BAC Information

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BAC

Clone NameB6Ng01-022F11
Chromosome11 (Build37)
Map Location 28,312,151 - 28,478,859
singlet/doubletdoublet
Overlap geneCcdc85a
Upstream geneLOC100042377, EG626571
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022F11.bB6Ng01-022F11.g
ACCDH854589DH854590
length882825
definitionDH854589|Mus musculus domesticus DNA, BAC clone: B6Ng01-022F11, 5' end.DH854590|Mus musculus domesticus DNA, BAC clone: B6Ng01-022F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,312,151 - 28,313,032)(28,478,036 - 28,478,859)
sequence
gaattctttgcattcctgttcctttgtcatgtcttactgcttcattaatg
ctctagctctttagtttcatgctttctagactccccatttccatgctatc
ctcactttctttgctagggtcacttccatgtcacttctaatttagaaaga
ggctttttctgactaatgtgtccccatcactctccaattctaaatactgc
ttttatttgcttcagaaaatattgcatatttaaggtcttaaaaagaaccc
acctgtttaactgtaaactgcatgagagagagagagaccttggatttctt
attcaatattatgtctccattgcctaaacaagtgtcctgaaaaaagagat
atgcaaaacacattcaaggggtaaaagatggccagacatggtagcacagg
aaagctggtatctgtgactttgaagtcagcctagtctacaaagcaagttc
caggacagccagtgttgttacacagagaaaccctattttaaaaaacaaaa
aaacaaaacaaaatgttttgaggtaaaagatggagtggactatctgccat
gacctattgacattctagcttctgactattaagagtttttgttgttgttg
ttgttgttgttgttacactcacaaaagtaaagagaatccactaatttttc
tactatgtataacctaaataaaggtaacctttaagatgcaagccaagata
ttagaacaagttgatttagaaacttccagaaagagtgaaagtgaaggtat
gaggaaatcaactttaatatttgttttaatttgaaattttgtcatagcat
tatcctagaagacagctaaactggtagaaacaggttttctaaggttgctc
aaaagtgtcttctctaaaaaagtaaaaatact
gaattcatagtcaagtagaaaaagtatttattaattttccctggcaatgg
gagatacctgaattgtttccggacgggctcaatatgcacaaagtgttttt
gaagaccagtctgacaaggagtgctgactgaggttagtgagagaagacag
aaaacaaggcagtggctgaaggtaggaggaagagtaaggtttttccccta
gcgtttttcatacatgttactactgtctgaatttgctttctgatactcct
ttaccagagtgaaagttgtaggatgttaggttccagggtttcgtgaatgt
tcatgaacattcctaacattttcactagtacctagcacatagtctatggt
tactaattctctgtgattgaacaaatgaatcactattcatgctattcatg
ctacagaaatagatagagacagaacatttgaatttgtgtcgcacttgagg
gattttttttttcactgtatcctaaggggaacgggaagttactaaagctt
catggctggaggaaaaatgtaacacatgaaggtccaagttcataacacat
gaaggtccaagttcataacacatgagggtccaagttcataacacatgaag
gtctaagttcataacacatggaggtcaagttcataacacatgaaggtcaa
gttcataacacatgggaggtcaagttcataacacatgaaggtcaagttca
taacacatgaaggtcccagttctgaagatttgttaggctcagaaaatgga
aggtgagggaggagatactggatgacccttttattctttaaagagcaatg
ggtggagtgacatttgctaagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_28312151_28313032
seq2: B6Ng01-022F11.b_42_923

seq1  GAATTCTTTGCATTCCTGTTCCTTTGTCATGTCTTACTGCTTCATTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCATTCCTGTTCCTTTGTCATGTCTTACTGCTTCATTAATG  50

seq1  CTCTAGCTCTTTAGTTTCATGCTTTCTAGACTCCCCATTTCCATGCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTCTTTAGTTTCATGCTTTCTAGACTCCCCATTTCCATGCTATC  100

seq1  CTCACTTTCTTTGCTAGGGTCACTTCCATGTCACTTCTAATTTAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTCTTTGCTAGGGTCACTTCCATGTCACTTCTAATTTAGAAAGA  150

seq1  GGCTTTTTCTGACTAATGTGTCCCCATCACTCTCCAATTCTAAATACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTCTGACTAATGTGTCCCCATCACTCTCCAATTCTAAATACTGC  200

seq1  TTTTATTTGCTTCAGAAAATATTGCATATTTAAGGTCTTAAAAAGAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGCTTCAGAAAATATTGCATATTTAAGGTCTTAAAAAGAACCC  250

seq1  ACCTGTTTAACTGTAAACTGCATGAGAGAGAGAGAGACCTTGGATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTAACTGTAAACTGCATGAGAGAGAGAGAGACCTTGGATTTCTT  300

seq1  ATTCAATATTATGTCTCCATTGCCTAAACAAGTGTCCTGAAAAAAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATATTATGTCTCCATTGCCTAAACAAGTGTCCTGAAAAAAGAGAT  350

seq1  ATGCAAAACACATTCAAGGGGTAAAAGATGGCCAGACATGGTAGCACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAACACATTCAAGGGGTAAAAGATGGCCAGACATGGTAGCACAGG  400

seq1  AAAGCTGGTATCTGTGACTTTGAAGTCAGCCTAGTCTACAAAGCAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGTATCTGTGACTTTGAAGTCAGCCTAGTCTACAAAGCAAGTTC  450

seq1  CAGGACAGCCAGTGTTGTTACACAGAGAAACCCTATTTTAAAAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGTGTTGTTACACAGAGAAACCCTATTTTAAAAAACAAAA  500

seq1  AAACAAAACAAAATGTTTTGAGGTAAAAGATGGAGTGGACTATCTGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAATGTTTTGAGGTAAAAGATGGAGTGGACTATCTGCCAT  550

seq1  GACCTATTGACATTCTAGCTTCTGACTATTAAGAGTTTTTGTTGTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATTGACATTCTAGCTTCTGACTATTAAGAGTTTTTGTTGTTGTTG  600

seq1  TTGTTGTTGTTGTTACACTCACAAAAGTAAAGAGAATCCACTAA-TTTTC  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGTTGTTGTTGTTACACTCACAAAAGTAAAGAGAATCCACTAATTTTTC  650

seq1  TACTATGTATAACCTAAATAAAGGTAACCTTTAAGATGCAAGCCAAGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTATAACCTAAATAAAGGTAACCTTTAAGATGCAAGCCAAGATA  700

seq1  TTAGAACAAGTTGATTTAGAAACTTCCAGAAAGAGTGAAAGTGAAGGTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAAGTTGATTTAGAAACTTCCAGAAAGAGTGAAAGTGAAGGTAT  750

seq1  GAGGAAATCAACTTTAATATTTGTTTTAATTTGAAATTTTGTCATAGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATCAACTTTAATATTTGTTTTAATTTGAAATTTTGTCATAGCAT  800

seq1  TATCCTAGAAGACAGCTTAACTGGTAGAAACAGGTTTTCTAAGGTTGCTC  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATCCTAGAAGACAGCTAAACTGGTAGAAACAGGTTTTCTAAGGTTGCTC  850

seq1  AAAAGTGTCTTCTCTAAAAAAGTAGAAAATACT  882
      |||||||||||||||||||||||| ||||||||
seq2  AAAAGTGTCTTCTCTAAAAAAGTA-AAAATACT  882

seq1: chr11_28478036_28478859
seq2: B6Ng01-022F11.g_70_894 (reverse)

seq1  CACTCTTAGCAAATGTCACCTCCACCTATTGCTCTTTATACGAAT-AAAG  49
      |||||||||||||||||| ||||||| ||||||||||| | |||| ||||
seq2  CACTCTTAGCAAATGTCA-CTCCACCCATTGCTCTTTA-AAGAATAAAAG  48

seq1  GGTCATCCAGTATCTCCTCCCTCACCTTCCA-TTTCTGAGCCTAACAAAT  98
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTCATCCAGTATCTCCTCCCTCACCTTCCATTTTCTGAGCCTAACAAAT  98

seq1  CTTCAGAACTTGGACCTTCATGTGTTATGAACTTGACCTTCATGTGTTAT  148
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAACTGGGACCTTCATGTGTTATGAACTTGACCTTCATGTGTTAT  148

seq1  GAACTTGACCT-CCATGTGTTATGAACTTGACCTTCATGTGTTATGAACT  197
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGACCTCCCATGTGTTATGAACTTGACCTTCATGTGTTATGAACT  198

seq1  TGACCTCCATGTGTTATGAACTTAGACCTTCATGTGTTATGAACTTGGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCATGTGTTATGAACTTAGACCTTCATGTGTTATGAACTTGGAC  248

seq1  CCTCATGTGTTATGAACTTGGACCTTCATGTGTTATGAACTTGGACCTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTGTTATGAACTTGGACCTTCATGTGTTATGAACTTGGACCTTC  298

seq1  ATGTGTTACATTTTTCCTCCAGCCATGAAGCTTTAGTAACTTCCCGTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTACATTTTTCCTCCAGCCATGAAGCTTTAGTAACTTCCCGTTCC  348

seq1  CCTTAGGATACAGTGAAAAAAAAAATCCCTCAAGTGCGACACAAATTCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGATACAGTGAAAAAAAAAATCCCTCAAGTGCGACACAAATTCAA  398

seq1  ATGTTCTGTCTCTATCTATTTCTGTAGCATGAATAGCATGAATAGTGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGTCTCTATCTATTTCTGTAGCATGAATAGCATGAATAGTGATT  448

seq1  CATTTGTTCAATCACAGAGAATTAGTAACCATAGACTATGTGCTAGGTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTCAATCACAGAGAATTAGTAACCATAGACTATGTGCTAGGTAC  498

seq1  TAGTGAAAATGTTAGGAATGTTCATGAACATTCACGAAACCCTGGAACCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAAATGTTAGGAATGTTCATGAACATTCACGAAACCCTGGAACCT  548

seq1  AACATCCTACAACTTTCACTCTGGTAAAGGAGTATCAGAAAGCAAATTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTACAACTTTCACTCTGGTAAAGGAGTATCAGAAAGCAAATTCA  598

seq1  GACAGTAGTAACATGTATGAAAAACGCTAGGGGAAAAACCTTACTCTTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGTAACATGTATGAAAAACGCTAGGGGAAAAACCTTACTCTTCC  648

seq1  TCCTACCTTCAGCCACTGCCTTGTTTTCTGTCTTCTCTCACTAACCTCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTTCAGCCACTGCCTTGTTTTCTGTCTTCTCTCACTAACCTCAG  698

seq1  TCAGCACTCCTTGTCAGACTGGTCTTCAAAAACACTTTGTGCATATTGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTCCTTGTCAGACTGGTCTTCAAAAACACTTTGTGCATATTGAG  748

seq1  CCCGTCCGGAAACAATTCAGGTATCTCCCATTGCCAGGGAAAATTAATAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCCGGAAACAATTCAGGTATCTCCCATTGCCAGGGAAAATTAATAA  798

seq1  ATACTTTTTCTACTTGACTATGAATTC  824
      |||||||||||||||||||||||||||
seq2  ATACTTTTTCTACTTGACTATGAATTC  825