTT  787

seq1  CATGCTACAGGGTTGGGTGGGCTGCAGTATATTCAACATTCCTGGATTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTACAGGGTTGGGTGGGCTGCAGTATATTCAACATTCCTGGATTTT  837

seq1  ATTAAAGGGATTATGTACTGTTTCTTAATATTTTCTTGATAACGACACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGGATTATGTACTGTTTCTTAATATTTTCTTGATAACGACACAG  887

seq1  TTTATCTAGTTCTGTTCCTCCAAAGAAAAAGCAGATTTTAAAATTAAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTAGTTCTGTTCCTCCAAAGAAAAAGCAGATTTTAAAATTAAGAT  937

seq1  AACATGTGAAATATCTCCATAAAACTTGGGAATTAATACTTTACTTGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGAAATATCTCCATAAAACTTGGGAATTAATACTTTACTTGATT  987

seq1  ATAAGTGCTGCGAAAATGAACATATTCTTATTTGAGGAGTACTTATTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGCTGCGAAAATGAACATATTCTTATTTGAGGAGTACTTATTCAG  1037

seq1  TTATATTACCAAGATATTGGAAAACATGACAACTAAGGTACATAAAATAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTACCAAGATATTGGAAAACATGACAACTAAGGTACATAAAATAA  1087

seq1  CACTATATATCTTTCTACCGAGAATTAACACTTATTAAAATGCCATAAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATATCTTTCTACCGAGAATTAACACTTATTAAAATGCCATAAAA  1137

seq1  ATTTCTCCATCAAAGTACTGCTTTTCATATTCCTTTCCATTTTTTGTGAA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCATCAAAGTACTGCTTTTCATATTCCTTTCCATTTTTTGTGAA  1187

seq1  TTC  1201
      |||
seq2  TTC  1190

seq1: chr11_26019912_26021040
seq2: B6Ng01-016H10.g_67_1188

seq1  GAATTCTTGCATGCTTTAATAACTATTTAGCAATACTTTAGATTTTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATGCTTTAATAACTATTTAGCAATACTTTAGATTTTTCAC  50

seq1  AGTGGAGATAAACAAAGGGAAATTTATTTAACTTCTCTTTCCTAAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGATAAACAAAGGGAAATTTATTTAACTTCTCTTTCCTAAGTAGA  100

seq1  CTTTGTGTTTTGCTCAGTTTAGGTGCACTTTGGTGGGAATCACCTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTTTGCTCAGTTTAGGTGCACTTTGGTGGGAATCACCTTCTCT  150

seq1  GGCCTTTCATGGATATCACAGTTTCCCCCAAACACTTACAGGCTGTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCATGGATATCACAGTTTCCCCCAAACACTTACAGGCTGTGCAA  200

seq1  TGCTGCTATAATTTACAGTGTTTCCTATGGAAACTCTTCTGCTCTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTATAATTTACAGTGTTTCCTATGGAAACTCTTCTGCTCTCTTGG  250

seq1  AGGACTTTGGAAGTCATAGGGAAGCCTTTAACAGGACACAAAGGCAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTGGAAGTCATAGGGAAGCCTTTAACAGGACACAAAGGCAAGTC  300

seq1  AGCCTTGCTTTTGTCAATGGGAAGCAAGTGTCTGGCGCACACAGTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTTTTGTCAATGGGAAGCAAGTGTCTGGCGCACACAGTTAACT  350

seq1  TGTGGGTAATCCTTGTCCAATAAAAAGTGGAAATGCATACTTTTGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTAATCCTTGTCCAATAAAAAGTGGAAATGCATACTTTTGAAAAT  400

seq1  CACTATGATTCTTCTAGTATGAATTGAACTTCACAAATTATACAACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGATTCTTCTAGTATGAATTGAACTTCACAAATTATACAACAGAT  450

seq1  CTTATACTCTCCAAATGGAAATAAGACGTTGAAGGTACAAAATGGCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTCTCCAAATGGAAATAAGACGTTGAAGGTACAAAATGGCTCCT  500

seq1  AACACAACAAAAACCTAGCTCTTAAATGTACAGACTTTCTGTTGTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACAAAAACCTAGCTCTTAAATGTACAGACTTTCTGTTGTCTCTA  550

seq1  CAAGCTGTCTTTCTATGGGCAAATCAGGCTTCCTTCACTGATATCTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTCTTTCTATGGGCAAATCAGGCTTCCTTCACTGATATCTCTAA  600

seq1  AAATTGAAATAATGGTAAGAACTTTTCACTGTTTACATAGTTTAAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAATAATGGTAAGAACTTTTCACTGTTTACATAGTTTAAAATTA  650

seq1  AAAATGGCAAATAAATCATTCATATATTAAGAACGATTACCCCAGCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCAAATAAATCATTCATATATTAAGAACGATTACCCCAGCATGT  700

seq1  AATAAGGTAATTCTGCATTACCTTAGATATATTACCCACAATGCTTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGTAATTCTGCATTACCTTAGATATATTACCCACAATGCTTTTCA  750

seq1  GCACAGCAGCTAATTACCAGCAGAAAGGTCATACAAAAAAAAAATAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGCTAATTACCAGCAGAAAGGTCATACAAAAAAAAAATAATGT  800

seq1  GATTAGAAGAGGTTGAGAAAAAAATAGCCACATATTTGGACATAGACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAGAGGTTGAGAAAAAAATAGCCACATATTTGGACATAGACCAA  850

seq1  ATTCCCTTTTTGCCACTGTAACTGAAAACCATTTCTTCAATATTTAATGA  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCC-TTTTGCCACTGTAACTGAAAACCATTTCTTCAATATTTAATGA  899

seq1  AACGCTTATGCTACAGCACCTGGTCACATTGTCAGCCTACCCTAACCACT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACGCTTATGCTACAGCACCTGGTCACATTGTCAGCCTACCCT-ACCACT  948

seq1  -GCCTCCCCCGTGGGCCGTTACTGCAGCCATCTGAAAGGGGGAAACTGTT  999
       ||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GGCCTCCCCCGTGGGCCGTTACTGCAGCCATCTGAAAGGGGGAAACTTGT  998

seq1  CATCCAAGACAATAATGCCAGTCTTTAAGAATCTACAGCTACAAAACAGC  1049
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAT-CAAGACAATAATGCCAGTC-TTAAGAATCTACAGCTACAAAACAGC  1046

seq1  AGGAGACAGAGTTTTGGCTTT-GATCTTGGGAAAAATGGCTGGGGGCAAA  1098
      ||   ||||||||   ||||| ||||||||   ||||||||||||   ||
seq2  AGAGAACAGAGTT---GCTTTGGATCTTGG---AAATGGCTGGGG--CAA  1088

seq1  ATGCTGTTTCCTACCAT-CAGAGA--CTGTACAG  1129
      |||||| || | ||||| ||||||   |||||||
seq2  ATGCTGGTTTCCACCATACAGAGAACGTGTACAG  1122