BAC Information

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BAC

Clone NameB6Ng01-022C13
Chromosome11 (Build37)
Map Location 99,253,306 - 99,368,552
singlet/doubletdoublet
Overlap geneA830036E02Rik, Krt20, Krt23
Upstream genePerld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10
Downstream geneKrt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022C13.bB6Ng01-022C13.g
ACCDH854453DH854454
length1,035995
definitionDH854453|Mus musculus domesticus DNA, BAC clone: B6Ng01-022C13, 5' end.DH854454|Mus musculus domesticus DNA, BAC clone: B6Ng01-022C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,367,514 - 99,368,552)(99,253,306 - 99,254,303)
sequence
gaattcaccagtctgagaacagatacaggttattgtaaataagtacaggc
tgtgctgtggagacctggagaccagaagactgtgctagacagcattcatc
ccaccacattctcaatgcacaagtccagttgttgggttcacatgagttta
ttgatcaaatactggttcttccctaccagctgcaaaactaagaggtctta
actggaggaacaagcaggaatgggggaagcctcattttcaatctcgttca
tgatgagtatagtgttaaaacagtagcttccagacatccatgtttccaac
actccacttgtggtttcatcagcaattgtgggttgtaagagctgtagagg
acttgttggttctgacctatcttacaattaacaggatacggggtaatcag
gtttgatcttcagggtctattcccaggatctctttaagaaagggacaaat
tggctgtcagggacaggaggggtatgacaatgaagaaagacaaaattgtt
tgcgctgtgatcagaaagtgaggagagccaaggagtcatctggagctcac
ccaagcaggacagaatgtccagtggctctaggtcaccaagaccacatcca
ttgtctcaattacaattccatctcttcatagcaatgttaagcctgtgtgg
taaacagcaattagtggtgaagaaaccctgtgcccgggtggccctgcctg
agaagtaggtccataaaggatgttgagagctgtggacaaaggatgactct
ggggaggagacaagcttgagtcataatgaaaagataacatattcactttt
aagtcctaattgtggggcctgagggactaaaatgttcagaaacagttgtg
attctgtgtcatttcacctctcctgtaagaatgaattaatatgacttgaa
aatccacagctgtgtgaagtcttacagaaatacatgttctcattgtttta
aaaccctataaactgggttagtcagaatttgggactaaggcagctacagt
tgtctgggctgtattgccacagagtcccactcaac
gaattccacagcacagtggaattgagctgagtcttgtgaagcatgggtta
gaatcttcagtatgtgcaacagcagagagagggctgttctgggaagtgag
gactgaaaaaaatacccaggtgttttagcaggtggagactcgaagtggac
cagtttggttggaacgagtcgcccatattcattaatttattcatttcttc
aacaggtttaattgagcgcctataatatgacctgggtttacacagatgac
taagatataatttctgctcctcaagggatatagtgtgtccctggagaggc
aaaccaacatgcccacggaggatccaggagactgttagaacagtctaggc
tgccttggaggggatgggcagagtgctaagggagtacagagcaggattcc
gggagttgtgtgagagacttgtatagctcattgtgacaaggtattgctaa
ggtccatgcctcttcattgaccaacgtgtaaaattcagtgatcctaaatc
tgcattatcttagatcctcccacccctcccagtttcttcgtctgtactgt
gatggaaactgcctggtggctctggaggctgctgtagggattccgtgggt
ggcctctggagtcggactcactgtttactgtgaagcttgatcctcgtttc
ctctctctaaagtaggaattataactttgctaactgtggtgtcatcttgg
gagactcatgagttaacaaatacaacgcattaggatagcagatggcaggc
gtagcggaagatcttggcgaacgcttttgttattctcactgattctgttt
cttacagcctaacccacttagggctgcaaatatgaaagcatgagccatgg
gagatggctttaggtgccacagtgctcgtacttgctgagctcattcagcc
cctcagaacctgtgtgaaaaagctgagcatgacgatccctccctggaatc
cagtgcagtagacgagaccagcggctctcttgaggctggctgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99367514_99368552
seq2: B6Ng01-022C13.b_45_1079 (reverse)

seq1  GTTGAGTAGGACTCTGTTGGCATAACAGCACAGACAACTGTAGCTGCTTT  50
      ||||||| |||||||| |||||  ||||| ||||||||||||||||| ||
seq2  GTTGAGTGGGACTCTG-TGGCAATACAGCCCAGACAACTGTAGCTGCCTT  49

seq1  AGGTCCCAAA-TCTGAACTTACCCAGTTTATAGGTGTTTTTAAAACAATG  99
      | |||||||| |||| ||| |||||||||||||  | |||||||||||||
seq2  A-GTCCCAAATTCTG-ACTAACCCAGTTTATAG--GGTTTTAAAACAATG  95

seq1  AGAACATGTATTTCTGTAAGACTTCACACAGCTGTGGATTTTCAAGTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGTATTTCTGTAAGACTTCACACAGCTGTGGATTTTCAAGTCAT  145

seq1  ATTTAATTCATTCTTACAGGAGAGGTTGAAATGACACAGAATCACAACTG  199
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  A-TTAATTCATTCTTACAGGAGAGG-TGAAATGACACAGAATCACAACTG  193

seq1  TTTCTGAACATTTAGTTCCCTCAGGCCCCACAATTAGGACTT-AAAGTGA  248
      |||||||||||||   |||||||||||||||||||||||||| |||||||
seq2  TTTCTGAACATTTTAGTCCCTCAGGCCCCACAATTAGGACTTAAAAGTGA  243

seq1  ATATGTTATCTTTTCATTATGACTCAAGCTTGTCTCCT-CCCAGAGTCAT  297
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATATGTTATCTTTTCATTATGACTCAAGCTTGTCTCCTCCCCAGAGTCAT  293

seq1  CCTTTGTCCACAGCTCTCAACATCCTTTATGGACCTACTTCTCAGGCAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCCACAGCTCTCAACATCCTTTATGGACCTACTTCTCAGGCAGG  343

seq1  GCCACCCGGGCACAGGGTTTCTTCACCACTAATTGCTGTTTACCACACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCGGGCACAGGGTTTCTTCACCACTAATTGCTGTTTACCACACAG  393

seq1  GCTTAACATTGCTATGAAGAGATGGAATTGTAATTGAGACAATGGATGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACATTGCTATGAAGAGATGGAATTGTAATTGAGACAATGGATGTG  443

seq1  GTCTTGGTGACCTAGAGCCACTGGACATTCTGTCCTGCTTGGGTGAGCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTGACCTAGAGCCACTGGACATTCTGTCCTGCTTGGGTGAGCTC  493

seq1  CAGATGACTCCTTGGCTCTCCTCACTTTCTGATCACAGCGCAAACAATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACTCCTTGGCTCTCCTCACTTTCTGATCACAGCGCAAACAATTT  543

seq1  TGTCTTTCTTCATTGTCATACCCCTCCTGTCCCTGACAGCCAATTTGTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTTCATTGTCATACCCCTCCTGTCCCTGACAGCCAATTTGTCC  593

seq1  CTTTCTTAAAGAGATCCTGGGAATAGACCCTGAAGATCAAACCTGATTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAAGAGATCCTGGGAATAGACCCTGAAGATCAAACCTGATTAC  643

seq1  CCCGTATCCTGTTAATTGTAAGATAGGTCAGAACCAACAAGTCCTCTACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTATCCTGTTAATTGTAAGATAGGTCAGAACCAACAAGTCCTCTACA  693

seq1  GCTCTTACAACCCACAATTGCTGATGAAACCACAAGTGGAGTGTTGGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACAACCCACAATTGCTGATGAAACCACAAGTGGAGTGTTGGAAA  743

seq1  CATGGATGTCTGGAAGCTACTGTTTTAACACTATACTCATCATGAACGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGTCTGGAAGCTACTGTTTTAACACTATACTCATCATGAACGAG  793

seq1  ATTGAAAATGAGGCTTCCCCCATTCCTGCTTGTTCCTCCAGTTAAGACCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATGAGGCTTCCCCCATTCCTGCTTGTTCCTCCAGTTAAGACCT  843

seq1  CTTAGTTTTGCAGCTGGTAGGGAAGAACCAGTATTTGATCAATAAACTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTTGCAGCTGGTAGGGAAGAACCAGTATTTGATCAATAAACTCA  893

seq1  TGTGAACCCAACAACTGGACTTGTGCATTGAGAATGTGGTGGGATGAATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCCAACAACTGGACTTGTGCATTGAGAATGTGGTGGGATGAATG  943

seq1  CTGTCTAGCACAGTCTTCTGGTCTCCAGGTCTCCACAGCACAGCCTGTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGCACAGTCTTCTGGTCTCCAGGTCTCCACAGCACAGCCTGTAC  993

seq1  TTATTTACAATAACCTGTATCTGTTCTCAGACTGGTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAATAACCTGTATCTGTTCTCAGACTGGTGAATTC  1035

seq1: chr11_99253306_99254303
seq2: B6Ng01-022C13.g_68_1062

seq1  GAATTCCACAGCACAGTGGAATTGAGCTGAGTCTTGTGAAGCATGGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCACAGTGGAATTGAGCTGAGTCTTGTGAAGCATGGGTTA  50

seq1  GAATCTTCAGTATGTGCAACAGCAGAGAGAGGGCTGTTCTGGGAAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCAGTATGTGCAACAGCAGAGAGAGGGCTGTTCTGGGAAGTGAG  100

seq1  GACTGAAAAAAATACCCAGGTGTTTTAGCAGGTGGAGACTCGAAGTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAAAAAATACCCAGGTGTTTTAGCAGGTGGAGACTCGAAGTGGAC  150

seq1  CAGTTTGGTTGGAACGAGTCGCCCATATTCATTAATTTATTCATTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGTTGGAACGAGTCGCCCATATTCATTAATTTATTCATTTCTTC  200

seq1  AACAGGTTTAATTGAGCGCCTATAATATGACCTGGGTTTACACAGATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTTTAATTGAGCGCCTATAATATGACCTGGGTTTACACAGATGAC  250

seq1  TAAGATATAATTTCTGCTCCTCAAGGGATATAGTGTGTCCCTGGAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATAATTTCTGCTCCTCAAGGGATATAGTGTGTCCCTGGAGAGGC  300

seq1  AAACCAACATGCCCACGGAGGATCCAGGAGACTGTTAGAACAGTCTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACATGCCCACGGAGGATCCAGGAGACTGTTAGAACAGTCTAGGC  350

seq1  TGCCTTGGAGGGGATGGGCAGAGTGCTAAGGGAGTACAGAGCAGGATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGAGGGGATGGGCAGAGTGCTAAGGGAGTACAGAGCAGGATTCC  400

seq1  GGGAGTTGTGTGAGAGACTTGTATAGCTCATTGTGACAAGGTATTGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGTGTGAGAGACTTGTATAGCTCATTGTGACAAGGTATTGCTAA  450

seq1  GGTCCATGCCTCTTCATTGACCAACGTGTAAAATTCAGTGATCCTAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGCCTCTTCATTGACCAACGTGTAAAATTCAGTGATCCTAAATC  500

seq1  TGCATTATCTTAGATCCTCCCACCCCTCCCAGTTTCTTCGTCTGTACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATCTTAGATCCTCCCACCCCTCCCAGTTTCTTCGTCTGTACTGT  550

seq1  GATGGAAACTGCCTGGTGGCTCTGGAGGCTGCTGTAGGGATTCCGTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAACTGCCTGGTGGCTCTGGAGGCTGCTGTAGGGATTCCGTGGGT  600

seq1  GGCCTCTGGAGTCGGACTCACTGTTTACTGTGAAGCTTGATCCTCGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGGAGTCGGACTCACTGTTTACTGTGAAGCTTGATCCTCGTTTC  650

seq1  CTCTCTCTAAAGTAGGAATTATAACTTTGCTAACTGTGGTGTCATCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTAAAGTAGGAATTATAACTTTGCTAACTGTGGTGTCATCTTGG  700

seq1  GAGACTCATGAGTTAACAAATACAACGCATTAGGATAGCAGATGGCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCATGAGTTAACAAATACAACGCATTAGGATAGCAGATGGCAGGC  750

seq1  GTAGCGGAAGAGCTTGGCGAACGCTTTTGTTATTCTCACTGATTTCTGTT  800
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  GTAGCGGAAGATCTTGGCGAACGCTTTTGTTATTCTCACTGA-TTCTGTT  799

seq1  TCTTACAGCCTAACCCACTTAGGGCTGCAAAATATGAAGGCATGAGCCAT  850
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  TCTTACAGCCTAACCCACTTAGGGCTGC-AAATATGAAAGCATGAGCCAT  848

seq1  GGGAGATGGC-TTAGGTGCCACAGTGCTCGTACTTGCTGAGCTCATTCAG  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGGCTTTAGGTGCCACAGTGCTCGTACTTGCTGAGCTCATTCAG  898

seq1  CCCCTCAGAACCTGTGTGAAAAAGCTGAGCATGACGATCCCTCCCTGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGAACCTGTGTGAAAAAGCTGAGCATGACGATCCCTCCCTGGAA  948

seq1  TTCCAGTGCAAGTAGACAGAGACCAGCGGC-CCCCTGAGGCTGGCTGACC  998
       |||||||| ||||||| |||||||||||| | | |||||||||||||||
seq2  -TCCAGTGC-AGTAGAC-GAGACCAGCGGCTCTCTTGAGGCTGGCTGACC  995