BAC Information

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BAC

Clone NameB6Ng01-025M02
Chromosome11 (Build37)
Map Location 72,362,355 - 72,483,189
singlet/doubletdoublet
Overlap gene9830002I17Rik, LOC432577, Ube2g1
Upstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a
Downstream geneAnkfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025M02.bB6Ng01-025M02.g
ACCDH856995DH856996
length1,105570
definitionDH856995|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M02, 5' end.DH856996|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,482,080 - 72,483,189)(72,362,355 - 72,362,929)
sequence
gaattcttatgctaaaaagttgccattacccctctaaattatttataagt
aattgtcaaacttacttaatagtgttgccctaaaattttaaagcagatgt
ttttctatttttctaaaagttcccaaaataattatgctagttctccattt
tcttaatggattcctctactttacctaaggaccatctacctgctcttctc
ccaccctagaaaacaccttgcttagtggcagcaaatctgtgagtatacaa
actttagaagtgaagttagcacaaaagaactaaaaaatgcatagggtaaa
aataacaaagtagatagactgtatttattatttttcaaacatagaaagat
gtgactatagggaagagaaaaacattaaagtagcagtgaagtaaaaatat
ttctccatgtacaaagtattaaaacaattaacatgatgttaaagagttat
ataagcaactgctgaatatttgaaaaaccaaggtcatatttctggcacaa
aacctccttttactatttttgtaaattaaatcacacaagtcttaactggg
tatggcacatgcctataatttagcactgaaaagtgtgaggcaggaggcct
attcaatttaaagtaacccaaactacatatcaagaacccttttcgatttt
tttaaaaaactatactgggactccaagtctgtcagtcgtccaacacttgc
ctagagatcttggtcctttctttccaaacattacacacaaaagaagttac
ttggaggaaggggcttgggtcaagatagggtttctctgtatagcactggc
tatcctagaattctctctttagaccatgctggcctcaaattcagagatca
gcttgtctctgccttccaatgctggtattaaagccatgcaccaccacacc
tggctaagaaaatcttattcttggcagcactagaaaattcattattggga
tacaagattattaaaaggaaaaaaatgctaggtgaagatgggtaaaatag
catgtcttagttaaggttttactgctgtgaacaggccacatgaccaagca
gcttataaaggcaacattaattgggggctggcctacaggtttaaagggtc
agtcc
aaaagcaacctgatcttacttaagaccttgtctcaaaaacaaacaaacaa
agaaaagaggctgggtggtttcaccccagtaagtgatctgcagcctctcc
tgaatggtcccaagccagaacagggcacaatgtgtgtgggggcagcggtg
tgagtgggtggatgggactgtgctctgcagcaaaggcgttgggttcagga
tggagctgcaggcaaggttacggagggcagagcagccctctacatcagtt
attagagtgcttatccagcatgcacaaagaccctgggttcaatccctaga
acttcataaagcattgtggtggcaagcctgtaatcccggccctaagaagg
tgaaggcaagcatatcagcagttcatgattattctcagttacatagcgag
tttgaatctagcctgagctccatgaggccctgcctcaaaaaagaaatgaa
ggctgacaagatggcttagcctgtgaaggcgcttgctgaacaagctttgg
aaaccttagttcaatatctgaagctcaaataaaagtgaaggagcatgcac
acacaggcacacacacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72482080_72483189
seq2: B6Ng01-025M02.b_48_1152 (reverse)

seq1  GGACTGAACCTCTAAACCTGTAAGCCAGCCCCAATTAAATGTTGCCTTTT  50
      ||||||| ||| |||||||||| ||||||||| | | ||||||||| |||
seq2  GGACTGACCCTTTAAACCTGTAGGCCAGCCCCCAATTAATGTTGCC-TTT  49

seq1  ATAAGACTTGCTTTGGTCATGGTGCCTGTTCACAGCAGTAAAACCCTAAC  100
      |||||   ||| |||||||||  |||||||||||||||||||||| ||||
seq2  ATAAG--CTGC-TTGGTCATGTGGCCTGTTCACAGCAGTAAAACCTTAAC  96

seq1  TAAGACATGCTATTTTACCCATCTTCACCTAGCATTTTTTTTCCTTTTAT  150
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  TAAGACATGCTATTTTACCCATCTTCACCTAGCA-TTTTTTTCCTTTTAA  145

seq1  TAATCTTGTAT-CCAATATTGAATTTTTCTAGTGCTGCCAAGAAT-AGAT  198
      ||||||||||| |||||| |||| ||||||||||||||||||||| ||||
seq2  TAATCTTGTATCCCAATAATGAA-TTTTCTAGTGCTGCCAAGAATAAGAT  194

seq1  TTTCTTAGCCAGGTGTGGTGGTGCATGGCTTTAATACCAGCATTTGGAAG  248
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTCTTAGCCAGGTGTGGTGGTGCATGGCTTTAATACCAGCA-TTGGAAG  243

seq1  GCAGAGACAAGCTGATCTCTGAATTTGAGGCCAGCATGGTCTAAAGAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACAAGCTGATCTCTGAATTTGAGGCCAGCATGGTCTAAAGAGAG  293

seq1  AATTCTAGGATAGCCAGTGCTATACAGAGAAACCCTATCTTGACCCAAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGATAGCCAGTGCTATACAGAGAAACCCTATCTTGACCCAAGC  343

seq1  CCCTTCCTCCAAGTAACTTCTTTTGTGTGTAATGTTTGGAAAGAAAGGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCCAAGTAACTTCTTTTGTGTGTAATGTTTGGAAAGAAAGGAC  393

seq1  CAAGATCTCTAGGCAAGTGTTGGACGACTGACAGACTTGGAGTCCCAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTCTAGGCAAGTGTTGGACGACTGACAGACTTGGAGTCCCAGTA  443

seq1  TAGTTTTTTAAAAAAATCGAAAAGGGTTCTTGATATGTAGTTTGGGTTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTAAAAAAATCGAAAAGGGTTCTTGATATGTAGTTTGGGTTAC  493

seq1  TTTAAATTGAATAGGCCTCCTGCCTCACACTTTTCAGTGCTAAATTATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGAATAGGCCTCCTGCCTCACACTTTTCAGTGCTAAATTATAG  543

seq1  GCATGTGCCATACCCAGTTAAGACTTGTGTGATTTAATTTACAAAAATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCATACCCAGTTAAGACTTGTGTGATTTAATTTACAAAAATAG  593

seq1  TAAAAGGAGGTTTTGTGCCAGAAATATGACCTTGGTTTTTCAAATATTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGGTTTTGTGCCAGAAATATGACCTTGGTTTTTCAAATATTCA  643

seq1  GCAGTTGCTTATATAACTCTTTAACATCATGTTAATTGTTTTAATACTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCTTATATAACTCTTTAACATCATGTTAATTGTTTTAATACTTT  693

seq1  GTACATGGAGAAATATTTTTACTTCACTGCTACTTTAATGTTTTTCTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGAGAAATATTTTTACTTCACTGCTACTTTAATGTTTTTCTCTT  743

seq1  CCCTATAGTCACATCTTTCTATGTTTGAAAAATAATAAATACAGTCTATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGTCACATCTTTCTATGTTTGAAAAATAATAAATACAGTCTATC  793

seq1  TACTTTGTTATTTTTACCCTATGCATTTTTTAGTTCTTTTGTGCTAACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTATTTTTACCCTATGCATTTTTTAGTTCTTTTGTGCTAACTT  843

seq1  CACTTCTAAAGTTTGTATACTCACAGATTTGCTGCCACTAAGCAAGGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTAAAGTTTGTATACTCACAGATTTGCTGCCACTAAGCAAGGTGT  893

seq1  TTTCTAGGGTGGGAGAAGAGCAGGTAGATGGTCCTTAGGTAAAGTAGAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGGTGGGAGAAGAGCAGGTAGATGGTCCTTAGGTAAAGTAGAGG  943

seq1  AATCCATTAAGAAAATGGAGAACTAGCATAATTATTTTGGGAACTTTTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTAAGAAAATGGAGAACTAGCATAATTATTTTGGGAACTTTTAG  993

seq1  AAAAATAGAAAAACATCTGCTTTAAAATTTTAGGGCAACACTATTAAGTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAAAAACATCTGCTTTAAAATTTTAGGGCAACACTATTAAGTA  1043

seq1  AGTTTGACAATTACTTATAAATAATTTAGAGGGGTAATGGCAACTTTTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGACAATTACTTATAAATAATTTAGAGGGGTAATGGCAACTTTTTA  1093

seq1  GCATAAGAATTC  1110
      ||||||||||||
seq2  GCATAAGAATTC  1105

seq1: chr11_72362355_72362929
seq2: B6Ng01-025M02.g_66_641

seq1  GAATTCAAAAGCAACCTGATCTTACTTAAGACCTTGTCTCAAAAACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCAACCTGATCTTACTTAAGACCTTGTCTCAAAAACAAAC  50

seq1  AAACAAAGAAAAGAGGCTGGGTGGTTTCACCCCAGTAAGTGATCTGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAAAGAGGCTGGGTGGTTTCACCCCAGTAAGTGATCTGCAGC  100

seq1  CTCTCCTGAATGGTCCCAAGCCAGAACAGGGCACAATGTGTGTGGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGAATGGTCCCAAGCCAGAACAGGGCACAATGTGTGTGGGGGCA  150

seq1  GCGGTGTGAGTGGGTGGATGGGACTGTGCTCTGCAGCAAAGGCGTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGTGAGTGGGTGGATGGGACTGTGCTCTGCAGCAAAGGCGTTGGGT  200

seq1  TCAGGATGGAGCTGCAGGCAAGGTTACGGAGGGCAGAGCAGCCCTCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGGAGCTGCAGGCAAGGTTACGGAGGGCAGAGCAGCCCTCTACA  250

seq1  TCAGTTATTAGAGTGCTTATCCAGCATGCACAAAGACCCTGGGTTCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATTAGAGTGCTTATCCAGCATGCACAAAGACCCTGGGTTCAATC  300

seq1  CCTAGAACTTCATAAAGCATTGTGGTGGCAAGCCTGTAATCCCGGCCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTTCATAAAGCATTGTGGTGGCAAGCCTGTAATCCCGGCCCTA  350

seq1  AGAAGGTGAAGGCAAGCATATCAGCAGTTCATGATTATTCTCAGTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGAAGGCAAGCATATCAGCAGTTCATGATTATTCTCAGTTACAT  400

seq1  AGCGAGTTTGAATCTAGCCTGAGCTCCATGAGGCCCTGCCTCAAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGTTTGAATCTAGCCTGAGCTCCATGAGGCCCTGCCTCAAAAAAGA  450

seq1  AATGAAGGCTGACAAGATGGCTTAGCCTGTGAAGGCGCTTGCTGAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCTGACAAGATGGCTTAGCCTGTGAAGGCGCTTGCTGAACAAG  500

seq1  C-TTGGAAACCTTAGTTCAATATCTGAAGCTCAAATAAAAGTGAAGGAGC  549
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAACCTTAGTTCAATATCTGAAGCTCAAATAAAAGTGAAGGAGC  550

seq1  ATGCACACACAGGCACACACACATAC  575
      ||||||||||||||||||||||||||
seq2  ATGCACACACAGGCACACACACATAC  576