BAC Information

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BAC

Clone NameB6Ng01-019F10
Chromosome11 (Build37)
Map Location 109,159,510 - 109,302,229
singlet/doubletdoublet
Overlap gene1700096J18Rik, Gna13, 9930022D16Rik, X83328
Upstream genePrkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9
Downstream geneSlc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019F10.bB6Ng01-019F10.g
ACCDH852458DH852459
length1,0891,067
definitionDH852458|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F10, 5' end.DH852459|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,301,126 - 109,302,229)(109,159,510 - 109,160,594)
sequence
gaattctccctgcactctaaagcagaggccctcctgagctacattcagct
tgcgcatcaggaagacctgcatgacatggtccccagctcagcatttctct
actgatgcctcagtcttaagggtcctccttcccaggtagactctagagca
gtatgaatcccaagctgtgatgtgcatcacagtaccacagtcacacgggg
ctgccagctagagttgagatagcggatggtatgatgtttttgaagatttg
gtaagaaaaacgaataaaaaactctattcgtaccgtgattccgtgttgag
atggcgttttggtggcactcaacacctaatgttactgaaatgaattccag
cagaggggctactggacagttaaaattgcacgcgtggcttgtggtacttt
tctattggacagaattgctccagataaaagaatacaagttagattgggga
ccagaggagtgtgaacccacgaatttttatgcaagagttacacacccccc
aacacgatatttgaggggtttttggcagaagagcgttgcaagttctctaa
agtagaactgattccacccacggttcaggtgccttctagcccggccttgg
tgagagtcggggtggccgggatctccccgcagtggggtgcatcaggctgt
ggtggtttacctgagtttccgacgccccgcaggccaagctgccaatttcg
ctctcctcccaggggcggccacaggtgttgcccgccaccgccaccagcgg
aggcggatccgcgcgagggacggacttggggcgcagctggggacagcgac
gtgcttcctgcctgggaagggcccgttcgccggcaatagcagtcccgcgg
gctgcctgcttggattttatcactagagctttggagaggaaacaaccgac
aacccaggcccgctgtcctcgagggatttgagatgagtcacagccccacg
tcaggaaatgctgctttccaaagaagcgctgtgtcccaagcttcaggaga
ggcgccagcggcagaggatgctaatcagccagtctggactacatgggaga
cctggtcccaaagaaccagtaggatgagataatggatac
cgccaaccaatcagcgagcagcgccgcgcgctcattagcatgcactgcgc
gggctcccacctgccaccagggggcggcgtccggctccacctggaccaaa
cctcaggtaggaaggccagatcagggatgctgaagctagagcatctgccc
caaggtgtgtgagcctgttaatctctttatatacagaagtgagacagagc
acagtgggaaaggagctttccgacgccagcttgcaggagagttggacatc
tttgggtaagtcagcgctaagaatttctttataagagaagagaaaatttt
aaacagtttcatggtatccaatagaagtgtccatgaagcttctaatagat
aagtgagcaacgctgtgattgttcctagatagatatttaagataaaaaaa
aataccagatgtagacttttattaattggcctaacaaatagactaactag
taagatgttggtttcaagagaggaagaagtgaagaagcccatagacactc
tttagctaactgtgtgcccttaggcaaattatattttacttctaattccc
gatacttgtatttgtttgtctttaatagactcttaaaggaacttttaaac
tgacctaaaaattgggcagatgggacagaatagatgcctccagagtggcc
acctgctccacacattcataacccccctccagggtcaacctgtctgggga
gattggtatgtgtcaccaattgatgagcctatattggcatatatccagaa
aaaaaaaaaaaaggatgaagcctccacttagtctacacaagcaggataga
tatacaatgtcgcatctcgcatgttaagttgaaaaagaacaaagggattc
gccttagtggtgctcagtcaactggtatacctttagcatctaagccctta
tccacttatttttttcctttcaggcacatttattgtaagatcggtgaacg
tgtggacacttctcaaagctgctcacacatgttcattaacactgactcag
tttgcaaacaatgtaagtgctcttttcctgggcccatgcagaagctccca
ctctcaacttcagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_109301126_109302229
seq2: B6Ng01-019F10.b_47_1135 (reverse)

seq1  GTATCCCATTATCTCATCCCTACTGGTTCTTTGGGACCAGTTCTCCCAAT  50
      |||| |||||||||||| |||||||||||||||||||||| |||||| ||
seq2  GTAT-CCATTATCTCAT-CCTACTGGTTCTTTGGGACCAGGTCTCCC-AT  47

seq1  GTAGCTCAGACTGGCCTTGATCTGGCATCCTTCTGCCCGCTGGGCGCCTC  100
      ||||  |||||||||  |||| | |||||| |||| ||||| ||||||||
seq2  GTAGTCCAGACTGGC--TGAT-TAGCATCC-TCTG-CCGCT-GGCGCCTC  91

seq1  TCCTG-AGCTTGGGATCACAAGCGCTTGCTTTTGGAAAGCATGCATTTCT  149
      ||||| ||||||||| ||| |||||||   ||||||||||| ||||||| 
seq2  TCCTGAAGCTTGGGA-CAC-AGCGCTT--CTTTGGAAAGCA-GCATTTC-  135

seq1  CTGACGTGGGGCTGTGACTCATCTCAAATCCCTCGAGGAACAGCGGGCCT  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGACGTGGGGCTGTGACTCATCTCAAATCCCTCGAGG-ACAGCGGGCCT  184

seq1  GGGTTGTCGGTTGTTTCCTCTCCAAAGCTCTAGTGATAAAAATCCAAGCA  249
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGTTGTCGGTTGTTTCCTCTCCAAAGCTCTAGTGAT-AAAATCCAAGCA  233

seq1  GGCAG-CCGCGGGACTGCTATTGCCGGCGAACGGGCCCTTCCCAGGCAGG  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCGCGGGACTGCTATTGCCGGCGAACGGGCCCTTCCCAGGCAGG  283

seq1  AAGCACGTCGCTGTCCCCAGCTGCGCCCCAAGTCCGTCCCTCGCGCGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGTCGCTGTCCCCAGCTGCGCCCCAAGTCCGTCCCTCGCGCGGAT  333

seq1  CCGCCTCCGCTGGTGGCGGTGGCGGGCAACACCTGTGGCCGCCCCTGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCCGCTGGTGGCGGTGGCGGGCAACACCTGTGGCCGCCCCTGGGA  383

seq1  GGAGAGCGAAATTGGCAGCTTGGCCTGCGGGGCGTCGGAAACTCAGGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCGAAATTGGCAGCTTGGCCTGCGGGGCGTCGGAAACTCAGGTAA  433

seq1  ACCACCACAGCCTGATGCACCCCACTGCGGGGAGATCCCGGCCACCCCGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACAGCCTGATGCACCCCACTGCGGGGAGATCCCGGCCACCCCGA  483

seq1  CTCTCACCAAGGCCGGGCTAGAAGGCACCTGAACCGTGGGTGGAATCAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCAAGGCCGGGCTAGAAGGCACCTGAACCGTGGGTGGAATCAGT  533

seq1  TCTACTTTAGAGAACTTGCAACGCTCTTCTGCCAAAAACCCCTCAAATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTAGAGAACTTGCAACGCTCTTCTGCCAAAAACCCCTCAAATAT  583

seq1  CGTGTTGGGGGGTGTGTAACTCTTGCATAAAAATTCGTGGGTTCACACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTGGGGGGTGTGTAACTCTTGCATAAAAATTCGTGGGTTCACACTC  633

seq1  CTCTGGTCCCCAATCTAACTTGTATTCTTTTATCTGGAGCAATTCTGTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCCCCAATCTAACTTGTATTCTTTTATCTGGAGCAATTCTGTCC  683

seq1  AATAGAAAAGTACCACAAGCCACGCGTGCAATTTTAACTGTCCAGTAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGTACCACAAGCCACGCGTGCAATTTTAACTGTCCAGTAGCC  733

seq1  CCTCTGCTGGAATTCATTTCAGTAACATTAGGTGTTGAGTGCCACCAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTGGAATTCATTTCAGTAACATTAGGTGTTGAGTGCCACCAAAA  783

seq1  CGCCATCTCAACACGGAATCACGGTACGAATAGAGTTTTTTATTCGTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATCTCAACACGGAATCACGGTACGAATAGAGTTTTTTATTCGTTTT  833

seq1  TCTTACCAAATCTTCAAAAACATCATACCATCCGCTATCTCAACTCTAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAAATCTTCAAAAACATCATACCATCCGCTATCTCAACTCTAGC  883

seq1  TGGCAGCCCCGTGTGACTGTGGTACTGTGATGCACATCACAGCTTGGGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCCCGTGTGACTGTGGTACTGTGATGCACATCACAGCTTGGGAT  933

seq1  TCATACTGCTCTAGAGTCTACCTGGGAAGGAGGACCCTTAAGACTGAGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTGCTCTAGAGTCTACCTGGGAAGGAGGACCCTTAAGACTGAGGC  983

seq1  ATCAGTAGAGAAATGCTGAGCTGGGGACCATGTCATGCAGGTCTTCCTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAGAGAAATGCTGAGCTGGGGACCATGTCATGCAGGTCTTCCTGA  1033

seq1  TGCGCAAGCTGAATGTAGCTCAGGAGGGCCTCTGCTTTAGAGTGCAGGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAAGCTGAATGTAGCTCAGGAGGGCCTCTGCTTTAGAGTGCAGGGA  1083

seq1  GAATTC  1104
      ||||||
seq2  GAATTC  1089

seq1: chr11_109159510_109160594
seq2: B6Ng01-019F10.g_76_1142

seq1  CGCCAACCAATCAGCGAGCAGCGCCGCGCGCTCATTAGCATGCACTGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAACCAATCAGCGAGCAGCGCCGCGCGCTCATTAGCATGCACTGCGC  50

seq1  GGGCTCCCACCTGCCACCAGGGGGCGGCGTCCGGCTCCACCTGGACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCACCTGCCACCAGGGGGCGGCGTCCGGCTCCACCTGGACCAAA  100

seq1  CCTCAGGTAGGAAGGCCAGATCAGGGATGCTGAAGCTAGAGCATCTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTAGGAAGGCCAGATCAGGGATGCTGAAGCTAGAGCATCTGCCC  150

seq1  CAAGGTGTGTGAGCCTGTTAATCTCTTTATATACAGAAGTGAGACAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGTGTGAGCCTGTTAATCTCTTTATATACAGAAGTGAGACAGAGC  200

seq1  ACAGTGGGAAAGGAGCTTTCCGACGCCAGCTTGCAGGAGAGTTGGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGAAAGGAGCTTTCCGACGCCAGCTTGCAGGAGAGTTGGACATC  250

seq1  TTTGGGTAAGTCAGCGCTAAGAATTTCTTTATAAGAGAAGAGAAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTAAGTCAGCGCTAAGAATTTCTTTATAAGAGAAGAGAAAATTTT  300

seq1  AAACAGTTTCATGGTATCCAATAGAAGTGTCCATGAAGCTTCTAATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTCATGGTATCCAATAGAAGTGTCCATGAAGCTTCTAATAGAT  350

seq1  AAGTGAGCAACGCTGTGATTGTTCCTAGATAGATATTTAAGATAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGCAACGCTGTGATTGTTCCTAGATAGATATTTAAGATAAAAAAA  400

seq1  AATACCAGATGTAGACTTTTATTAATTGGCCTAACAAATAGACTAACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGATGTAGACTTTTATTAATTGGCCTAACAAATAGACTAACTAG  450

seq1  TAAGATGTTGGTTTCAAGAGAGGAAGAAGTGAAGAAGCCCATAGACACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTTGGTTTCAAGAGAGGAAGAAGTGAAGAAGCCCATAGACACTC  500

seq1  TTTAGCTAACTGTGTGCCCTTAGGCAAATTATATTTTACTTCTAATTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTAACTGTGTGCCCTTAGGCAAATTATATTTTACTTCTAATTCCC  550

seq1  GATACTTGTATTTGTTTGTCTTTAATAGACTCTTAAAGGAACTTTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTGTATTTGTTTGTCTTTAATAGACTCTTAAAGGAACTTTTAAAC  600

seq1  TGACCTAAAAATTGGGCAGATGGGACAGAATAGATGCCTCCAGAGTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAAAATTGGGCAGATGGGACAGAATAGATGCCTCCAGAGTGGCC  650

seq1  ACCTGCTCCACACATTCATAACCCCCCTCCAGGGTCAACCTGTCTGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCCACACATTCATAACCCCCCTCCAGGGTCAACCTGTCTGGGGA  700

seq1  GATTGGTATGTGTCACCAATTGATGAGCCTATATTGGCATATATCCAG-A  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATTGGTATGTGTCACCAATTGATGAGCCTATATTGGCATATATCCAGAA  750

seq1  AAAAAAAAAAAAGGATGAAGCCTCCACTTAGTCTACACAAGCAGGATAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGGATGAAGCCTCCACTTAGTCTACACAAGCAGGATAGA  800

seq1  TATACAATGTCGCATCTCGCATGTTTAAGTTGAAAAAGAACAAAGGGATT  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATACAATGTCGCATCTCGCATG-TTAAGTTGAAAAAGAACAAAGGGATT  849

seq1  CGCCTTAGTGGTGCTCAGTCAACTGGTATACCTTTAGCATCTAAGCCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTAGTGGTGCTCAGTCAACTGGTATACCTTTAGCATCTAAGCCCTT  899

seq1  ATCCACTATTTTTTTTTCCTTTCAGGCACATTTATTTGTAAGAATCCGTT  949
      ||||||| | |||||||||||||||||||||||| ||||||||   || |
seq2  ATCCACT-TATTTTTTTCCTTTCAGGCACATTTA-TTGTAAGA--TCGGT  945

seq1  GAACGCTGTGGACACTCTCAGAAAGCATGCTCACACACATGTTCACATAA  999
      ||||| |||||||||| ||  ||||| ||||  ||||||||||||  |||
seq2  GAACG-TGTGGACACT-TCTCAAAGC-TGCT--CACACATGTTCA-TTAA  989

seq1  CACTGACTCCAGTTTGCAAACAATGTCAAAGTGCTCGTTTCCCCTGGGCC  1049
      |||||||| |||||||||||||||||  |||||||| |||  |||||| |
seq2  CACTGACT-CAGTTTGCAAACAATGT--AAGTGCTCTTTT--CCTGGG-C  1033

seq1  CCATGCAGAAGCCCCCACATCACAAACTTCAGTGAA  1085
      |||||||||||| ||||| || | ||||||||||||
seq2  CCATGCAGAAGCTCCCAC-TCTC-AACTTCAGTGAA  1067