BAC Information

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BAC

Clone NameB6Ng01-020A05
Chromosome11 (Build37)
Map Location 114,164,131 - 114,165,218
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
Downstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020A05.bB6Ng01-020A05.g
ACCDH852929DH852930
length1,0931,051
definitionDH852929|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A05, 5' end.DH852930|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgagcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagatgag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagctttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttgtagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcggtgaataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtccagaaaggggttgtaatgctgcagctgtc
cacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccaggc
tctagtcttctcttcttggtcagttgatcataagggacaccccatgaggc
tataagcgatgtttggcagcagatggcattgtacaggagtagaatcatag
catttgagcaacttcttcatgtactacttgtgcctaggacctgtcgggcc
gattactgattaacaatctaattgaataaaactgcttgcgtgc
gaattcctctgtggaaagtttcaaggtgggggaactgtggcaatgattag
gccagatgttctggctctggggatcctgggccctcttgaaagattggcat
taatgaaccagtcctttccctggaaaatgatcacctcttggctgtattag
agacagctgttgttatctatgctggtctaaaaagaaatgattagacagaa
tctgaataatgatttagattgattaccctcagataaccctcagtggagac
acgaaaatagtacagaaagccgatgtgttcagaacgtcgttaattactta
gatctgggacctagcgtgtcattagtattctataagtggtgggaggaaag
agagaccccttctcccacgcagtctcaggcctcctccctgttcacactag
aggctggaccccttatggtcaaagtctgagcatccattgaaaacctgggc
aaccgctcggcagtggtggcgcatgcctttaatcccagcacttgggaggc
agaggcaggtggatttctgagttcgaggccagtctggtctacagagtgag
ttccaggacagccagggctatacagagaaaccctgtctcgaaaaacggaa
agaaagaaagaaagaaagaaagaaagaaagacagaaagaaagaaagacag
acagacagacagacagaaagaaagaaagaaagaaagaaaggaaggaagga
aggaaggaaggaaggaaggaaggaagaaaaccagggcaaccaatacaacc
aacatcaaagaggcagaatgtctcacattggcctgtctgctcttctgtgt
aagctccatgtgaggctgggcctgttagaaactggtatcaaataaacctt
gaaagcagactgcagcccttcatagggaacgagcctgaaatcaattgtct
cttcaagaaagctgcccggcacttccgtgaaagtcggtccacctcctgtg
ccagagaccttgttacgtgcactactaccggtgggcgggagacgcatctg
ccaagctgtggtagcaagaatgcagcagcattgagattcatggatgctga
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114164131_114165218
seq2: B6Ng01-020A05.g_67_1117

seq1  GAATTCCTCTGTGGAAAGTTTCAAGGTGGGGGAACTGTGGCAATGATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTGGAAAGTTTCAAGGTGGGGGAACTGTGGCAATGATTAG  50

seq1  GCCAGATGTTCTGGCTCTGGGGATCCTGGGCCCTCTTGAAAGATTGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGTTCTGGCTCTGGGGATCCTGGGCCCTCTTGAAAGATTGGCAT  100

seq1  TAATGAACCAGTCCTTTCCCTGGAAAATGATCACCTCTTGGCTGTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACCAGTCCTTTCCCTGGAAAATGATCACCTCTTGGCTGTATTAG  150

seq1  AGACAGCTGTTGTTATCTATGCTGGTCTAAAAAGAAATGATTAGACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTGTTGTTATCTATGCTGGTCTAAAAAGAAATGATTAGACAGAA  200

seq1  TCTGAATAATGATTTAGATTGATTACCCTCAGATAACCCTCAGTGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAATGATTTAGATTGATTACCCTCAGATAACCCTCAGTGGAGAC  250

seq1  ACGAAAATAGTACAGAAAGCCGATGTGTTCAGAACGTCGTTAATTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAATAGTACAGAAAGCCGATGTGTTCAGAACGTCGTTAATTACTTA  300

seq1  GATCTGGGACCTAGCGTGTCATTAGTATTCTATAAGTGGTGGGAGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGGACCTAGCGTGTCATTAGTATTCTATAAGTGGTGGGAGGAAAG  350

seq1  AGAGACCCCTTCTCCCACGCAGTCTCAGGCCTCCTCCCTGTTCACACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCCTTCTCCCACGCAGTCTCAGGCCTCCTCCCTGTTCACACTAG  400

seq1  AGGCTGGACCCCTTATGGTCAAAGTCTGAGCATCCATTGAAAACCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGACCCCTTATGGTCAAAGTCTGAGCATCCATTGAAAACCTGGGC  450

seq1  AACCGCTCGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCTCGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGC  500

seq1  AGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAGAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAGAGTGAG  550

seq1  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACGGAA  600

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGAAAGAAAGAAAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGAAAGAAAGAAAGACAG  650

seq1  ACAGACAGACAGACAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGA  700

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGAAAACCAGGGCAACCAATACAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGAAAACCAGGGCAACCAATACAACC  750

seq1  AACATCAAAGAGGCAGAATGTCTCACATTGGCCTGTCTGCTCTTCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAAGAGGCAGAATGTCTCACATTGGCCTGTCTGCTCTTCTGTGT  800

seq1  AAGGCTCCATGTGAGGCTGGGCCTGTTAGAAAACTGGTATCAAAATAAAA  850
      || |||||||||||||||||||||||||| ||||||||||||||   |||
seq2  AA-GCTCCATGTGAGGCTGGGCCTGTTAG-AAACTGGTATCAAA--TAAA  846

seq1  CCTTGAAAGCAGAACTGCAGCCCCTTCATAGGGAACGAGCCTTGAAACCC  900
      |||||||||||| ||||||| |||||||||||||||||||| |||||  |
seq2  CCTTGAAAGCAG-ACTGCAG-CCCTTCATAGGGAACGAGCC-TGAAA-TC  892

seq1  AATTGTCTCTTCCAAGAAAAGCTGCCCGGGCACTTCCGTGAAAAGTCGGT  950
      ||||||||||| |||| |||||||||| |||||||||||| |||||||||
seq2  AATTGTCTCTT-CAAG-AAAGCTGCCC-GGCACTTCCGTG-AAAGTCGGT  938

seq1  TCCCACCCCCCTGTGCCAGGAGACCCTGTTACCGTGGCAACTACTAACGG  1000
        ||| || ||||||||| |||||| ||||| ||||   |||||| || |
seq2  --CCA-CCTCCTGTGCCA-GAGACCTTGTTA-CGTG--CACTACT-ACCG  980

seq1  GTGGGCGGGGAGACGGCACTCTGGCCAGAGGCATGTGGGTAAGCCAGAGA  1050
      |||||| ||||||| ||| |||| | ||     |||||   ||| ||| |
seq2  GTGGGC-GGGAGAC-GCA-TCTGCCAAG----CTGTGG--TAGCAAGA-A  1020

seq1  TGCAAGCAGGGCATTGAGGACTCCATGTGGATGCTGAC  1088
      ||| ||||  ||||||| || ||    |||||||||||
seq2  TGC-AGCA--GCATTGA-GATTC---ATGGATGCTGAC  1051