BAC Information

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BAC

Clone NameB6Ng01-016P08
Chromosome11 (Build37)
Map Location 88,643,326 - 88,644,509
singlet/doubletsinglet
Overlap genenone
Upstream geneMks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016P08.bB6Ng01-016P08.g
ACCDH850775DH850776
length1,1821,203
definitionDH850775|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P08, 5' end.DH850776|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggtttccatgcttgttcagcaagggctcttactcccttagcaa
gctctggctgtcgttgttacagaaattgacatactgattctaaaacttca
gtgaaatctgaaaagactcatgaatgagcaaacttggaagatctatgtcg
tcggggctcaagtctcacaacagtattaacataagggcacacagaaggat
tagccccgagggatagaccacgtaggagcaggtggctacatacagaacca
cagaaccacaactggtttagacgatgcttcaaaggtaactcaactgagaa
aaatcatgaacttttgcccataccctatggcactgaaaagctagctcaaa
tgaagcctatgtctatatatggaagctaaaactataaagcttcaagaata
aaacagggaaataggctgttggaatttgctaggatttcttaaaacacaaa
agtcactaatggggaaaaaaacaaactgcacctcatgaaaatttaaaact
tttggttttcgcgatgcatgattaagaaactgaaaagacaagccaccgac
tagaagttattttcaatacctacgtctgataaatgattcatactgtacga
tatataaagccttctaaaacatgaaaaaaataaaccaaacatggtgactc
acttctgcagttcctgcaggaaagagactgagacaggaagagtgaactca
aggccactctaggctacagattaggctctagaccagtttgagtgacatag
gaagactgtctttaaagaacaagaactagccatgtaagccagtggtagag
tacatgcctagcagaccacagaaaggaagaaaaatgaagcaataacgtta
aatatatattcgttatatctggtgctggctcactttttggggtgtgtcat
cttggcacattttttggatgtgtcattttggaagagcggcgactctcaac
tgagacaggaccccaccagatttgcctatgggaaagcttcggctgcatct
cttgatatgtggttgattggaaaggacccagcccattgtgggttggtgca
tccatgggcctggtgtcttggtgctttaagaagctaaggcaaggtgatga
ggaagcagcagttagcagcattcccttccatgggctctgcatcagatctg
ctctcagtgtcctgccctgtttctggagagaa
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaagccagc
gtactgttcaacctcccggcagtcggtttcaaggtccgccctatgcggag
cccccgccctgcgtagtgcgtcagcaatgcacagagagatgcgcagagag
gcaatgcgcagagagatgcgcagagagatgcgcagagaggcaatgcgcag
agagatgcgcagagaggcaatgcgcagagagatgcgcagagaggcaatgc
gcagagagatgcgcagagaggcaatgcgcagagagatgcgcagagaggca
gtgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccagtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
acttgccgagtcggtccgtaaatacggaaccaatgctaattttaccttgg
tgcagttagacaggctcgccggcatggcactaactcctgctgactggcaa
acgattgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agcgctttggcacgaagctgcacaagcgcaggcccgagcaaactcagctg
ctttgactccagagcagagagattggacttttgacttgttgacgggtcag
ggagcttattctgctgatcagacaaactaccattggggagcttatgccca
gatttcttccacggctattagggcctggaaggcgctctcccgagcaggtg
aaaccactgggcagtttaacaaagataatccagggacctcaggaatcctt
ctcagaattttgtggccagaatgacagaggcagcagagcgtattgttgga
aagtcagagcaagctggcgccttctgatagaacagcctcatctatgaagt
aggcacaaaggagtggccgagcggccatagccccaagaaagaacaaaggc
ttacaagactggcctcagggcctgtccgagagctgggggacctctctagc
aagtgcaggttaagccgggctggcatctccatccctaaaccgctcccatg
gggcgaaaaatatacgaaggacaatggttttaaccgtgcgggagaaagcc
cct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88643326_88644509
seq2: B6Ng01-016P08.b_44_1225

seq1  GAATTCAGGTTTCCATGCTTGTTCAGCAAGGGCTCTTACTCCCTTAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTCCATGCTTGTTCAGCAAGGGCTCTTACTCCCTTAGCAA  50

seq1  GCTCTGGCTGTCGTTGTTACAGAAATTGACATACTGATTCTAAAACTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCTGTCGTTGTTACAGAAATTGACATACTGATTCTAAAACTTCA  100

seq1  GTGAAATCTGAAAAGACTCATGAATGAGCAAACTTGGAAGATCTATGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTGAAAAGACTCATGAATGAGCAAACTTGGAAGATCTATGTCG  150

seq1  TCGGGGCTCAAGTCTCACAACAGTATTAACATAAGGGCACACAGAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGCTCAAGTCTCACAACAGTATTAACATAAGGGCACACAGAAGGAT  200

seq1  TAGCCCCGAGGGATAGACCACGTAGGAGCAGGTGGCTACATACAGAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCGAGGGATAGACCACGTAGGAGCAGGTGGCTACATACAGAACCA  250

seq1  CAGAACCACAACTGGTTTAGACGATGCTTCAAAGGTAACTCAACTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCACAACTGGTTTAGACGATGCTTCAAAGGTAACTCAACTGAGAA  300

seq1  AAATCATGAACTTTTGCCCATACCCTATGGCACTGAAAAGCTAGCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGAACTTTTGCCCATACCCTATGGCACTGAAAAGCTAGCTCAAA  350

seq1  TGAAGCCTATGTCTATATATGGAAGCTAAAACTATAAAGCTTCAAGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCTATGTCTATATATGGAAGCTAAAACTATAAAGCTTCAAGAATA  400

seq1  AAACAGGGAAATAGGCTGTTGGAATTTGCTAGGATTTCTTAAAACACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGAAATAGGCTGTTGGAATTTGCTAGGATTTCTTAAAACACAAA  450

seq1  AGTCACTAATGGGGAAAAAAACAAACTGCACCTCATGAAAATTTAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAATGGGGAAAAAAACAAACTGCACCTCATGAAAATTTAAAACT  500

seq1  TTTGGTTTTCGCGATGCATGATTAAGAAACTGAAAAGACAAGCCACCGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTCGCGATGCATGATTAAGAAACTGAAAAGACAAGCCACCGAC  550

seq1  TAGAAGTTATTTTCAATACCTACGTCTGATAAATGATTCATACTGTACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTATTTTCAATACCTACGTCTGATAAATGATTCATACTGTACGA  600

seq1  TATATAAAGCCTTCTAAAACATGAAAAAAATAAACCAAACATGGTGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGCCTTCTAAAACATGAAAAAAATAAACCAAACATGGTGACTC  650

seq1  ACTTCTGCAGTTCCTGCAGGAAAGAGACTGAGACAGGAAGAGTGAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCAGTTCCTGCAGGAAAGAGACTGAGACAGGAAGAGTGAACTCA  700

seq1  AGGCCACTCTAGGCTACAGATTAGGCTCTAGACCAGTTTGAGTGACATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTCTAGGCTACAGATTAGGCTCTAGACCAGTTTGAGTGACATAG  750

seq1  GAAGACTGTCTTTAAAGAACAAGAACTAGCCATGTAAGCCAGTGGTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGTCTTTAAAGAACAAGAACTAGCCATGTAAGCCAGTGGTAGAG  800

seq1  TACATGCCTAGCAGACCACAGAAAGGAAGAAAAATGAAGCAATAACGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCTAGCAGACCACAGAAAGGAAGAAAAATGAAGCAATAACGTTA  850

seq1  AATATATATTCGTTATATCTGGTGCTGGCTCACTTTTTGGGGTGTGTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTCGTTATATCTGGTGCTGGCTCACTTTTTGGGGTGTGTCAT  900

seq1  CTTGGCACATTTTTTGGATGTGTCATTTTGGAAGAGCGGCGACTCTCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCACATTTTTTGGATGTGTCATTTTGGAAGAGCGGCGACTCTCAAC  950

seq1  TGAGACAAGGACCCCACCAGATTTGCCTATGGGAAAGCTTCGGCTGCATC  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAC-AGGACCCCACCAGATTTGCCTATGGGAAAGCTTCGGCTGCATC  999

seq1  TTCTTGATATGTGGTTGATTTGAAAGGACCCAGCCCATTGTGGG-TGGTG  1049
       ||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  -TCTTGATATGTGGTTGATTGGAAAGGACCCAGCCCATTGTGGGTTGGTG  1048

seq1  CCATCCATGGG-CTGGTGGTCCTGGGTGCTATAAGAAGGCTAAG--CAGG  1096
       |||||||||| ||||||   || |||||| |||||| ||||||   |||
seq2  -CATCCATGGGCCTGGTG--TCTTGGTGCTTTAAGAA-GCTAAGGCAAGG  1094

seq1  TGATGAGG-AGCAAGGCAGTAAGCAGCAT--CCCTCCATGGCCTCTGCAT  1143
      |||||||| ||||  ||||| ||||||||  || ||||||| ||||||||
seq2  TGATGAGGAAGCA--GCAGTTAGCAGCATTCCCTTCCATGGGCTCTGCAT  1142

seq1  CAGTTCCTGCCTCCAGGTTCCTGCCCTGTTTCCTGAGAGAA  1184
      ||| | ||||   |||  ||||||||||||||  |||||||
seq2  CAGAT-CTGCTCTCAGTGTCCTGCCCTGTTTCTGGAGAGAA  1182