BAC Information

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BAC

Clone NameB6Ng01-020O07
Chromosome7 (Build37)11 (Build37)
Map Location 94,359,370 - 94,359,88593,426,455 - 93,427,317
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneVmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430
Downstream geneLOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O07.bB6Ng01-020O07.g
ACCDH853561DH853562
length855859
definitionDH853561|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O07, 5' end.DH853562|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,359,370 - 94,359,885)(93,426,455 - 93,427,317)
sequence
gaattcttctctacacggccctctaggcagtccctgctatttgcttagaa
ttattagagatgaaaactatctgtcactctggggcaaagcaatatatttt
tttttttttgttaagaattctattgttgagcagaacttaggaaattagtc
tgaacaggttagagggtgcgccagagaaccggacagcttctgggacgggc
ggaagcacagagccgctgaggcagtaccctttgcaggccgcagacagccg
gccaccgtccagaccagaggacaggtgtccgcctggctcgggaggcggcc
tcagcctcaggagcagcggtcgccatcttggttccaggactccctggaac
ttaggaatttagtctgcacaggtgagagtctgcaccacagaagctgacag
cttctgggaactgccaaagcaacacagcttctgagagaggtcctgttttg
ggccttcttcttcgaccaggaggaggtccaaaaacaagatatctgcgcac
ctttcctgtaagagagcttgccagcagagagtgctctgagcactgaaact
cagaggagagaatctgtctcccaggtctgctgagagacggtaacagaatc
accagaagaacaatctctaaacagagtcaactataactactaactccaga
gattaccagatggcgaaaggtaaacgtaggaatcctactaacaggaacca
agaccactcaccatcatcagaacccagcactcccacttcgcctagtccag
ggcaccccaacacacccgaaaacctagacctagatttaaaagcatatctc
atgatgattgtagaggacatcaagaaggacttttattaaatcacttaaag
aaata
gaattcttaagacttgggatccattataatttccctaagtagaagatgag
atgtggggatacagggtggagaggggcatatcagatgaaaggccaatcgc
aacaaagtctcaagctaccaagcgactgtgcttgggaagaggagacttgt
gttcaagtctagaagtcactgtttaacagctaagtcaatatgggtccttt
gtttcttctcttgtttggtatatgcttcaaagcgttctggcctaattctc
agcagggttattgtgtgggtctaaggagggagtttctgaagaaacctcat
aattacaaggccctcgagtatgagctgttttatccatcaagtgcctagaa
ctgcttgaggccaaggctggttccccatgttgactgccatttcccaacac
agtgcttggttcagaaggaatgttgcttcttctctatgggtgaaaaccac
acagtgccttcccaccttgggaacgccccatactgactataggaaggaga
gagacccttgctgccgaccctacccattcactggtcaaccctgttctggt
agaaacagccttctccttggtaaatgacagtagtcccaaggcagagccat
gacatttggggaaagcccttgctgaatgcttgggtctcaatcacaggact
aggatgaaaagacaacacattgtgatcttcccccagagagattaggccca
gtgggtttccaagtaacaccacatagctgtttcgtgctcacaacaggctt
ggaaggatgctgaagtcttaatatagactgccacacgcctctttccaaat
gctgtcagcaaatgctatctcctctcctcttccaggtgtattctgggagc
ctgaacaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_94359370_94359885
seq2: B6Ng01-020O07.b_136_602

seq1  TATTTTTTTTTTTTTGTCCAGATCCTTAGATGGGGATGTGGAAAAGATTG  50
      |||||||||||||||||  |||   ||  ||     ||| ||  |||   
seq2  TATTTTTTTTTTTTTGTTAAGA--ATTCTAT-----TGTTGAGCAGA---  40

seq1  CATCCCCATTCCTTAGTGGCTTAG-CTGATGCTGTTCTTTGGCCTGGAGT  99
                 |||||    |||| ||||    |||           || 
seq2  ----------ACTTAGGAAATTAGTCTGAACAGGTT-----------AGA  69

seq1  AGTAAAGAAAAATTAATGAGAATGTCCTGGAGAGATCACTCTTGTGCATC  149
       |    |  |       |||||    | ||| ||      ||| ||   |
seq2  GGGTGCGCCA-------GAGAA----CCGGACAG------CTTCTGGGAC  102

seq1  TGAACTGAATCACCAAGGTGTAAGACAGCTGAGTAACAAATAGCCAAATA  199
       |  | ||| |||  ||        | ||||||     | || ||   | 
seq2  -GGGCGGAAGCACAGAG--------CCGCTGAG---GCAGTACCC---TT  137

seq1  ACCAAATCCAAGAGAGACATGACAATTCATCTGA--AGAAGAAAATTTAA  247
        ||   |  ||| || |  | | |     | ||  ||| || |      
seq2  TGCAGGCCGCAGACAGCC--GGCCACCGTCCAGACCAGAGGACA----GG  181

seq1  TGTTCCCATAATTCTGCATGTTAAAAATTTGCTTGTAAAAGTAGTTTAGT  297
      ||| | | |   || | | |       |  || |  |  || ||    ||
seq2  TGTCCGCCTGGCTCGGGAGG--CGGCCTCAGCCT-CAGGAGCAG--CGGT  226

seq1  GGCCTTCCGGTCGGCCCCAGCACTGTGT-CACCTTAGGCATGGAGTCTGC  346
       ||| ||   | ||  |||| |||   |  | |||||| ||  |||||||
seq2  CGCCATC---TTGGTTCCAGGACTCCCTGGAACTTAGGAATTTAGTCTGC  273

seq1  AGACAT-----------CCCCA---------AGGTTC---------CCAG  367
      | |  |           || ||         || |||         ||| 
seq2  ACAGGTGAGAGTCTGCACCACAGAAGCTGACAGCTTCTGGGAACTGCCAA  323

seq1  AGCACTCTCCACGGGATCTTAG-GACCTCTGGTGAGTGGAACACGACTTC  416
      ||||     ||| |  ||| || ||  ||  ||    ||    |  ||||
seq2  AGCA----ACACAGCTTCTGAGAGAGGTCCTGTTTTGGGCCTTCTTCTTC  369

seq1  TGCCAGGAGGCAGGTTCTAACACCAGATATCTGGGCACCTTCTCTGCAAG  466
        |||||||| |||| | || || ||||||||| |||||||  ||| || 
seq2  GACCAGGAGG-AGGTCCAAAAACAAGATATCTGCGCACCTTTCCTGTAA-  417

seq1  AGGAGAGCTTGCCTGCAGAGAGTGCTCTGACCACTGAAACTC--AGGAGA  514
        ||||||||||| |||||||||||||||| |||||||||||  ||||||
seq2  --GAGAGCTTGCCAGCAGAGAGTGCTCTGAGCACTGAAACTCAGAGGAGA  465

seq1  GA  516
      ||
seq2  GA  467

seq1: chr11_93426455_93427317
seq2: B6Ng01-020O07.g_69_927

seq1  GAATTCTTAAGACTTGGGATCCATTATAATTTCCCTAAGTAGAAGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGACTTGGGATCCATTATAATTTCCCTAAGTAGAAGATGAG  50

seq1  ATGTGGGGATACAGGGTGGAGAGGGGCATATCAGATGAAAGGCCAATCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGATACAGGGTGGAGAGGGGCATATCAGATGAAAGGCCAATCGC  100

seq1  AACAAAGTCTCAAGCTACCAAGCGACTGTGCTTGGGAAGAGGAGACTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTCTCAAGCTACCAAGCGACTGTGCTTGGGAAGAGGAGACTTGT  150

seq1  GTTCAAGTCTAGAAGTCACTGTTTAACAGCTAAGTCAATATGGGTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTCTAGAAGTCACTGTTTAACAGCTAAGTCAATATGGGTCCTTT  200

seq1  GTTTCTTCTCTTGTTTGGTATATGCTTCAAAGCGTTCTGGCCTAATTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTCTTGTTTGGTATATGCTTCAAAGCGTTCTGGCCTAATTCTC  250

seq1  AGCAGGGTTATTGTGTGGGTCTAAGGAGGGAGTTTCTGAAGAAACCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTTATTGTGTGGGTCTAAGGAGGGAGTTTCTGAAGAAACCTCAT  300

seq1  AATTACAAGGCCCTCGAGTATGAGCTGTTTTATCCATCAAGTGCCTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAGGCCCTCGAGTATGAGCTGTTTTATCCATCAAGTGCCTAGAA  350

seq1  CTGCTTGAGGCCAAGGCTGGTTCCCCATGTTGACTGCCATTTCCCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGAGGCCAAGGCTGGTTCCCCATGTTGACTGCCATTTCCCAACAC  400

seq1  AGTGCTTGGTTCAGAAGGAATGTTGCTTCTTCTCTATGGGTGAAAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGTTCAGAAGGAATGTTGCTTCTTCTCTATGGGTGAAAACCAC  450

seq1  ACAGTGCCTTCCCACCTTGGGAACGCCCCATACTGACTATAGGAAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCTTCCCACCTTGGGAACGCCCCATACTGACTATAGGAAGGAGA  500

seq1  GAGACCCTTGCTGCCGACCCTACCCATTCACTGGTCAACCCTGTTCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTTGCTGCCGACCCTACCCATTCACTGGTCAACCCTGTTCTGGT  550

seq1  AGAAACAGCCTTCTCCTTGGTAAATGACAGTAGTCCCAAGGCAGAGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCCTTCTCCTTGGTAAATGACAGTAGTCCCAAGGCAGAGCCAT  600

seq1  GACATTTGGGGAAAGCCCTTGCTGAATGCTTGGGTCTCAATCACAGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGGGGAAAGCCCTTGCTGAATGCTTGGGTCTCAATCACAGGACT  650

seq1  AGGATGAAAAGACAACACATTGTGATCTTCCCCCAGAGAGATTAGGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAAAGACAACACATTGTGATCTTCCCCCAGAGAGATTAGGCCCA  700

seq1  GT-GGTTTCCAAGTAACACCACAGAGCTGTTTCGTGCTCACAGACAGGCT  749
      || |||||||||||||||||||| |||||||||||||||||| |||||||
seq2  GTGGGTTTCCAAGTAACACCACATAGCTGTTTCGTGCTCACA-ACAGGCT  749

seq1  TGGAAGGATGCTGAAGTCTTAATATAGACTGTCCACACGCCTCTTCCCAA  799
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TGGAAGGATGCTGAAGTCTTAATATAGACTG-CCACACGCCTCTTTCCAA  798

seq1  ATGCTGTCAGCAAAATGCTATCTCCACTCCTCTCCCAGGGTGTATTCTGG  849
      ||||||||||| ||||||||||||| ||||||| ||| ||||||||||||
seq2  ATGCTGTCAGC-AAATGCTATCTCCTCTCCTCTTCCA-GGTGTATTCTGG  846

seq1  GAGCCTGAGACAAG  863
      |||||||| |||||
seq2  GAGCCTGA-ACAAG  859