BAC Information

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BAC

Clone NameB6Ng01-018G11
Chromosome11 (Build37)
Map Location 89,469,982 - 89,587,959
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018G11.bB6Ng01-018G11.g
ACCDH851816DH851817
length851970
definitionDH851816|Mus musculus domesticus DNA, BAC clone: B6Ng01-018G11, 5' end.DH851817|Mus musculus domesticus DNA, BAC clone: B6Ng01-018G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,469,982 - 89,470,827)(89,586,988 - 89,587,959)
sequence
gaattccatggtgctatcttagacggctgttcaccttgaaaggttatgaa
tttgtaacacataggatacaaatgttccctctggggctctaactgtttta
ggatccctggtaaagagaaatgggtttctctggaggtggggcgggttagg
ggatgtagcaactcccaaggcattatagagacaatgtagcccaagagaac
gcaagagtgtttcaattcatgctcacatgctgttggcagaatgtattcta
ggtggttctgttatatggtagtttttcattatactcaaaacaaggcaatt
gcttcctatacctgcttgtggtatacagacaagctatctcaaaagctgat
atctgcatggaaagggaaacagtagacctttgaggggggacacgggaaac
ccctggtttctagtttgcactctgtgcaggggttactgcttgctccactc
aagtgccaagtagagcaattggaaaacaaacagaagatagagggagtcta
ggctaggcaacagatagcatccattgtatgttgatcaaggaaatgaaatg
ctcaaacagcttgctcattcaggaagggtcctcttttgtgaagaaaacta
gaaagacaggtgaggttatttggagcctagctatttccctggagacgtct
aaaaagaagagagccagggcaatttacacacagcccctcttctttacata
gtgaggttggcagggtctgtgagagattcatcaactgtctcaaactattt
tcttttttagcattatgggtttggcaaaatcccagatatcctttatcaag
tgttttcttgctgcccctgcctcatttttaattcccatgtgtatttcgat
t
gaattctatacctgagatgcctctgaaagatgccattatccgaatgaatg
gcatcctctttagctgggttgctcaagtattccttgcaagggggcttctg
ctatagcatgagtaattaagactccaccaggagtggtataccaaatggaa
tgcactcataggaagactgccaggaaagaaagcaccagaggcagaaagag
acgtacagagatgggacgatgggaacgttagaggttgacaggaaatgctt
ttaggagtatttcaaatgaaatgcttacaagaagatgctaagtcttagtt
cccacagcccagggactaaaggggccacttatggtggttatttgaaatgc
attagcaatcagcacagtactgagcaaggatatttcagaagagtactagt
ggtgggcctgcacagagcctctgagggtctcctcactctacttggcatta
gctattagcctgtgactattgagtcatccaggatccctgggaagatgctg
gactagtggaagaggagagtctaggagagaggaattaggcagtggctgtc
taatgatgctacagaagtgctttaatggctgacccacaccaggtggtgtc
cactagctgaagagcaggagtggccattgaacagttttggtttttcctgc
tgattggcacagaaggaatctacacaaaaattggccgttccgagcactgg
ctctctgagaactggacagttttcagaaataataccagcatagcatagtt
atggagaaatcaatttttaatgaaatataattgccatacaaggtttgaac
ctttcgagatagtaggaaatgatgctgacgtatggttcctttgggtctta
aaagtctgtgaccactgggtctgattttatttcagatagttgaagaacca
aaggccagtgtagaaacagagctctggtctgcagtgtgttgtgtgtgtgt
gtgtgtgtgtgtgtggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89469982_89470827
seq2: B6Ng01-018G11.b_42_892

seq1  GAATTCCATGGTGCTATCTTAGACGGCTGTTCACCTTGAAAGGTTATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTGCTATCTTAGACGGCTGTTCACCTTGAAAGGTTATGAA  50

seq1  TTTGTAACACATAGGATACAAATGTTCCCTCTGGGGCTCTAACTGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACACATAGGATACAAATGTTCCCTCTGGGGCTCTAACTGTTTTA  100

seq1  GGATCCCTGGTAAAGAGAAATGGGTTTCTCTGGAGGTGGGGCGGGTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCTGGTAAAGAGAAATGGGTTTCTCTGGAGGTGGGGCGGGTTAGG  150

seq1  GGATGTAGCAACTCCCAAGGCATTATAGAGACAATGTAGCCCAAGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGCAACTCCCAAGGCATTATAGAGACAATGTAGCCCAAGAGAAC  200

seq1  GCAAGAGTGTTTCAATTCATGCTCACATGCTGTTGGCAGAATGTATTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTGTTTCAATTCATGCTCACATGCTGTTGGCAGAATGTATTCTA  250

seq1  GGTGGTTCTGTTATATGGTAGTTTTTCATTATACTCAAAACAAGGCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTCTGTTATATGGTAGTTTTTCATTATACTCAAAACAAGGCAATT  300

seq1  GCTTCCTATACCTGCTTGTGGTATACAGACAAGCTATCTCAAAAGCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTATACCTGCTTGTGGTATACAGACAAGCTATCTCAAAAGCTGAT  350

seq1  ATCTGCATGGAAAGGGAAACAGTAGACCTTTGAGGGGGGACACGGGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGGAAAGGGAAACAGTAGACCTTTGAGGGGGGACACGGGAAAC  400

seq1  CCCTGGTTTCTAGTTTGCACTCTGTGCAGGGGTTACTGCTTGCTCCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTCTAGTTTGCACTCTGTGCAGGGGTTACTGCTTGCTCCACTC  450

seq1  AAGTGCCAAGTAGAGCAATTGGAAAACAAACAGAAGATAGAGGGAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAAGTAGAGCAATTGGAAAACAAACAGAAGATAGAGGGAGTCTA  500

seq1  GGCTAGGCAACAGATAGCATCCATTGTATGTTGATCAAGGAAATGAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGCAACAGATAGCATCCATTGTATGTTGATCAAGGAAATGAAATG  550

seq1  CTCAAACAGCTTGCTCATTCAGGAAGGGTCCTCTTTTGTGAAGAAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAGCTTGCTCATTCAGGAAGGGTCCTCTTTTGTGAAGAAAACTA  600

seq1  GAAAGACAGGTGAGGTTATTTGGAGCCTAGCTA-TTCCCTGGAGACGTCT  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAAGACAGGTGAGGTTATTTGGAGCCTAGCTATTTCCCTGGAGACGTCT  650

seq1  AAAAAGAAGAGAGCCAGGGCAA-TTACACACAGCCCCTCTTCTTTACATA  698
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAAGAAGAGAGCCAGGGCAATTTACACACAGCCCCTCTTCTTTACATA  700

seq1  GTGAGGTTGGCAGGGTCTGTGAGAGATTCATCAACTGTCTCAAACTATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTGGCAGGGTCTGTGAGAGATTCATCAACTGTCTCAAACTATTT  750

seq1  --CTTTTTAGCATTATGGGTTTGGCAAAATCCCAGATATCCTTTATCAAG  796
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAGCATTATGGGTTTGGCAAAATCCCAGATATCCTTTATCAAG  800

seq1  TGTTTTC-TGCTGCCCCTGCCTCATTTTTAATTCCCATGTGTATTTCGAA  845
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTTTTCTTGCTGCCCCTGCCTCATTTTTAATTCCCATGTGTATTTCGAT  850

seq1  T  846
      |
seq2  T  851

seq1: chr11_89586988_89587959
seq2: B6Ng01-018G11.g_68_1037 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACTGCAGACCAGA  50
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  CACAC-CACACACACACACACACACACACACA-ACACACTGCAGACCAGA  48

seq1  GCTCTGTTTCTACACTGGCCTTTGGTTTCTTCAACTATCTGAAATAATAT  100
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  GCTCTGTTTCTACACTGGCCTTTGG-TTCTTCAACTATCTGAAATAAAAT  97

seq1  CAGACCCAGTGGTCACAGACTTTTAAGACCCAAAGGAACCATACGTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGTGGTCACAGACTTTTAAGACCCAAAGGAACCATACGTCAGC  147

seq1  ATCATTTCCTACTATCTCGAAAGGTTCAAACCTTGTATGGCAATTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCCTACTATCTCGAAAGGTTCAAACCTTGTATGGCAATTATATT  197

seq1  TCATTAAAAATTGATTTCTCCATAACTATGCTATGCTGGTATTATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAAATTGATTTCTCCATAACTATGCTATGCTGGTATTATTTCTG  247

seq1  AAAACTGTCCAGTTCTCAGAGAGCCAGTGCTCGGAACGGCCAATTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTCCAGTTCTCAGAGAGCCAGTGCTCGGAACGGCCAATTTTTGT  297

seq1  GTAGATTCCTTCTGTGCCAATCAGCAGGAAAAACC-AAACTGTTCAATGG  349
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTAGATTCCTTCTGTGCCAATCAGCAGGAAAAACCAAAACTGTTCAATGG  347

seq1  CCACTCCTGCTCTTCAGCTAGTGGACACCACCTGGTGTGGGTCAGCCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTGCTCTTCAGCTAGTGGACACCACCTGGTGTGGGTCAGCCATT  397

seq1  AAAGCACTTCTGTAGCATCATTAGACAGCCACTGCCTAATTCCTCTCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTCTGTAGCATCATTAGACAGCCACTGCCTAATTCCTCTCTCC  447

seq1  TAGACTCTCCTCTTCCACTAGTCCAGCATCTTCCCAGGGATCCTGGATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTCCTCTTCCACTAGTCCAGCATCTTCCCAGGGATCCTGGATGA  497

seq1  CTCAATAGTCACAGGCTAATAGCTAATGCCAAGTAGAGTGAGGAGACCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAGTCACAGGCTAATAGCTAATGCCAAGTAGAGTGAGGAGACCCT  547

seq1  CAGAGGCTCTGTGCAGGCCCACCACTAGTACTCTTCTGAAATATCCTTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTCTGTGCAGGCCCACCACTAGTACTCTTCTGAAATATCCTTGC  597

seq1  TCAGTACTGTGCTGATTGCTAATGCATTTCAAATAACCACCATAAGTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTGTGCTGATTGCTAATGCATTTCAAATAACCACCATAAGTGGC  647

seq1  CCCTTTAGTCCCTGGGCTGTGGGAACTAAGACTTAGCATCTTCTTGTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGTCCCTGGGCTGTGGGAACTAAGACTTAGCATCTTCTTGTAAG  697

seq1  CATTTCATTTGAAATACTCCTAAAAGCATTTCCTGTCAACCTCTAACGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATTTGAAATACTCCTAAAAGCATTTCCTGTCAACCTCTAACGTT  747

seq1  CCCATCGTCCCATCTCTGTACGTCTCTTTCTGCCTCTGGTGCTTTCTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCGTCCCATCTCTGTACGTCTCTTTCTGCCTCTGGTGCTTTCTTTC  797

seq1  CTGGCAGTCTTCCTATGAGTGCATTCCATTTGGTATACCACTCCTGGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGTCTTCCTATGAGTGCATTCCATTTGGTATACCACTCCTGGTGG  847

seq1  AGTCTTAATTACTCATGCTATAGCAGAAGCCCCCTTGCAAGGAATACTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAATTACTCATGCTATAGCAGAAGCCCCCTTGCAAGGAATACTTG  897

seq1  AGCAACCCAGCTAAAGAGGATGCCATTCATTCGGATAATGGCATCTTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCCAGCTAAAGAGGATGCCATTCATTCGGATAATGGCATCTTTCA  947

seq1  GAGGCATCTCAGGTATAGAATTC  972
      |||||||||||||||||||||||
seq2  GAGGCATCTCAGGTATAGAATTC  970