BAC Information

Click to search

BAC

Clone NameB6Ng01-026J11
Chromosome11 (Build37)
Map Location 52,389,614 - 52,413,513
singlet/doubletdoublet
Overlap genenone
Upstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026J11.bB6Ng01-026J11.g
ACCDH857592DH857593
length1,0641,082
definitionDH857592|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J11, 5' end.DH857593|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,412,427 - 52,413,513)(52,389,614 - 52,390,705)
sequence
gaattccacagatgcttataaacacttccattacttctgaagttttattt
atggtttttgttaaacctttactctgaagtttgccattttaaacactccc
tgactgaaagagatttatatgggtctctcacactgaagccacctgaaatg
gacagagccgaaatcaatttatagggcttcaagagcggttgacgattcat
ttttattgagagagggtttctctcaggaaggggagagaaaacattaccgc
ctccagaacacatccactcctttaacagtctgactgttgctaggtaccgt
ctctgtctccccgtcaatacaagcactatgaaactgtatcaaagcatgct
gtttgccagactagagatgaaaataaaggtttcagaccccgcagaagagg
tcctggcttctcggggtgctcaggagaaatgagcgctacaactgaacctg
ttgattcaaagggaatcaggaaccagcaatgacaagagttgggagcctca
caaatcctttgagtatcctaaagcccccagccgaagggagcaacaactca
catattttcaggcctgtcaaataaattaggaactctcttcctttgaagat
caatggtatagagatgactttgaactcttaatatcaggcattagcaacat
aatgttgggttttattaagaatgaaaggaatttaccaattttctcccagc
gatcctctctggactctgcacggaagctaatcactagataattgttcaat
ggctcttctggtccattcaaatctattgaattgtttagagagggaaaggc
agaagtccccttgagggaccaattaccaaaatgcagggacctgcaacttg
gcagaacacatttttagaaaaaaaaaaaataaaaaaaaaaacacacaaaa
gagcagctgttaagaagactggtaccacagctagcagagctgtcagaaca
atatagcacaggctgcgtgctaaatctaggacatgtcttttctcatactc
gcagtatagttcaagataagtactactgagtcctttctcccaaactcacc
ctgtaatacaacag
gaattcctgaggtggtgagagagataaatatttgactatattcagaagtt
gaacctcagtaaagacctcatatttacgctgtaaaaatcagatgttcatg
gaatagagggacagctcagttggtaaagtgcctgtcatacaagcacaagg
atgtgagttcagatacgtagcacttgtgcaaaaagccaggcaccatggtg
ctagcctgtgatcgcaatgcttgggaggtagagacaggaggatcccaggg
gccagccagcccagctgaagcaaagagcttcatgtactgtgagagaccct
gtctcaaaaaagtaaggcagagagagagagagagagagagagagagagaa
aaaagagaagacttctaacattgacctctggccttacacacatacgtatt
catgcacttgcacgtgcacacacacacacacacacacacacacacacaca
cacacacacacatgctgagaggttagtatataacctagcaaggattggtt
tgcccccacccagggatccatcccataatcagccaccaaacgcagacact
attgaatatgccagcaagattttgctgaaaggaccctgatatagctattt
cttgtgaggctatgctagtgcctggcaaatacagaagtggatgctcacag
tcatctattggttggaacacagggcccccaatggaggagccagagaaagt
acccaaagagctgaaggggtctgtaaccctataggtggaacaacaataaa
aataaataaataaaggattggtttgctactgtgtggtaggaaagctcttt
agcttagggaatttgtagtgtcttgtgggtggagacaaagatgggaacat
ctgatgtcctagttgccatgaataaatattctgagaaagcacttatttgg
ctcagttctgtccatcattgtggggatgtcgaagcatagatcttgaagca
gagagcagggctaatgcatgcatgctagtgctcagcttgccccctcactt
tatacatctcagatgtataagcttattctttatcgctcaaggagtggtcc
caccatagttaaaatgggtgtcctcaacatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_52412427_52413513
seq2: B6Ng01-026J11.b_45_1108 (reverse)

seq1  CTGTGTGTATTACAAGGGTGAGTTTGGGAGAGAGGGACATCAGGTAGTAC  50
      |||| |||||||| ||||||||||||||||| | |||| ||| |||||||
seq2  CTGT-TGTATTAC-AGGGTGAGTTTGGGAGA-AAGGAC-TCA-GTAGTAC  45

seq1  CTTAATCTTGAACTATAACCTTGCCGAAGTATGAGAAAAGACATGTCTTA  100
        | |||||||||||||    |||   |||||||||||||||||||| ||
seq2  --TTATCTTGAACTATA---CTGC--GAGTATGAGAAAAGACATGTCCTA  88

seq1  GATTTAAGGCACGCAGCCTGTGCTATATTGTTCTGACAGCTCTGGCTAGC  150
      ||||||  ||||||||||||||||||||||||||||||||||| ||||||
seq2  GATTTA--GCACGCAGCCTGTGCTATATTGTTCTGACAGCTCT-GCTAGC  135

seq1  TGTGGTACCAGTCTTCTTAACAGCTGCTTTTTTTTTTTTTTTTTTTTTTT  200
      |||||||||||||||||||||||||||        | |||| | | ||||
seq2  TGTGGTACCAGTCTTCTTAACAGCTGC--------TCTTTTGTGTGTTTT  177

seq1  TTTTTTTTTTTTTTTTTTTTCTAAAAATGTGTTCTGCCAAGTTGCAGGTC  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTTTTTTTTTTTCTAAAAATGTGTTCTGCCAAGTTGCAGGTC  227

seq1  CCTGCATTTTGGTAATTGGTCCCTCAAGGGGACTTCTGCCTTTCCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTTTGGTAATTGGTCCCTCAAGGGGACTTCTGCCTTTCCCTCTC  277

seq1  TAAACAATTCAATAGATTTGAATGGACCAGAAGAGCCATTGAACAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTCAATAGATTTGAATGGACCAGAAGAGCCATTGAACAATTAT  327

seq1  CTAGTGATTAGCTTCCGTGCAGAGTCCAGAGAGGATCGCTGGGAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGATTAGCTTCCGTGCAGAGTCCAGAGAGGATCGCTGGGAGAAAAT  377

seq1  TGGTAAATTCCTTTCATTCTTAATAAAACCCAACATTATGTTGCTAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATTCCTTTCATTCTTAATAAAACCCAACATTATGTTGCTAATGC  427

seq1  CTGATATTAAGAGTTCAAAGTCATCTCTATACCATTGATCTTCAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTAAGAGTTCAAAGTCATCTCTATACCATTGATCTTCAAAGGAA  477

seq1  GAGAGTTCCTAATTTATTTGACAGGCCTGAAAATATGTGAGTTGTTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCCTAATTTATTTGACAGGCCTGAAAATATGTGAGTTGTTGCTC  527

seq1  CCTTCGGCTGGGGGCTTTAGGATACTCAAAGGATTTGTGAGGCTCCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGCTGGGGGCTTTAGGATACTCAAAGGATTTGTGAGGCTCCCAAC  577

seq1  TCTTGTCATTGCTGGTTCCTGATTCCCTTTGAATCAACAGGTTCAGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATTGCTGGTTCCTGATTCCCTTTGAATCAACAGGTTCAGTTGT  627

seq1  AGCGCTCATTTCTCCTGAGCACCCCGAGAAGCCAGGACCTCTTCTGCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTCATTTCTCCTGAGCACCCCGAGAAGCCAGGACCTCTTCTGCGGG  677

seq1  GTCTGAAACCTTTATTTTCATCTCTAGTCTGGCAAACAGCATGCTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAACCTTTATTTTCATCTCTAGTCTGGCAAACAGCATGCTTTGAT  727

seq1  ACAGTTTCATAGTGCTTGTATTGACGGGGAGACAGAGACGGTACCTAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCATAGTGCTTGTATTGACGGGGAGACAGAGACGGTACCTAGCA  777

seq1  ACAGTCAGACTGTTAAAGGAGTGGATGTGTTCTGGAGGCGGTAATGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGACTGTTAAAGGAGTGGATGTGTTCTGGAGGCGGTAATGTTTT  827

seq1  CTCTCCCCTTCCTGAGAGAAACCCTCTCTCAATAAAAATGAATCGTCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCTTCCTGAGAGAAACCCTCTCTCAATAAAAATGAATCGTCAAC  877

seq1  CGCTCTTGAAGCCCTATAAATTGATTTCGGCTCTGTCCATTTCAGGTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTGAAGCCCTATAAATTGATTTCGGCTCTGTCCATTTCAGGTGGC  927

seq1  TTCAGTGTGAGAGACCCATATAAATCTCTTTCAGTCAGGGAGTGTTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTGAGAGACCCATATAAATCTCTTTCAGTCAGGGAGTGTTTAAA  977

seq1  ATGGCAAACTTCAGAGTAAAGGTTTAACAAAAACCATAAATAAAACTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAACTTCAGAGTAAAGGTTTAACAAAAACCATAAATAAAACTTCA  1027

seq1  GAAGTAATGGAAGTGTTTATAAGCATCTGTGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATGGAAGTGTTTATAAGCATCTGTGGAATTC  1064

seq1: chr11_52389614_52390705
seq2: B6Ng01-026J11.g_67_1148

seq1  GAATTCCTGAGGTGGTGAGAGAGATAAATATTTGACTATATTCAGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGGTGGTGAGAGAGATAAATATTTGACTATATTCAGAAGTT  50

seq1  GAACCTCAGTAAAGACCTCATATTTACGCTGTAAAAATCAGATGTTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCAGTAAAGACCTCATATTTACGCTGTAAAAATCAGATGTTCATG  100

seq1  GAATAGAGGGACAGCTCAGTTGGTAAAGTGCCTGTCATACAAGCACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAGGGACAGCTCAGTTGGTAAAGTGCCTGTCATACAAGCACAAGG  150

seq1  ATGTGAGTTCAGATACGTAGCACTTGTGCAAAAAGCCAGGCACCATGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTTCAGATACGTAGCACTTGTGCAAAAAGCCAGGCACCATGGTG  200

seq1  CTAGCCTGTGATCGCAATGCTTGGGAGGTAGAGACAGGAGGATCCCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGTGATCGCAATGCTTGGGAGGTAGAGACAGGAGGATCCCAGGG  250

seq1  GCCAGCCAGCCCAGCTGAAGCAAAGAGCTTCATGTACTGTGAGAGACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAGCCCAGCTGAAGCAAAGAGCTTCATGTACTGTGAGAGACCCT  300

seq1  GTCTCAAAAAAGTAAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAAAGTAAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  350

seq1  AAAAGAGAAGACTTCTAACATTGACCTCTGGCCTTACACACATACGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAGACTTCTAACATTGACCTCTGGCCTTACACACATACGTATT  400

seq1  CATGCACTTGCACGTGCACACACACACACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTTGCACGTGCACACACACACACACACACACACACACACACACA  450

seq1  CACACACACACATGCTGAGAGGTTAGTATATAACCTAGCAAGGATTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATGCTGAGAGGTTAGTATATAACCTAGCAAGGATTGGTT  500

seq1  TGCCCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACGCAGACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACGCAGACACT  550

seq1  ATTGAATATGCCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATATGCCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTATTT  600

seq1  CTTGTGAGGCTATGCTAGTGCCTGGCAAATACAGAAGTGGATGCTCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGGCTATGCTAGTGCCTGGCAAATACAGAAGTGGATGCTCACAG  650

seq1  TCATCTATTGGTTGGAACACAGGGCCCCCAATGGAGGAGCCAGAGAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTGGTTGGAACACAGGGCCCCCAATGGAGGAGCCAGAGAAAGT  700

seq1  ACCCAAAGAGCTGAAGGGGTCTGTAACCCTATAGGTGGAACAACAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGAGCTGAAGGGGTCTGTAACCCTATAGGTGGAACAACAATAAA  750

seq1  AATAAATAAATAAAGGATTGGTTTGCTACTGTGTGGTAGGAAAGCTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAAGGATTGGTTTGCTACTGTGTGGTAGGAAAGCTCTTT  800

seq1  AGCTTAAGGAATTTGTAGTGTCTTGTGGGTGGAGACAAAGATGGGAACAT  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGGAATTTGTAGTGTCTTGTGGGTGGAGACAAAGATGGGAACAT  850

seq1  CTGATGTCCTAGTTGCCATGAATAAATATTCTGAGAAAGCACTTATTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCCTAGTTGCCATGAATAAATATTCTGAGAAAGCACTTATTTGG  900

seq1  CTCAGGTTCCTGTCCATCATTGTGGGGATGTCGAAGCAGTAGATCTTGAA  950
      |||||  | ||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAG--TTCTGTCCATCATTGTGGGGATGTCGAAGCA-TAGATCTTGAA  947

seq1  GCAGAGAGCAGGGGCTAATGCATGCATGCTAGTGCTCAGCTTGCCCCCTC  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  GCAGAGAGCA-GGGCTAATGCATGCATGCTAGTGCTCAGCTTGCCCCCT-  995

seq1  CACTTTATACATCTCAGGATGTATAAAGCTTATCCTTTATACAGCTCAGG  1050
      |||||||||||||||| ||||||| |||||||| ||||||   ||||| |
seq2  CACTTTATACATCTCA-GATGTAT-AAGCTTATTCTTTAT--CGCTCAAG  1041

seq1  GAGTGGTCCCACCCATAGTTAAGATGGGTGTCCTCAACATCC  1092
      ||||||||||| |||||||||| |||||||||||||||||||
seq2  GAGTGGTCCCA-CCATAGTTAAAATGGGTGTCCTCAACATCC  1082