BAC Information

Click to search

BAC

Clone NameB6Ng01-024J12
Chromosome11 (Build37)
Map Location 117,520,600 - 117,623,167
singlet/doubletdoublet
Overlap geneTnrc6c
Upstream geneOTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
Downstream geneTmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024J12.bB6Ng01-024J12.g
ACCDH856179DH856180
length1,1241,068
definitionDH856179|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J12, 5' end.DH856180|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,622,034 - 117,623,167)(117,520,600 - 117,521,675)
sequence
gaattctctttactgtttaggattagctaaaggaagggcagagacacctc
agtgcaaagttagaagcaaataacaacaatgagaacatttgaccaatgcc
aaaaacaaaaaacaaaacaaacaaaaacaaaaacccccaaaaaaaccaaa
accaaaagcatatactgactagaagggaaacccacagttaagtccctcac
acactcaagtgcgcacgcacgcacaggaagccctgcctgtgcaagaacac
actcacacacactcttctgcacaccgcaccacacaagcacacaagcacac
gcactcacgcatacacgcacatgtaggctatgaacgtagacatttcctag
agcctgtttctgtgcacggatgtcaacgtggaagtgttcacatttcggta
ttggcctgctgggttcaagtatttgcatgtttgatatgtctttttttttt
taacttttaaaaaatatttttttgggataaaaaaaaatgacatgaaaagg
taacgaaacgagggtaatgtgcgcaggcgatcggggggacagagcactgg
ccacacgcctcagctctgtgcccgcacaacgcagcccagccgcctgtccc
gcctaccgcctctgtaatgtgcataatcgtcacaggctcactttaaatag
gcttcaagtctccccccaccccaccataaaataaccctttccagcccaca
atctgaaaagtgcccttcatgatagaactattctaaagcagcttttatac
ttaaaactcaaaatggcagcgcactgtacaaacctaagacgacatgaaat
aaaaagctatgagagacgtcctgtccttagcacatgacactgaccaacct
cagcccgcactgtcttcaacagttcacaggggccgaggccaaagttcatc
ttcagactggacagaggtactccaaggggcagcttgtccgtcagctggag
ctcgagcctgccctggcatggtcagctctcttccccagtgaccgtggccc
ctagatggactcgccgctgagcagtcccagcagcatagtgttgagaggcg
tggggctgctatcacttctgtgtcctagcactgggctggcccacaggctg
tgggagacttggggacccacccca
gaattctgtggctatgatatagttgggattaagcgaggataagaatgtag
cttctgcagtatgtgtctcttacaggccaatgaatttaaatgctttttct
aggaatttgaatatggagttgtcaccatcacacacacccctcccttggcc
tatttgttgcaacacatctttgctgttataaacacatgagctcacctggc
catgtatagtcacaaggccgaggagccctttgggagatgcttccctagag
agcaggctgagttggtctttccattttgcttcttcataatccacctttct
gccacaacagttttttaaattgtcagttctctgtcattgaagctggtagc
cgtctttttttttttttttttgtataataaatgatcccccgggagccttc
agtcttccgtctttagacctctggcagacaatattctttttttttttttt
tttttcctcctctctccggccccactcgctctggcccaaagatcaatttt
tttagtatatgtaagtacactataactgtcttcagacacaccagaagagg
gtgttagatctcattacagatggttgtgagccaccatgaggttgctggga
tttgaacgcaggacctttggaagagcagtcagtgcttttaaccgctgagc
catctctccagcccgacaatattcttaatatattgatgctttcttcctca
gaaggcttgagctgtagacctacagtatcacagcatcaagtcaggttatt
ctcagcagccagaaagtatccctggtgaaggcctttgccatcatgcacag
tcttttgacaagactgacaccaaagcacattcatggcacagggttcttag
ggatgtatgcctccttctgtgtgggttgtcagatgaaccaagacaaaaat
ctttcacatcagactcacttgcttggctgagcctggcaaaagattttgtg
tacttttcttcccaaagataattctttttaataatctttgagcaaaagca
agaaaatccaagttaaattagcaagcagaattagcctgattgcagtccga
gctgggagactcaggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_117622034_117623167
seq2: B6Ng01-024J12.b_49_1172 (reverse)

seq1  TGGGGTGGGGTCCCCCAGTACTCCAGCAGCCTGTGGGGCCCGCCCAGTGC  50
      |||||| |||||||| ||| ||||  |||||||| ||||| |||||||||
seq2  TGGGGT-GGGTCCCCAAGT-CTCCCACAGCCTGT-GGGCCAGCCCAGTGC  47

seq1  TGAGGACGCCAGAGTGATCGGCAGCCCCACGCCTCTCAACACTCTGCTGC  100
      | ||||| |   ||||||  ||||||||||||||||||||||| ||||| 
seq2  T-AGGACACAGAAGTGAT-AGCAGCCCCACGCCTCTCAACACTATGCTG-  94

seq1  CTGGGGACCTGCTCAGCGGCGAGTCCATCTAGGGGCCACGGTCACTGGGG  150
      |||||   |||||||||||||||||||||||||||||||||||||| |||
seq2  CTGGG--ACTGCTCAGCGGCGAGTCCATCTAGGGGCCACGGTCACT-GGG  141

seq1  GAAGAGAGCTGACCATGCCAGGGCCGGCTCCGAAGCTCCAGCTGACGGAC  200
      |||||||||||||||||||||||| |||||   |||||||||||||||||
seq2  GAAGAGAGCTGACCATGCCAGGGCAGGCTC--GAGCTCCAGCTGACGGAC  189

seq1  AAGCTGCCCCTTGGAGTACCTCTGTCCAGTCTGAAGATGAACCTTGGCCT  250
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGCTGCCCCTTGGAGTACCTCTGTCCAGTCTGAAGATGAACTTTGGCCT  239

seq1  CGGCCCCTGTGAACTGTTGAAGACAGTGCGGGCTGAGGTTGGTCAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCCTGTGAACTGTTGAAGACAGTGCGGGCTGAGGTTGGTCAGTGTC  289

seq1  ATGTGCTAAGGACAGGACGTCTCTCATAGCTTTTTATTTCATGTCGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAAGGACAGGACGTCTCTCATAGCTTTTTATTTCATGTCGTCTT  339

seq1  AGGTTTGTACAGTGCGCTGCCATTTTGAGTTTTAAGTATAAAAGCTGC-T  399
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGTTTGTACAGTGCGCTGCCATTTTGAGTTTTAAGTATAAAAGCTGCTT  389

seq1  TAGAATAGTTCTATCATGAAGGGCACTTTTCAGATTGTGGGCTGGAAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGTTCTATCATGAAGGGCACTTTTCAGATTGTGGGCTGGAAAGG  439

seq1  GTTATTTTATGGTGGGGTGGGGGGAGACTTGAAGCCTATTTAAAGTGAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTATGGTGGGGTGGGGGGAGACTTGAAGCCTATTTAAAGTGAGC  489

seq1  CTGTGACGATTATGCACATTACAGAGGCGGTAGGCGGGACAGGCGGCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACGATTATGCACATTACAGAGGCGGTAGGCGGGACAGGCGGCTGG  539

seq1  GCTGCGTTGTGCGGGCACAGAGCTGAGGCGTGTGGCCAGTGCTCTGTCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGTTGTGCGGGCACAGAGCTGAGGCGTGTGGCCAGTGCTCTGTCCC  589

seq1  CCCGATCGCCTGCGCACATTACCCTCGTTTCGTTACCTTTTCATGTCATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATCGCCTGCGCACATTACCCTCGTTTCGTTACCTTTTCATGTCATT  639

seq1  TTTTTTTATCCCAAAAAAATATTTTTTAAAAGTTAAAAAAAAAAAGACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATCCCAAAAAAATATTTTTTAAAAGTTAAAAAAAAAAAGACAT  689

seq1  ATCAAACATGCAAATACTTGAACCCAGCAGGCCAATACCGAAATGTGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACATGCAAATACTTGAACCCAGCAGGCCAATACCGAAATGTGAAC  739

seq1  ACTTCCACGTTGACATCCGTGCACAGAAACAGGCTCTAGGAAATGTCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACGTTGACATCCGTGCACAGAAACAGGCTCTAGGAAATGTCTAC  789

seq1  GTTCATAGCCTACATGTGCGTGTATGCGTGAGTGCGTGTGCTTGTGTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCCTACATGTGCGTGTATGCGTGAGTGCGTGTGCTTGTGTGCT  839

seq1  TGTGTGGTGCGGTGTGCAGAAGAGTGTGTGTGAGTGTGTTCTTGCACAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTGCGGTGTGCAGAAGAGTGTGTGTGAGTGTGTTCTTGCACAGG  889

seq1  CAGGGCTTCCTGTGCGTGCGTGCGCACTTGAGTGTGTGAGGGACTTAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTCCTGTGCGTGCGTGCGCACTTGAGTGTGTGAGGGACTTAACT  939

seq1  GTGGGTTTCCCTTCTAGTCAGTATATGCTTTTGGTTTTGGTTTTTTTGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTCCCTTCTAGTCAGTATATGCTTTTGGTTTTGGTTTTTTTGGG  989

seq1  GGTTTTTGTTTTTGTTTGTTTTGTTTTTTGTTTTTGGCATTGGTCAAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGTTTTTGTTTGTTTTGTTTTTTGTTTTTGGCATTGGTCAAATG  1039

seq1  TTCTCATTGTTGTTATTTGCTTCTAACTTTGCACTGAGGTGTCTCTGCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTGTTGTTATTTGCTTCTAACTTTGCACTGAGGTGTCTCTGCCC  1089

seq1  TTCCTTTAGCTAATCCTAAACAGTAAAGAGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAGCTAATCCTAAACAGTAAAGAGAATTC  1124

seq1: chr11_117520600_117521675
seq2: B6Ng01-024J12.g_68_1135

seq1  GAATTCTGTGGCTATGATATAGTTGGGATTAAGCGAGGATAAGAATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCTATGATATAGTTGGGATTAAGCGAGGATAAGAATGTAG  50

seq1  CTTCTGCAGTATGTGTCTCTTACAGGCCAATGAATTTAAATGCTTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAGTATGTGTCTCTTACAGGCCAATGAATTTAAATGCTTTTTCT  100

seq1  AGGAATTTGAATATGGAGTTGTCACCATCACACACACCCCTCCCTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTGAATATGGAGTTGTCACCATCACACACACCCCTCCCTTGGCC  150

seq1  TATTTGTTGCAACACATCTTTGCTGTTATAAACACATGAGCTCACCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGCAACACATCTTTGCTGTTATAAACACATGAGCTCACCTGGC  200

seq1  CATGTATAGTCACAAGGCCGAGGAGCCCTTTGGGAGATGCTTCCCTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATAGTCACAAGGCCGAGGAGCCCTTTGGGAGATGCTTCCCTAGAG  250

seq1  AGCAGGCTGAGTTGGTCTTTCCATTTTGCTTCTTCATAATCCACCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTGAGTTGGTCTTTCCATTTTGCTTCTTCATAATCCACCTTTCT  300

seq1  GCCACAACAGTTTTTTAAATTGTCAGTTCTCTGTCATTGAAGCTGGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACAGTTTTTTAAATTGTCAGTTCTCTGTCATTGAAGCTGGTAGC  350

seq1  CGTCTTTTTTTTTTTTTTTTTGTATAATAAATGATCCCCCGGGAGCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTTTTTTTTTTTTTTTGTATAATAAATGATCCCCCGGGAGCCTTC  400

seq1  AGTCTTCCGTCTTTAGACCTCTGGCAGACAATATTCTTTTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCGTCTTTAGACCTCTGGCAGACAATATTCTTTTTTTTTTTTTT  450

seq1  TTTTTCCTCCTCTCTCCGGCCCCACTCGCTCTGGCCCAAAGATCAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCCTCTCTCCGGCCCCACTCGCTCTGGCCCAAAGATCAATTTT  500

seq1  TTTAGTATATGTAAGTACACTATAACTGTCTTCAGACACACCAGAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATATGTAAGTACACTATAACTGTCTTCAGACACACCAGAAGAGG  550

seq1  GTGTTAGATCTCATTACAGATGGTTGTGAGCCACCATGAGGTTGCTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGATCTCATTACAGATGGTTGTGAGCCACCATGAGGTTGCTGGGA  600

seq1  TTTGAACGCAGGACCTTTGGAAGAGCAGTCAGTGCTTTTAACCGCTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACGCAGGACCTTTGGAAGAGCAGTCAGTGCTTTTAACCGCTGAGC  650

seq1  CATCTCTCCAGCCCGACAATATTCTTAATATATTGATGCTTTCTTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCCCGACAATATTCTTAATATATTGATGCTTTCTTCCTCA  700

seq1  GAAGGCTTGAGCTGTAGACCTACAGTATCACAGCATCAAGTCAGGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTGAGCTGTAGACCTACAGTATCACAGCATCAAGTCAGGTTATT  750

seq1  CTCAGCAGCCAGAAAAGTATCCCTGGTGAAGGCCTTTGCCATCATGCACA  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGCCAG-AAAGTATCCCTGGTGAAGGCCTTTGCCATCATGCACA  799

seq1  GTCTTTTGACAAGACTGACACCAAAGCACATTCATGGCACAGTGGTTCTT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCTTTTGACAAGACTGACACCAAAGCACATTCATGGCACAG-GGTTCTT  848

seq1  AGGGATGTATGCCTCCTTCTGTGTGTGTTGTCAGATG-AGCAAGACAAAA  899
      ||||||||||||||||||||||||| ||||||||||| | ||||||||||
seq2  AGGGATGTATGCCTCCTTCTGTGTGGGTTGTCAGATGAACCAAGACAAAA  898

seq1  ATCTTTCACATCAGAACTCACTTGCTTGGCTTGAGCCTGGC-AAAGATAT  948
      |||||||||||||| ||||||||||||||| |||||||||| |||||| |
seq2  ATCTTTCACATCAG-ACTCACTTGCTTGGC-TGAGCCTGGCAAAAGATTT  946

seq1  TGTGTACTTTTTCTTCCCAAAGATAATTTCTTTTTAATTATTCTTTGAGC  998
      ||||||| |||||||||||||||||| |||||||||| || |||||||||
seq2  TGTGTAC-TTTTCTTCCCAAAGATAA-TTCTTTTTAA-TAATCTTTGAGC  993

seq1  AAAAGCAAGAGAATCCAAGTTAAATTAGCAAGCAGGAATTAGGCTAGATT  1048
      |||||||||| ||||||||||||||||||||||| ||||||| || || |
seq2  AAAAGCAAGAAAATCCAAGTTAAATTAGCAAGCA-GAATTAGCCT-GA-T  1040

seq1  TGCAGTTCGGAGCTGGTAG-CTCAGGCCC  1076
      ||||| || ||||||| || |||||||||
seq2  TGCAG-TCCGAGCTGGGAGACTCAGGCCC  1068