BAC Information

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BAC

Clone NameB6Ng01-023O05
Chromosome1 (Build37)11 (Build37)
Map Location 61,720,736 - 61,721,25210,675,006 - 10,675,788
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023O05.bB6Ng01-023O05.g
ACCDH855683DH855684
length517782
definitionDH855683|Mus musculus domesticus DNA, BAC clone: B6Ng01-023O05, 5' end.DH855684|Mus musculus domesticus DNA, BAC clone: B6Ng01-023O05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,720,736 - 61,721,252)(10,675,006 - 10,675,788)
sequence
gaattcctgatctttccaacacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttgtattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtatcgtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggact
gaattcaacctgtaatcttgggaggaaaaatcaacagcacagatgagaaa
ctcaacaaaactactgagaaaatcaacaacatggattaaaaagtcaatag
catgaatgagatattcatcaagaaaatgggtattttggaaaaaatagaaa
ttttggaaattatcatctcaataatttaaataaaaaccaagggaagccat
cacaagtatagttgatcaaatagaagaaaaatatcagtgtggaagagaag
tgaaaaaattacattaaagaatcagtgaagaacattattatgatgttcag
gaattccaaatcctggctaagggattaagtgtaagagtcaaagtaaagga
gctgagaaaaggtctacagacatagacactctattcaacacaataatagc
agataacttaccaaactagagaaaggaaaagacaaacacacacgagacac
taagaaccccaaccatatactaaggagcagcaaatgacaacaaaacaata
taaaaaatgtgaggggaaacaaaaggcaaatacatcagcataatattaag
tctatcttcagcaaactcaaaagtcagagaaccataggctgttatattgt
aaaccaatcatgattgctacattcagcaaaggcacctttgtttatgagca
ctaaacaagaagctcataaagtactttgaagaagactggagagagaaaga
aaaaaagagtttttaatcatgtgcaggaaagaatatatatatatatatat
atatatatatatatatatatatatatatatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61720736_61721252
seq2: B6Ng01-023O05.b_45_561 (reverse)

seq1  AGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAAC  50

seq1  CAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCT  100

seq1  TCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAA  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAA  150

seq1  GTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGAT  200
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGTACGATACCCAACTCATTTTATGAAGCCACTATTACTCTGAT  200

seq1  ACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTT  250

seq1  CTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGA  300

seq1  ATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTAT  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTAT  350

seq1  TCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCC  400

seq1  ATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGAT  450

seq1  GCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTGTT  500

seq1  GGAAAGATCAGGAATTC  517
      |||||||||||||||||
seq2  GGAAAGATCAGGAATTC  517

seq1: chr11_10675006_10675788
seq2: B6Ng01-023O05.g_69_850 (reverse)

seq1  ACATATATATATATATATATATATATATATATATATATATATATATATAT  50
        | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  --ACATATATATATATATATATATATATATATATATATATATATATATAT  48

seq1  ATTCTTTCCTGCACATGATT-AAAACTCTTTTTTTCTTTCTCTCTCCAGT  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTCTTTCCTGCACATGATTAAAAACTCTTTTTTTCTTTCTCTCTCCAGT  98

seq1  CTTCTTCAAAGTACTTTATGAGCTTCTTGTTTAGTGCTCATAAACAAAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAAGTACTTTATGAGCTTCTTGTTTAGTGCTCATAAACAAAGG  148

seq1  TGCCTTTGCTGAATGTAGCAATCATGATTGGTTTACAATATAACAGCCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGCTGAATGTAGCAATCATGATTGGTTTACAATATAACAGCCTA  198

seq1  TGGTTCTCTGACTTTTGAGTTTGCTGAAGATAGACTTAATATTATGCTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCTGACTTTTGAGTTTGCTGAAGATAGACTTAATATTATGCTGA  248

seq1  TGTATTTGCCTTTTGTTTCCCCTCACATTTTTTATATTGTTTTGTTGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGCCTTTTGTTTCCCCTCACATTTTTTATATTGTTTTGTTGTCA  298

seq1  TTTGCTGCTCCTTAGTATATGGTTGGGGTTCTTAGTGTCTCGTGTGTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCTCCTTAGTATATGGTTGGGGTTCTTAGTGTCTCGTGTGTGTT  348

seq1  TGTCTTTTCCTTTCTCTAGTTTGGTAAGTTATCTGCTATTATTGTGTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTCCTTTCTCTAGTTTGGTAAGTTATCTGCTATTATTGTGTTGA  398

seq1  ATAGAGTGTCTATGTCTGTAGACCTTTTCTCAGCTCCTTTACTTTGACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGTCTATGTCTGTAGACCTTTTCTCAGCTCCTTTACTTTGACTC  448

seq1  TTACACTTAATCCCTTAGCCAGGATTTGGAATTCCTGAACATCATAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTAATCCCTTAGCCAGGATTTGGAATTCCTGAACATCATAATAA  498

seq1  TGTTCTTCACTGATTCTTTAATGTAATTTTTTCACTTCTCTTCCACACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCACTGATTCTTTAATGTAATTTTTTCACTTCTCTTCCACACTG  548

seq1  ATATTTTTCTTCTATTTGATCAACTATACTTGTGATGGCTTCCCTTGGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCTTCTATTTGATCAACTATACTTGTGATGGCTTCCCTTGGTT  598

seq1  TTTATTTAAATTATTGAGATGATAATTTCCAAAATTTCTATTTTTTCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAATTATTGAGATGATAATTTCCAAAATTTCTATTTTTTCCAA  648

seq1  AATACCCATTTTCTTGATGAATATCTCATTCATGCTATTGACTTTTTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCATTTTCTTGATGAATATCTCATTCATGCTATTGACTTTTTAAT  698

seq1  CCATGTTGTTGATTTTCTCAGTAGTTTTGTTGAGTTTCTCATCTGTGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGTTGATTTTCTCAGTAGTTTTGTTGAGTTTCTCATCTGTGCTG  748

seq1  TTGATTTTTCCTCCCAAGATTACAGGTTGAATTC  783
      ||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTCCTCCCAAGATTACAGGTTGAATTC  782