BAC Information

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BAC

Clone NameB6Ng01-023J09
Chromosome11 (Build37)
Map Location 107,248,271 - 107,351,390
singlet/doubletdoublet
Overlap genePitpnc1, Psmd12
Upstream geneErn1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023J09.bB6Ng01-023J09.g
ACCDH855466DH855467
length7981,014
definitionDH855466|Mus musculus domesticus DNA, BAC clone: B6Ng01-023J09, 5' end.DH855467|Mus musculus domesticus DNA, BAC clone: B6Ng01-023J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,248,271 - 107,249,065)(107,350,355 - 107,351,390)
sequence
gaattcatttcctcttccttcggcaggacagcactgtagctggtcagaga
gagagagaccattgactccctcacagatgacatcggagcacagacaaggg
acaagatctggagtgattcgggctactgtagaaacagggccatgaggtgg
gaagctgcaccccccacacccactgctcctagtgacagtctgggccgttt
agctcagcactggccatttagaaggtgacaagaccttggggaatggagag
gtcacaggcaaaagagaatctgcccttctagaatacacgttcaagtgcag
gcgttcccttctttaaatgacataattgaatgtcttgttttagcaccttg
accttttatgatgactgaaaacctgtatttatcatgaagatactaaaact
atataaagcagagaggaaaaaaaatcactctgggtcttcctcttcctagc
cagccattattaatgttttagagaaattctttctagaattgttgctatgc
aaaaacagcaacaaccccagaacatattatctgcagaaataaaaccataa
tgtcttaattatttttctcatttaatactaccttctatttaatttgctaa
tagtttttcaaataaaaaaataaatcggcatattttttttaatgactata
taatatttcaccagaattggtataacccatttttttactgttagatttta
aagttggtattttgttgttattgatgagtctgtatttttgggagatttgt
ttgtctggttgcttgttttttgttttgttgtttcagtttggtggtttt
gaattccaggacagccagggttatacagagaaaccctgtctggaaaaacc
aaaacaaacaaacaaaaaaagcagagaatgaagacaatacagggcactag
accctttgaataaagtcatttctttccttccttaaccccagtagaaaagg
aaattgactggaatgtcagagtaacctatttagcccagtgggcagcctct
gatggggtccaggcactgtgaggtcattatcatgacttgacactttgagc
acagaaaatgtactataccctggtgacatccctggcctttctcagaatgc
ttagctgtaaagggaaagcacacacatccattctgtaagtatgtgctttt
agagtgtcctggtgactacagcattaaacccagggttctgtaggcaaggg
aaacaattatcactgagatcttagagtcccatctctggcaatttttcttg
gtcaaaccattttggtctagaaatttacctctaatcaaccattcactaag
aataaagccaataatttaaaagcagcagataatgcatttacttatttgaa
ttctaaacagaggccagccccggtggtgcatgtcttaatctcagtactcg
ggaggcagaggcaggtggatctctatgaattccaggtcagccaggggtca
cacagagaaaaccttgtctcaaaaaaccaaaactaaccaaccaaccaaag
aactagaaaaaaaaaaaaaaaaaaaaaaaaaactcacctcaaaatctaaa
cagaacacaatgttaaaaaataatctacaaaaaactaaggtcaatctttt
gatgtagtatttcttaaactttgttagcaggttagctttccaaaatagtt
ttcaggctctaagaacacattgtgcagtgtacatggctcactcttgttac
tagcactacaagcagtgattatcaaataactcttcacgggaaaatctatc
ttctcagcatttagttcagggacctaaatattaccgtgactcttgaagga
aggagcagcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107248271_107249065
seq2: B6Ng01-023J09.b_40_837

seq1  GAATTCATTTCCTCTTCCTTCGGCAGGACAGCACTGTAGCTGGTCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTCTTCCTTCGGCAGGACAGCACTGTAGCTGGTCAGAGA  50

seq1  GAGAGAGACCATTGACTCCCTCACAGATGACATCGGAGCACAGACAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACCATTGACTCCCTCACAGATGACATCGGAGCACAGACAAGGG  100

seq1  ACAAGATCTGGAGTGATTCGGGCTACTGTAGAAACAGGGCCATGAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCTGGAGTGATTCGGGCTACTGTAGAAACAGGGCCATGAGGTGG  150

seq1  GAAGCTGCACCCCCCACACCCACTGCTCCTAGTGACAGTCTGGGCCGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGCACCCCCCACACCCACTGCTCCTAGTGACAGTCTGGGCCGTTT  200

seq1  AGCTCAGCACTGGCCATTTAGAAGGTGACAAGACCTTGGGGAATGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCACTGGCCATTTAGAAGGTGACAAGACCTTGGGGAATGGAGAG  250

seq1  GTCACAGGCAAAAGAGAATCTGCCCTTCTAGAATACACGTTCAAGTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGCAAAAGAGAATCTGCCCTTCTAGAATACACGTTCAAGTGCAG  300

seq1  GCGTTCCCTTCTTTAAATGACATAATTGAATGTCTTGTTTTAGCACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCCCTTCTTTAAATGACATAATTGAATGTCTTGTTTTAGCACCTTG  350

seq1  ACCTTTTATGATGACTGAAAACCTGTATTTATCATGAAGATACTAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTATGATGACTGAAAACCTGTATTTATCATGAAGATACTAAAACT  400

seq1  ATATAAAGCAGAGAGGAAAAAAAATCACTCTGGGTCTTCCTCTTCCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGCAGAGAGGAAAAAAAATCACTCTGGGTCTTCCTCTTCCTAGC  450

seq1  CAGCCATTATTAATGTTTTAGAGAAATTCTTTCTAGAATTGTTGCTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTATTAATGTTTTAGAGAAATTCTTTCTAGAATTGTTGCTATGC  500

seq1  AAAAACAGCAACAACCCCAGAACATATTATCTGCAGAAATAAAACCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGCAACAACCCCAGAACATATTATCTGCAGAAATAAAACCATAA  550

seq1  TGTCTTAATTATTTTTCTCATTTAATACTACCTTCTATTTAATTTGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAATTATTTTTCTCATTTAATACTACCTTCTATTTAATTTGCTAA  600

seq1  TAGTTTTTCAAATAAAAAAATAAATCGGCATA-TCTTTTTAATGACTATA  649
      |||||||||||||||||||||||||||||||| | |||||||||||||||
seq2  TAGTTTTTCAAATAAAAAAATAAATCGGCATATTTTTTTTAATGACTATA  650

seq1  TAATATTTCACCAGAATTGGTATAACCCA-TTTTTTACTGTTAGATTTTA  698
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATATTTCACCAGAATTGGTATAACCCATTTTTTTACTGTTAGATTTTA  700

seq1  AAGTTGGTATTTTGTTGTTATTGATGAGTCTGTA-TTTTGGGAGATTTGT  747
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGTTGGTATTTTGTTGTTATTGATGAGTCTGTATTTTTGGGAGATTTGT  750

seq1  TTGTCTGGTTGCTTGTTTTTTGTTTTGTTGTTTCAGTTTGTTGGTTTT  795
      |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGTCTGGTTGCTTGTTTTTTGTTTTGTTGTTTCAGTTTGGTGGTTTT  798

seq1: chr11_107350355_107351390
seq2: B6Ng01-023J09.g_68_1081 (reverse)

seq1  AAGAGGCTGCCTCCATCCTTCAAGAGTTACAGGTAAAATGATTTAGGGAC  50
      |||| |||| |||| |||||||||||| || |||||    ||||| || |
seq2  AAGAAGCTG-CTCCTTCCTTCAAGAGTCAC-GGTAA---TATTTA-GGTC  44

seq1  CATGGAAACTGATATGCTGAGTTGGTAGTATTTTCCCGTGGAAGTAGATT  100
      | ||  |||| | ||||||||  | ||| |||||||||| |||| || ||
seq2  CCTG--AACT-AAATGCTGAGAAGATAG-ATTTTCCCGT-GAAG-AG-TT  87

seq1  ATTTTGATACTTCACTGCTTGTAGTTGCTACGTTAACAAGAGTGAG-CAT  149
      | |||||||  ||||||||||||| |||||   ||||||||||||| |||
seq2  A-TTTGATA-ATCACTGCTTGTAG-TGCTA--GTAACAAGAGTGAGCCAT  132

seq1  GTACACAGCACAGTGTGTTCTTGGAGCCCTGAAAACTGATTTTGCAAGCT  199
      |||||| ||||| ||||||||| ||| ||||||||||  ||| | |||||
seq2  GTACACTGCACAATGTGTTCTTAGAG-CCTGAAAACTATTTTGGAAAGCT  181

seq1  AACCTGCTAAACAAAGTTTGAAGAAATACTAGCATCAAAAGATTGACCTT  249
      |||||||| |||||||||| ||||||||||| ||||||||||||||||||
seq2  AACCTGCT-AACAAAGTTT-AAGAAATACTA-CATCAAAAGATTGACCTT  228

seq1  AG-TTTTTGTAGAATTATTTTTTGAACATTTGTGTTCTGTTTAGATTTTG  298
      || ||||||||| |||||||||| |||| |||||||||||||||||||||
seq2  AGTTTTTTGTAG-ATTATTTTTT-AACA-TTGTGTTCTGTTTAGATTTTG  275

seq1  AGGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGTTCTTTGGTTGG  348
      |||| |  ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGT-GAGTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGTTCTTTGGTTGG  324

seq1  TTGGTTGGTTTTGGTTTTTTGAGACAAGG-TTTCTCTGTGTGA-CCCTGG  396
      |||||| |||||||||||||||||||||| ||||||||||||| ||||||
seq2  TTGGTTAGTTTTGGTTTTTTGAGACAAGGTTTTCTCTGTGTGACCCCTGG  374

seq1  CTGACCTGGAATTCATAGAGATCCACCTGCCTCTGCCTCCCGAGTACTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGGAATTCATAGAGATCCACCTGCCTCTGCCTCCCGAGTACTGA  424

seq1  GATTAAGACATGCACCACCGGGGCTGGCCTCTGTTTAGAATTCAAATAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGACATGCACCACCGGGGCTGGCCTCTGTTTAGAATTCAAATAAG  474

seq1  TAAATGCATTATCTGCTGCTTTTAAATTATTGGCTTTATTCTTAGTGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCATTATCTGCTGCTTTTAAATTATTGGCTTTATTCTTAGTGAAT  524

seq1  GGTTGATTAGAGGTAAATTTCTAGACCAAAATGGTTTGACCAAGAAAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATTAGAGGTAAATTTCTAGACCAAAATGGTTTGACCAAGAAAAAT  574

seq1  TGCCAGAGATGGGACTCTAAGATCTCAGTGATAATTGTTTCCCTTGCCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGATGGGACTCTAAGATCTCAGTGATAATTGTTTCCCTTGCCTA  624

seq1  CAGAACCCTGGGTTTAATGCTGTAGTCACCAGGACACTCTAAAAGCACAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCTGGGTTTAATGCTGTAGTCACCAGGACACTCTAAAAGCACAT  674

seq1  ACTTACAGAATGGATGTGTGTGCTTTCCCTTTACAGCTAAGCATTCTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGAATGGATGTGTGTGCTTTCCCTTTACAGCTAAGCATTCTGAG  724

seq1  AAAGGCCAGGGATGTCACCAGGGTATAGTACATTTTCTGTGCTCAAAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGGGATGTCACCAGGGTATAGTACATTTTCTGTGCTCAAAGTG  774

seq1  TCAAGTCATGATAATGACCTCACAGTGCCTGGACCCCATCAGAGGCTGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCATGATAATGACCTCACAGTGCCTGGACCCCATCAGAGGCTGCC  824

seq1  CACTGGGCTAAATAGGTTACTCTGACATTCCAGTCAATTTCCTTTTCTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCTAAATAGGTTACTCTGACATTCCAGTCAATTTCCTTTTCTAC  874

seq1  TGGGGTTAAGGAAGGAAAGAAATGACTTTATTCAAAGGGTCTAGTGCCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTAAGGAAGGAAAGAAATGACTTTATTCAAAGGGTCTAGTGCCCT  924

seq1  GTATTGTCTTCATTCTCTGCTTTTTTTGTTTGTTTGTTTTGGTTTTTCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTCTTCATTCTCTGCTTTTTTTGTTTGTTTGTTTTGGTTTTTCCA  974

seq1  GACAGGGTTTCTCTGTATAACCCTGGCTGTCCTGGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTATAACCCTGGCTGTCCTGGAATTC  1014