BAC Information

Click to search

BAC

Clone NameB6Ng01-023G08
Chromosome11 (Build37)
Map Location 58,964,146 - 59,031,767
singlet/doubletdoublet
Overlap geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1
Upstream geneGemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Downstream geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023G08.bB6Ng01-023G08.g
ACCDH855328DH855329
length182967
definitionDH855328|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G08, 5' end.DH855329|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,964,146 - 58,964,327)(59,030,798 - 59,031,767)
sequence
gaattcactgtgaggtgtcaggggcctgtaagcaggctgcggccctggcg
gagatgtttgagagagcccaggtcagacacacctgctccccagccaccta
gctttatgcatttgagtgacgtggctgggacggacgaagccactctgctt
tgattctgggttttttttgggggggggggtgt
gaattctatttccttcttcctaggtgattcttgttaaaaagaaagaaaat
gttcactgtggttatcatggcctttccatagagaaggcaggttaggccca
gcacactcagctgtgggctgtgcagatcacatgcaagaaagcagcactga
ataacagtagtcctggacaatgagacactcatgcaggcaaacttggctga
ggtccccgccactagacacagttattcaaggtgtctgtctgctactgtag
ggacttgagaggggtgcacatatcctctccccttaatcttcctctggatt
ttttggggggggggtcctgcttttccttttgaaacagggtcttacgtagt
tcagactgtccttcaaccccctactcatagccaaggatcttaaactctgc
ctcaaccttactggggtcatatatttgctcatacatggatagtgagcaca
acaactattgttttcttcacagcatctgaacataaagagctatcttaatg
tcccctctgccttaccaagcccccctggcacactggtggcaccctagtca
cctctggtggatcccttttgtttctccattggtaactttttttttttttt
ttttccgagacagagtttctctgtgtagctctggctgtcctggaactcac
tctgtagatcaggctggcctcgaactcagaaattcacctgtctctgcctc
ccaagtgctgggattaaaggcgtgcaccattttttgatgtgttgatttag
aaggacaactaattgctgagcagatagttaagctgtatctgtggagcttt
tttgtttaaaataaattatgtggtattgcctccttggtcctcccctccac
catacttggagtgcttcctgctctctggcatcttcttaatcatctggggc
tcacttcttttgcctggtttggatccccatgggaagcctgtcatgttgaa
ttgttttactatctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58964146_58964327
seq2: B6Ng01-023G08.b_43_224

seq1  GAATTCACTGTGAGGTGTCAGGGGCCTGTAAGCAGGCTGCGGCCCTGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGAGGTGTCAGGGGCCTGTAAGCAGGCTGCGGCCCTGGCG  50

seq1  GAGATGTTTGAGAGAGCCCAGGTCAGACACACCTGCTCCCCAGCCACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTTGAGAGAGCCCAGGTCAGACACACCTGCTCCCCAGCCACCTA  100

seq1  GCTTTATGCATTTGAGTGACGTGGCTGGGACGGACGAAGCCACTCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGCATTTGAGTGACGTGGCTGGGACGGACGAAGCCACTCTGCTT  150

seq1  TGATTCTGGGTTTTTTTTGGGGGGGGGGGTGT  182
      ||||||||||||||||||||||||||||||||
seq2  TGATTCTGGGTTTTTTTTGGGGGGGGGGGTGT  182

seq1: chr11_59030798_59031767
seq2: B6Ng01-023G08.g_68_1034 (reverse)

seq1  TATAGATAGTTAAAAACAATTTCAACATGACAAGGCTTCCCATGAGGATC  50
      ||||||||||  ||||||| ||||||||||| |||||||||||| |||||
seq2  TATAGATAGT--AAAACAA-TTCAACATGAC-AGGCTTCCCATGGGGATC  46

seq1  CAAACCAGGCAAAAGAAAGTGAGCCCAAGATGAATTAAGAAGATGCCAGA  100
      ||||||||||||||| |||||||||| ||||| |||||||||||||||||
seq2  CAAACCAGGCAAAAG-AAGTGAGCCCCAGATG-ATTAAGAAGATGCCAGA  94

seq1  GAGCAGGAAGCACT-CAAGTATGGGGGAGGGGAGGACCAAGGAGGCAATA  149
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  GAGCAGGAAGCACTCCAAGTATGGTGGAGGGGAGGACCAAGGAGGCAATA  144

seq1  -CACATAATTTATTTTAAACAAAAAAGCTCCACAGATACAGCTTAACTAT  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAATTTATTTTAAACAAAAAAGCTCCACAGATACAGCTTAACTAT  194

seq1  CTGCTCAGCAATCAGTTGTCCTTCTAAATCAACACATC-AAAAATGGTGC  247
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  CTGCTCAGCAATTAGTTGTCCTTCTAAATCAACACATCAAAAAATGGTGC  244

seq1  ACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGTGAATTTCTGAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGTGAATTTCTGAGT  294

seq1  TCGAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACA  344

seq1  CAGAGAAACTCTGTCTCGGAAAAAAAAAAAAAAAAAAGTTACCAATGGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACTCTGTCTCGGAAAAAAAAAAAAAAAAAAGTTACCAATGGAG  394

seq1  AAACAAAAGGGATCCACCAGAGGTGACTAGGGTGCCACCAGTGTGCCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGGGATCCACCAGAGGTGACTAGGGTGCCACCAGTGTGCCAGG  444

seq1  GGGGCTTGGTAAGGCAGAGGGGACATTAAGATAGCTCTTTATGTTCAGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTGGTAAGGCAGAGGGGACATTAAGATAGCTCTTTATGTTCAGAT  494

seq1  GCTGTGAAGAAAACAATAGTTGTTGTGCTCACTATCCATGTATGAGCAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAGAAAACAATAGTTGTTGTGCTCACTATCCATGTATGAGCAAA  544

seq1  TATATGACCCCAGTAAGGTTGAGGCAGAGTTTAAGATCCTTGGCTATGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACCCCAGTAAGGTTGAGGCAGAGTTTAAGATCCTTGGCTATGAG  594

seq1  TAGGGGGTTGAAGGACAGTCTGAACTACGTAAGACCCTGTTTCAAAAGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGTTGAAGGACAGTCTGAACTACGTAAGACCCTGTTTCAAAAGGA  644

seq1  AAAGCAGGACCCCCCCCCCAAAAAATCCAGAGGAAGATTAAGGGGAGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGACCCCCCCCCCAAAAAATCCAGAGGAAGATTAAGGGGAGAGG  694

seq1  ATATGTGCACCCCTCTCAAGTCCCTACAGTAGCAGACAGACACCTTGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCACCCCTCTCAAGTCCCTACAGTAGCAGACAGACACCTTGAAT  744

seq1  AACTGTGTCTAGTGGCGGGGACCTCAGCCAAGTTTGCCTGCATGAGTGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTCTAGTGGCGGGGACCTCAGCCAAGTTTGCCTGCATGAGTGTC  794

seq1  TCATTGTCCAGGACTACTGTTATTCAGTGCTGCTTTCTTGCATGTGATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCCAGGACTACTGTTATTCAGTGCTGCTTTCTTGCATGTGATCT  844

seq1  GCACAGCCCACAGCTGAGTGTGCTGGGCCTAACCTGCCTTCTCTATGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCCACAGCTGAGTGTGCTGGGCCTAACCTGCCTTCTCTATGGAA  894

seq1  AGGCCATGATAACCACAGTGAACATTTTCTTTCTTTTTAACAAGAATCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGATAACCACAGTGAACATTTTCTTTCTTTTTAACAAGAATCAC  944

seq1  CTAGGAAGAAGGAAATAGAATTC  970
      |||||||||||||||||||||||
seq2  CTAGGAAGAAGGAAATAGAATTC  967