BAC Information

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BAC

Clone NameB6Ng01-019F17
Chromosome11 (Build37)
Map Location 49,998,359 - 50,060,815
singlet/doubletdoublet
Overlap gene3010026O09Rik, Sqstm1, Mgat4b, Ltc4s
Upstream geneBtnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b
Downstream geneMaml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019F17.bB6Ng01-019F17.g
ACCDH852468DH852469
length836353
definitionDH852468|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F17, 5' end.DH852469|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,998,359 - 49,999,189)(50,060,463 - 50,060,815)
sequence
gaattctgggacagcctttctcgacatccacggtctgccttccctctaat
agaacagtaggtcaaaagggttgaagaaattctagctgtgctaggccaca
gggactgtttgtttgtttgtacagagcatgccctggttagcctgtaactc
acagagatccgcctctgcagctatggtgtacagtaaaaggttagaacaac
atgccagccttaaggcatgtgtttactgtaggcaaagttcatactcttgt
ttgtaagagtcacagaaagtaaacacagtctgtgactctacaggaaacaa
gtaaactcaaaggtacactttggtcttaagatttttgttcgtggggtctg
gagaggtggctcagtggttaagagcactgactgctcttccgaaggtcctg
agttcaaatcccagcaaccacatggtggctcacaaccatccataataaga
tctgatgccctctctggggtgtctgaagacagctacagtgtactcacata
catgaaatagataaatcttaaaaaaaaataaaagagatttttgttcattt
gttttgctttgttgttattgttgttgtttaggtctggtttgggttttttg
tttgttttgttttttgtttttgtttttgagacaggctatcactatatggc
cctaggtagctttgaaattcaccaagtagaccaggctagtttcaagctca
tgggagttttacatgcatattgagattagaaacataggcccatcacacct
tgtaacatcctagtttgaaatttctataaaattgaatgttgtatttatac
aagccaatatccagcgagtttttcttattatctcta
aatctgtagaccaggctggtctcaaactcagagagatccacctgcctctg
cctcctgagtgttgggatttaaaatgtgcgccaccaccagctgtgatttt
cagcattttgtgtgtctgtgtctgtacactatttgagtgcttgttgccta
aggaggtggtgagcctccaggctgattcagggaattgagttcaggccttt
cacaagaacaagtgcccttaaccactgagccaactctctagcccctcccc
tccccttccctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctctctctctctctctctctctctctctctctctc
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49998359_49999189
seq2: B6Ng01-019F17.b_48_883

seq1  GAATTCTGGGACAGCCTTTCTCGACATCCACGGTCTGCCTTCCCTCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGACAGCCTTTCTCGACATCCACGGTCTGCCTTCCCTCTAAT  50

seq1  AGAACAGTAGGTCAAAAGGGTTGAAGAAATTCTAGCTGTGCTAGGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTAGGTCAAAAGGGTTGAAGAAATTCTAGCTGTGCTAGGCCACA  100

seq1  GGGACTGTTTGTTTGTTTGTACAGAGCATGCCCTGGTTAGCCTGTAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTTTGTTTGTTTGTACAGAGCATGCCCTGGTTAGCCTGTAACTC  150

seq1  ACAGAGATCCGCCTCTGCAGCTATGGTGTACAGTAAAAGGTTAGAACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCCGCCTCTGCAGCTATGGTGTACAGTAAAAGGTTAGAACAAC  200

seq1  ATGCCAGCCTTAAGGCATGTGTTTACTGTAGGCAAAGTTCATACTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCCTTAAGGCATGTGTTTACTGTAGGCAAAGTTCATACTCTTGT  250

seq1  TTGTAAGAGTCACAGAAAGTAAACACAGTCTGTGACTCTACAGGAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAGTCACAGAAAGTAAACACAGTCTGTGACTCTACAGGAAACAA  300

seq1  GTAAACTCAAAGGTACACTTTGGTCTTAAGATTTTTGTTCGTGGGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCAAAGGTACACTTTGGTCTTAAGATTTTTGTTCGTGGGGTCTG  350

seq1  GAGAGGTGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCGAAGGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCGAAGGTCCTG  400

seq1  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATAAGA  450

seq1  TCTGATGCCCTCTCTGGGGTGTCTGAAGACAGCTACAGTGTACTCACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCTCTCTGGGGTGTCTGAAGACAGCTACAGTGTACTCACATA  500

seq1  CATGAAATAGATAAATCTTAAAAAAAAATAAAAGAGATTTTTGTTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATAGATAAATCTTAAAAAAAAATAAAAGAGATTTTTGTTCATTT  550

seq1  GTTTTGCTTTGTTGTTATTGTTGTTGTTTAGGTCTGGTTTGGGTTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTTGTTGTTATTGTTGTTGTTTAGGTCTGGTTTGGGTTTTTTG  600

seq1  TTTGTTTTGTTTTTTGTTTTTGTTTTTGAGACAGGCTATCACTATATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTTGTTTTTGTTTTTGAGACAGGCTATCACTATATGGC  650

seq1  CCTAGGTAGC-TTGAAATTCACCAAGTAGACCAGGCTAGTCTCAAGCTCA  699
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  CCTAGGTAGCTTTGAAATTCACCAAGTAGACCAGGCTAGTTTCAAGCTCA  700

seq1  T-GGAG-TTTACATGCATATTGAGATTAGAAACATAGG-CCAGCACACCT  746
      | |||| ||||||||||||||||||||||||||||||| ||| |||||||
seq2  TGGGAGTTTTACATGCATATTGAGATTAGAAACATAGGCCCATCACACCT  750

seq1  TGTAACATCCTAGTTTGAAATTTCTATAAAATTGAATGTTGTATTTATAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATCCTAGTTTGAAATTTCTATAAAATTGAATGTTGTATTTATAC  800

seq1  AAG-CAATATCCAGCGAG-TTTTCTTAGTTATCTCTA  831
      ||| |||||||||||||| |||||||| |||||||||
seq2  AAGCCAATATCCAGCGAGTTTTTCTTA-TTATCTCTA  836

seq1: chr11_50060463_50060815
seq2: B6Ng01-019F17.g_75_427 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAG  50

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGAAGG  100

seq1  GGAGGGGAGGGGCTAGAGAGTTGGCTCAGTGGTTAAGGGCACTTGTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAGGGGCTAGAGAGTTGGCTCAGTGGTTAAGGGCACTTGTTCTT  150

seq1  GTGAAAGGCCTGAACTCAATTCCCTGAATCAGCCTGGAGGCTCACCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGCCTGAACTCAATTCCCTGAATCAGCCTGGAGGCTCACCACCT  200

seq1  CCTTAGGCAACAAGCACTCAAATAGTGTACAGACACAGACACACAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCAACAAGCACTCAAATAGTGTACAGACACAGACACACAAAATG  250

seq1  CTGAAAATCACAGCTGGTGGTGGCGCACATTTTAAATCCCAACACTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATCACAGCTGGTGGTGGCGCACATTTTAAATCCCAACACTCAGG  300

seq1  AGGCAGAGGCAGGTGGATCTCTCTGAGTTTGAGACCAGCCTGGTCTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGTGGATCTCTCTGAGTTTGAGACCAGCCTGGTCTACAG  350

seq1  ATT  353
      |||
seq2  ATT  353