BAC Information

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BAC

Clone NameB6Ng01-021C09
Chromosome11 (Build37)
Map Location 102,712,789 - 102,832,083
singlet/doubletdoublet
Overlap geneEftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
Upstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b
Downstream geneDcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021C09.bB6Ng01-021C09.g
ACCDH853737DH853738
length1,065907
definitionDH853737|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C09, 5' end.DH853738|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,712,789 - 102,713,866)(102,831,173 - 102,832,083)
sequence
gaattcctttttcccaacacaaggagcaactaaagaaaacagttgggaaa
accctgttgttggtttaaatactatcatgactctgctgcccctgcaggga
agagagcttccaagccaccgtgggaggacacacacaggatcgtgtttgtt
tttcacggtgaggcatcatgtgcccagagtgtcctaagatcctcacctac
ctgccaagctgcagcactgcagccgtgagccactctgccagccaaggaca
gtaacgtcacgggccttgaacgactttattacctgtgaactcgccaaaga
actttttgcagaccagcctgagcagggggcggatgttcagctttagctct
tccttggtgaggtggatgccaagttcgtccagggtccttggcaggctggt
gtccacatcacccaccacctgtgcacatagaaggtcaactatgtagtgac
aaccctagagaagtattccacatgagcgaagggggccgagacaaatctta
caaggagcctccagcggggagggctctgggcaacaacagtctgatttgga
ggagtgagtctatgctacctagccttgacctggtcaggtctccacacact
gtcagtgctgccccctggcgtctgagccatcctacctaaacactgcccag
atttggaggctcatttattacactggaaggaaccaaaaaaggccacctgt
cagtacagagctaggctaaatcatcctctgcagacttaacgtctctctac
agtggcagattctataaatttcttttattaatccattccagtctgacacg
agatcctaagtgttttctatcactgataaattctagtcattattttgttc
tgctgctatgttctctcttttgtgggatgcaacggccacacacgtgtgtg
catgtgaccatccatccgtacgtgtgtatcactgtacacagcactgactg
gacagtctgcatatctagtcttgtcttgaagaaagatcttgcatgacgct
ctgcaggtactttcacctcacgctcgcgcttagcacgaattcattaacaa
ggtgcttactctact
gaattcctgttgcctggtccctgggcccagagcagctgctccctcgttta
attaatggcactggttccgagttcttgatgaagggcgatcatgagctatc
gctcccctcaagtctccatggggctttccattaagcaagagtttcaggag
gggttgggagagacggggacagctcacagggctgcctcactgagaactgc
atcccttcccaactctcaacccctcttttgccctcacctcatccttccct
cttccctttgtcttggccgctggtcttccacgctcttatgagtctcctcc
atcctctgcttccttccctgaacctaccttctttcagttgtaagtgggcc
actgagtgtggtaacctgggctttccctaggagatcagctcaccccagaa
acaacgctctatgaactatcacttttagcaattagcagcctgcctggggt
aagggaatgctggagttgtccagtgggcaacagctggattcctcagagct
tatctcaggaaaatgaaatgagggaggtcttctcatgtcaactctgtccc
ctgctcatagctggctggtatggaagtcaggaccagtttagatggagaag
gactgggtcagagaccaacagatccactcctggccaactggtcaagtcca
caaagttagaggaagttcaggttagttccagtcggagccagacaaacccc
gcagttaccagcagacagcaacagaagatgctcaggaaccttgttagatc
tatgactggagaaaatttttagccatggttaatttgaggtgtcatttggg
ggagcggttaatgaagctgttactgatggttggggtggctggtcatggtg
gacatttggtgttgagagaccactatgagctattgaattacactctggtg
tcgggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102712789_102713866
seq2: B6Ng01-021C09.b_43_1107

seq1  GAATTCCTTTTTCCCAACACAAGGAGCAACTAAAGAAAACAGTTGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTCCCAACACAAGGAGCAACTAAAGAAAACAGTTGGGAAA  50

seq1  ACCCTGTTGTTGGTTTAAATACTATCATGACTCTGCTGCCCCTGCAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTGTTGGTTTAAATACTATCATGACTCTGCTGCCCCTGCAGGGA  100

seq1  AGAGAGCTTCCAAGCCACCGTGGGAGGACACACACAGGATCGTGTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTTCCAAGCCACCGTGGGAGGACACACACAGGATCGTGTTTGTT  150

seq1  TTTCACGGTGAGGCATCATGTGCCCAGAGTGTCCTAAGATCCTCACCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGGTGAGGCATCATGTGCCCAGAGTGTCCTAAGATCCTCACCTAC  200

seq1  CTGCCAAGCTGCAGCACTGCAGCCGTGAGCCACTCTGCCAGCCAAGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGCTGCAGCACTGCAGCCGTGAGCCACTCTGCCAGCCAAGGACA  250

seq1  GTAACGTCACGGGCCTTGAACGACTTTATTACCTGTGAACTCGCCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGTCACGGGCCTTGAACGACTTTATTACCTGTGAACTCGCCAAAGA  300

seq1  ACTTTTTGCAGACCAGCCTGAGCAGGGGGCGGATGTTCAGCTTTAGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGCAGACCAGCCTGAGCAGGGGGCGGATGTTCAGCTTTAGCTCT  350

seq1  TCCTTGGTGAGGTGGATGCCAAGTTCGTCCAGGGTCCTTGGCAGGCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTGAGGTGGATGCCAAGTTCGTCCAGGGTCCTTGGCAGGCTGGT  400

seq1  GTCCACATCACCCACCACCTGTGCACATAGAAGGTCAACTATGTAGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATCACCCACCACCTGTGCACATAGAAGGTCAACTATGTAGTGAC  450

seq1  AACCCTAGAGAAGTATTCCACATGAGCGAAGGGGGCCGAGACAAATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGAGAAGTATTCCACATGAGCGAAGGGGGCCGAGACAAATCTTA  500

seq1  CAAGGAGCCTCCAGCGGGGAGGGCTCTGGGCAACAACAGTCTGATTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCCTCCAGCGGGGAGGGCTCTGGGCAACAACAGTCTGATTTGGA  550

seq1  GGAGTGAGTCTATGCTACCTAGCCTTGACCTGGTCAGGTCTCCACACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGTCTATGCTACCTAGCCTTGACCTGGTCAGGTCTCCACACACT  600

seq1  GTCAGTGCTGCCCCCTGGCGTCTGAGCCATCCTACCTAAACACTGCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTGCCCCCTGGCGTCTGAGCCATCCTACCTAAACACTGCCCAG  650

seq1  ATTTGGAGGCTCATTTATTACACTGGAAGGAACCAAAAAAGGCCACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGGCTCATTTATTACACTGGAAGGAACCAAAAAAGGCCACCTGT  700

seq1  CAGTACAGAGCTAGGCTAAATCATCCTCTGCAGACTTAAGGTCTCTCTAC  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGTACAGAGCTAGGCTAAATCATCCTCTGCAGACTTAACGTCTCTCTAC  750

seq1  AGTGGCAGATTCTATAAATTTCTTTTATTAATCCATTCCAGTCTGACACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGATTCTATAAATTTCTTTTATTAATCCATTCCAGTCTGACACG  800

seq1  AGATCCTAAGTGTTTTCTATCACTGATAAATTCTAGTCATTATTTTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTAAGTGTTTTCTATCACTGATAAATTCTAGTCATTATTTTGTTC  850

seq1  TGCTGCTATGTTCTCTTCTTTTGTGGGATGCAACGGCCACACACGGTGTG  900
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TGCTGCTATGTTCTC-TCTTTTGTGGGATGCAACGGCCACACAC-GTGTG  898

seq1  TGCATGTGACCATCCATCCGTACGTGTGTATCCACTGTACACAGCACTGA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCATGTGACCATCCATCCGTACGTGTGTAT-CACTGTACACAGCACTGA  947

seq1  CTGGACAGCCTGCATATTCTAGTCCTGTCTTGGAAGAAAGATC-TGCATG  999
      |||||||| ||||||| ||||||| |||||| ||||||||||| ||||||
seq2  CTGGACAGTCTGCATA-TCTAGTCTTGTCTT-GAAGAAAGATCTTGCATG  995

seq1  AACGCTCCTGCAGGGTACTTTCACCTCCACAGCTCGGCGCTTTAGCACGA  1049
       ||||| ||||| ||||||||||||| ||| |||| |||| |||||||||
seq2  -ACGCT-CTGCA-GGTACTTTCACCT-CAC-GCTC-GCGC-TTAGCACGA  1038

seq1  ATTCATTAAACACAGTGCTATACTCTACT  1078
      ||||||| ||||  ||||| |||||||||
seq2  ATTCATT-AACAAGGTGCT-TACTCTACT  1065

seq1: chr11_102831173_102832083
seq2: B6Ng01-021C09.g_68_974 (reverse)

seq1  AGCCCGACACCAGTGTGTGAATACAATAGCTCAGTAGTGGTCTCTCAACA  50
      ||||||||||||| |||| ||| |||||||||| ||||||||||||||||
seq2  AGCCCGACACCAGAGTGT-AATTCAATAGCTCA-TAGTGGTCTCTCAACA  48

seq1  CCAAATGTCCACCATGACCAGCCACCCCAACCATCAGTAACAGCCTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCAAATGTCCACCATGACCAGCCACCCCAACCATCAGTAACAG-CTTCAT  97

seq1  TAACCGCTCCCCCAAATGACACCTCAAATTAACCATGGCTAATAATTTTT  150
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TAACCGCTCCCCCAAATGACACCTCAAATTAACCATGGCTAA-AAATTTT  146

seq1  CTCCAGTCATAGATCTAACAAGGTTCCTGAGCATCTTCTGTTGCTGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCATAGATCTAACAAGGTTCCTGAGCATCTTCTGTTGCTGTCTG  196

seq1  CTGGTAACTGCGGGGTTTGTCTGGCTCCGACTGGAACTAACCTGAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAACTGCGGGGTTTGTCTGGCTCCGACTGGAACTAACCTGAACTTC  246

seq1  CTCTAACTTTGTGGACTTGACCAGTTGGCCAGGAGTGGATCTGTTGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACTTTGTGGACTTGACCAGTTGGCCAGGAGTGGATCTGTTGGTCT  296

seq1  CTGACCCAGTCCTTCTCCATCTAAACTGGTCCTGACTTCCATACCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCAGTCCTTCTCCATCTAAACTGGTCCTGACTTCCATACCAGCCA  346

seq1  GCTATGAGCAGGGGACAGAGTTGACATGAGAAGACCTCCCTCATTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGAGCAGGGGACAGAGTTGACATGAGAAGACCTCCCTCATTTCATT  396

seq1  TTCCTGAGATAAGCTCTGAGGAATCCAGCTGTTGCCCACTGGACAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGATAAGCTCTGAGGAATCCAGCTGTTGCCCACTGGACAACTCC  446

seq1  AGCATTCCCTTACCCCAGGCAGGCTGCTAATTGCTAAAAGTGATAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCCCTTACCCCAGGCAGGCTGCTAATTGCTAAAAGTGATAGTTCA  496

seq1  TAGAGCGTTGTTTCTGGGGTGAGCTGATCTCCTAGGGAAAGCCCAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCGTTGTTTCTGGGGTGAGCTGATCTCCTAGGGAAAGCCCAGGTTA  546

seq1  CCACACTCAGTGGCCCACTTACAACTGAAAGAAGGTAGGTTCAGGGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCAGTGGCCCACTTACAACTGAAAGAAGGTAGGTTCAGGGAAGG  596

seq1  AAGCAGAGGATGGAGGAGACTCATAAGAGCGTGGAAGACCAGCGGCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGGATGGAGGAGACTCATAAGAGCGTGGAAGACCAGCGGCCAAG  646

seq1  ACAAAGGGAAGAGGGAAGGATGAGGTGAGGGCAAAAGAGGGGTTGAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGAAGAGGGAAGGATGAGGTGAGGGCAAAAGAGGGGTTGAGAGT  696

seq1  TGGGAAGGGATGCAGTTCTCAGTGAGGCAGCCCTGTGAGCTGTCCCCGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGGATGCAGTTCTCAGTGAGGCAGCCCTGTGAGCTGTCCCCGTC  746

seq1  TCTCCCAACCCCTCCTGAAACTCTTGCTTAATGGAAAGCCCCATGGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAACCCCTCCTGAAACTCTTGCTTAATGGAAAGCCCCATGGAGAC  796

seq1  TTGAGGGGAGCGATAGCTCATGATCGCCCTTCATCAAGAACTCGGAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGAGCGATAGCTCATGATCGCCCTTCATCAAGAACTCGGAACCA  846

seq1  GTGCCATTAATTAAACGAGGGAGCAGCTGCTCTGGGCCCAGGGACCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTAATTAAACGAGGGAGCAGCTGCTCTGGGCCCAGGGACCAGGC  896

seq1  AACAGGAATTC  911
      |||||||||||
seq2  AACAGGAATTC  907