BAC Information

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BAC

Clone NameB6Ng01-016H20
Chromosome11 (Build37)
Map Location 119,399,027 - 119,543,764
singlet/doubletdoublet
Overlap geneNptx1, 4932417H02Rik
Upstream geneD11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik
Downstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016H20.bB6Ng01-016H20.g
ACCDH850436DH850437
length6091,199
definitionDH850436|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H20, 5' end.DH850437|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,399,027 - 119,399,635)(119,542,549 - 119,543,764)
sequence
gaattcatccattcatgggatatggcaaaagagatcagatgtatcttttt
atgtgaatcaatcccaggcccccgagttcctgtacgtacccagcaggaat
gggtgaccatgggtattgaacctgggttactaagcacaccaggcccagta
tggccatatggggaatttggaaatctctttgtctctttgcctctatatca
gctgcctctgagagatgcagagctctcatcccacagcccagggggggtat
gggtctgtagaggggcacagagcaatgctaacacaaggccaaagtccatc
cctccctaatagatgaggtcacatgtcttagctcacaacattgacaagtt
ttagaaggaacagtgcaaggatggctagggcgatggctcagtgggtaaag
ggcccactgtgcaagcagggggagctgagctcagatcccagtcccccaca
taaaaaaaccagtggctgtaaccccagagcttggacaggggcagaggtag
gcagatccacaggactcattcattgaccatccaggctagatgaattggta
gtctccagtttcagtgggagaattgtttttaaaaataaggctgggtgggg
gtggggatg
gaattccatccagacccatgacatccagaaaacccaaggaagcccagggg
aaattctaaacatgactgggcaagaagcacagaaacatccaaccaacatg
tggccaaggtggctgcctctctctgtaaagaaggagcagagctttaaaaa
atgccagttacttctagttcccaattaatttgtttcttttctgaactgtg
catccatttgtagacaccctcatctagacactaacaaacacaacccacat
ttacttcctatgtgatgatgactcctatttgaggtgaaaataacatccat
acatcacctaagaattcattcaaagacagcccagcatctcagtgtttctg
ccctcatgtctccagagtgcaggagaaagcagttccttccccacagcctg
actttgtagaagggaaacaaaatctctgccattttgtcaatttcatgggg
cttgtaacccacaaatgacaacatacaaccacccatggcctgcaagctca
tgtcaggtattcacacagagaaatgaaacagtacacccacaggaagtcat
ttccacaaacagcagcgttattcataacaccaaacagcgggactgatcca
aatccacctgaggacattaatgcattcgggatcatccacagattccacac
agacagaagagaagaatgaactgctggtgcaggtgacaccaagaatgtac
tgagaggagaggcaaaggcaggccagcgactgcactgcatgaaggtcagg
acgggtcaaacaatcgaatgatagatggtggaggacagaggaagccagtg
aggctgggagcatggcttagaggtagccaaccatgtgcaaggccttgggt
tcaattcccaacctaacagcaaaagggcagaagaaagatgtgcaagtttt
aatgtgcttgttctaagtgctgattaaacagtaacacacaaccatcaaaa
ctcatcagctaaaacttctagctctgcatgttactgcatgtaaatgacat
ctaaaagctactttggtggaaaactgtagagtagcagaaaagaagatgag
ctaaattttcgagagctgtgacacatgcaaaagtgaacacagaaatagcc
ttttcgtggcaccagccagtctgagtgtgatccgtgagctgtgtgtgaaa
gtgattctcaagccaacaggcagacaaatgccagactgctcagcaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119399027_119399635
seq2: B6Ng01-016H20.b_44_652

seq1  GAATTCATCCATTCATGGGATATGGCAAAAGAGATCAGATGTATCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCATTCATGGGATATGGCAAAAGAGATCAGATGTATCTTTTT  50

seq1  ATGTGAATCAATCCCAGGCCCCCGAGTTCCTGTACGTACCCAGCAGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATCAATCCCAGGCCCCCGAGTTCCTGTACGTACCCAGCAGGAAT  100

seq1  GGGTGACCATGGGTATTGAACCTGGGTTACTAAGCACACCAGGCCCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACCATGGGTATTGAACCTGGGTTACTAAGCACACCAGGCCCAGTA  150

seq1  TGGCCATATGGGGAATTTGGAAATCTCTTTGTCTCTTTGCCTCTATATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATATGGGGAATTTGGAAATCTCTTTGTCTCTTTGCCTCTATATCA  200

seq1  GCTGCCTCTGAGAGATGCAGAGCTCTCATCCCACAGCCCAGGGGGGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCTGAGAGATGCAGAGCTCTCATCCCACAGCCCAGGGGGGGTAT  250

seq1  GGGTCTGTAGAGGGGCACAGAGCAATGCTAACACAAGGCCAAAGTCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTAGAGGGGCACAGAGCAATGCTAACACAAGGCCAAAGTCCATC  300

seq1  CCTCCCTAATAGATGAGGTCACATGTCTTAGCTCACAACATTGACAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTAATAGATGAGGTCACATGTCTTAGCTCACAACATTGACAAGTT  350

seq1  TTAGAAGGAACAGTGCAAGGATGGCTAGGGCGATGGCTCAGTGGGTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGAACAGTGCAAGGATGGCTAGGGCGATGGCTCAGTGGGTAAAG  400

seq1  GGCCCACTGTGCAAGCAGGGGGAGCTGAGCTCAGATCCCAGTCCCCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACTGTGCAAGCAGGGGGAGCTGAGCTCAGATCCCAGTCCCCCACA  450

seq1  TAAAAAAACCAGTGGCTGTAACCCCAGAGCTTGGACAGGGGCAGAGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAACCAGTGGCTGTAACCCCAGAGCTTGGACAGGGGCAGAGGTAG  500

seq1  GCAGATCCACAGGACTCATTCATTGACCATCCAGGCTAGATGAATTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCACAGGACTCATTCATTGACCATCCAGGCTAGATGAATTGGTA  550

seq1  GTCTCCAGTTTCAGTGGGAGAATTGTTTTTAAAAATAAGGCTGGGTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGTTTCAGTGGGAGAATTGTTTTTAAAAATAAGGCTGGGTGGGG  600

seq1  GTGGGGATG  609
      |||||||||
seq2  GTGGGGATG  609

seq1: chr11_119542549_119543764
seq2: B6Ng01-016H20.g_67_1265 (reverse)

seq1  GTATTGCTGAGCATGCTGTGGCATCTGGTCTGTGCCTTGTCTGGCCTGAG  50
      |||||||||||||   | |||||| | |||||   | ||| |||| ||||
seq2  GTATTGCTGAGCA--GTCTGGCAT-TTGTCTG---CCTGT-TGGCTTGAG  43

seq1  ACTCAACCCTTCACACCAGGGCTCAGCGATCCACACTCAGAACATTGGGG  100
      | |||  | |||||| ||  |||||  ||| ||||||||||       ||
seq2  AATCA--CTTTCACA-CACAGCTCACGGAT-CACACTCAGA-----CTGG  84

seq1  CTGGTGGCCACAGAAAGCCTA-TTCTGTGTTCACTCTTGCATGTGTCACA  149
      ||||| |||||  |||| ||| ||||||||||||| ||||||||||||||
seq2  CTGGT-GCCACGAAAAGGCTATTTCTGTGTTCACTTTTGCATGTGTCACA  133

seq1  GCTCTCGAAAATTTAGCTCATC-TCTTTTCTTGCTACTCTACATGTTTTC  198
      |||||||||||||||||||||| ||||||| |||||||||||| ||||||
seq2  GCTCTCGAAAATTTAGCTCATCTTCTTTTC-TGCTACTCTACA-GTTTTC  181

seq1  CCACCAAGTAGCTTTTAGATGTCATTTACATGCAGTAACATGCAGAGCTA  248
      |  | |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGTAGCTTTTAGATGTCATTTACATGCAGTAACATGCAGAGCTA  231

seq1  GAGTTTTTAGCTTGATGAGTTTTGATGGTTGTGTGTTACTGTTTAATCAG  298
      ||  ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTAGC-TGATGAGTTTTGATGGTTGTGTGTTACTGTTTAATCAG  280

seq1  CACTTAGAACAAGCACATTAAAACTTGCACATCTTTCTTCTGCCC-TTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTTAGAACAAGCACATTAAAACTTGCACATCTTTCTTCTGCCCTTTTG  330

seq1  CTGTTAGGTTGGGAATTGAACCCAAGGCCTTGCACATGGTTGGCTACCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGGTTGGGAATTGAACCCAAGGCCTTGCACATGGTTGGCTACCTC  380

seq1  TAAGCCATGCTCCCAGCCTCACTGGCTTCCTCTGTCCTCCACCATCTATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATGCTCCCAGCCTCACTGGCTTCCTCTGTCCTCCACCATCTATC  430

seq1  ATTCGATTGTTTGACCCGTCCTGACCTTCATGCAGTGCAGTCGCTGGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGATTGTTTGACCCGTCCTGACCTTCATGCAGTGCAGTCGCTGGCCT  480

seq1  GCCTTTGCCTCTCCTCTCAGTACATTCTTGGTGTCACCTGCACCAGCAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCCTCTCCTCTCAGTACATTCTTGGTGTCACCTGCACCAGCAGT  530

seq1  TCATTCTTCTCTTCTGTCTGTGTGGAATCTGTGGATGATCCCGAATGCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCTCTTCTGTCTGTGTGGAATCTGTGGATGATCCCGAATGCAT  580

seq1  TAATGTCCTCAGGTGGATTTGGATCAGTCCCGCTGTTTGGTGTTATGAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCTCAGGTGGATTTGGATCAGTCCCGCTGTTTGGTGTTATGAAT  630

seq1  AACGCTGCTGTTTGTGGAAATGACTTCCTGTGGGTGTACTGTTTCATTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGCTGTTTGTGGAAATGACTTCCTGTGGGTGTACTGTTTCATTTC  680

seq1  TCTGTGTGAATACCTGACATGAGCTTGCAGGCCATGGGTGGTTGTATGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGAATACCTGACATGAGCTTGCAGGCCATGGGTGGTTGTATGTT  730

seq1  GTCATTTGTGGGTTACAAGCCCCATGAAATTGACAAAATGGCAGAGATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGTGGGTTACAAGCCCCATGAAATTGACAAAATGGCAGAGATTT  780

seq1  TGTTTCCCTTCTACAAAGTCAGGCTGTGGGGAAGGAACTGCTTTCTCCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCTTCTACAAAGTCAGGCTGTGGGGAAGGAACTGCTTTCTCCTG  830

seq1  CACTCTGGAGACATGAGGGCAGAAACACTGAGATGCTGGGCTGTCTTTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGAGACATGAGGGCAGAAACACTGAGATGCTGGGCTGTCTTTGA  880

seq1  ATGAATTCTTAGGTGATGTATGGATGTTATTTTCACCTCAAATAGGAGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCTTAGGTGATGTATGGATGTTATTTTCACCTCAAATAGGAGTC  930

seq1  ATCATCACATAGGAAGTAAATGTGGGTTGTGTTTGTTAGTGTCTAGATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACATAGGAAGTAAATGTGGGTTGTGTTTGTTAGTGTCTAGATGA  980

seq1  GGGTGTCTACAAATGGATGCACAGTTCAGAAAAGAAACAAATTAATTGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCTACAAATGGATGCACAGTTCAGAAAAGAAACAAATTAATTGGG  1030

seq1  AACTAGAAGTAACTGGCATTTTTTAAAGCTCTGCTCCTTCTTTACAGAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGTAACTGGCATTTTTTAAAGCTCTGCTCCTTCTTTACAGAGA  1080

seq1  GAGGCAGCCACCTTGGCCACATGTTGGTTGGATGTTTCTGTGCTTCTTGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCCACCTTGGCCACATGTTGGTTGGATGTTTCTGTGCTTCTTGC  1130

seq1  CCAGTCATGTTTAGAATTTCCCCTGGGCTTCCTTGGGTTTTCTGGATGTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCATGTTTAGAATTTCCCCTGGGCTTCCTTGGGTTTTCTGGATGTC  1180

seq1  ATGGGTCTGGATGGAATTC  1216
      |||||||||||||||||||
seq2  ATGGGTCTGGATGGAATTC  1199