BAC Information

Click to search

BAC

Clone NameB6Ng01-027D14
Chromosome11 (Build37)
Map Location 118,285,238 - 118,411,018
singlet/doubletdoublet
Overlap geneC1qtnf1, D230014K01Rik, D11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D14.bB6Ng01-027D14.g
ACCDH858030DH858031
length158816
definitionDH858030|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D14, 5' end.DH858031|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,410,861 - 118,411,018)(118,285,238 - 118,286,048)
sequence
ccgaggctttaagcagagacaccatcactcaagcaccagctggggggatg
gggaatgaggatgccttctccattccccagccgcagggagaagctcccgt
ctccatcatgcccttgggcatcatgtcagctcttctttgggtgtgagggg
gtgtggtg
gaattcaaaagtttgcaaagccagcctttgcctgtgggatagccgggcag
acgagcccagaatagccggcttggcagaatgttagggccccagtgggaga
agacatggggctgctaatgacatgctgtgctcactggggacccagtgtct
ctctacagcagcccaggtctcacagccctttccccaaaccagagaacagc
agcaggaatgatgtcaccagggagaaggaaagaattgcccagccgggact
ggggagacgcctcagcagggtgcaagagcacctgctggacaagcttgggg
atggagatctcaaaggtaatcgggtgaggagtgaccaacacgcacacacg
cgcacacacacacatgcacacacatgcacacacacacacacacacacaca
cacacactcacacacacagaccaaaaaacatcaaacagatacaccacata
cacacatatatacacaaaagcaaataaatatagcactacaatatgtcggg
gcagagcatgcccctgtggtaggctgcagggagggatgctccaccgtctc
tcgtgctcttctcccaggagctgccctggtctgaggagagagagccggtt
gggaatatggaggaagcctttgtttgcttggcccagacaccctttgtgta
ggtgcagtagctagggaaatttggggcagacatatctttactttggatct
tgacaggagacccttggagcggcgcttggtcttgacatctgtcccatgtt
ctcaggatgatgacctctgacccaggctgtgttgatctaggcttctgctg
acccagcttccactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118410861_118411018
seq2: B6Ng01-027D14.b_50_207 (reverse)

seq1  CACCACACCCCCTCACACCCAAAGAAGAGCTGACATGATGCCCAAGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCCCCTCACACCCAAAGAAGAGCTGACATGATGCCCAAGGGCA  50

seq1  TGATGGAGACGGGAGCTTCTCCCTGCGGCTGGGGAATGGAGAAGGCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGACGGGAGCTTCTCCCTGCGGCTGGGGAATGGAGAAGGCATCC  100

seq1  TCATTCCCCATCCCCCCAGCTGGTGCTTGAGTGATGGTGTCTCTGCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCCATCCCCCCAGCTGGTGCTTGAGTGATGGTGTCTCTGCTTAA  150

seq1  AGCCTCGG  158
      ||||||||
seq2  AGCCTCGG  158

seq1: chr11_118285238_118286048
seq2: B6Ng01-027D14.g_68_883

seq1  GAATTCAAAAGTTTGCAAAGCCAGCCTTTGCCTGTGGGATAGCCGGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTTTGCAAAGCCAGCCTTTGCCTGTGGGATAGCCGGGCAG  50

seq1  ACGAGCCCAGAATAGCCGGCTTGGCAGAATGTTAGGGCCCCAGTGGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCCCAGAATAGCCGGCTTGGCAGAATGTTAGGGCCCCAGTGGGAGA  100

seq1  AGACATGGGGCTGCTAATGACATGCTGTGCTCACTGGGGACCCAGTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGGGCTGCTAATGACATGCTGTGCTCACTGGGGACCCAGTGTCT  150

seq1  CTCTACAGCAGCCCAGGTCTCACAGCCCTTTCCCCAAACCAGAGAACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGCAGCCCAGGTCTCACAGCCCTTTCCCCAAACCAGAGAACAGC  200

seq1  AGCAGGAATGATGTCACCAGGGAGAAGGAAAGAATTGCCCAGCCGGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAATGATGTCACCAGGGAGAAGGAAAGAATTGCCCAGCCGGGACT  250

seq1  GGGGAGACGCCTCAGCAGGGTGCAAGAGCACCTGCTGGACAAGCTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACGCCTCAGCAGGGTGCAAGAGCACCTGCTGGACAAGCTTGGGG  300

seq1  ATGGAGATCTCAAAGGTAATCGGGTGAGGAGTGACCAACACGCACACACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATCTCAAAGGTAATCGGGTGAGGAGTGACCAACACGCACACACG  350

seq1  CGCACACACACACATGCACACACATGCACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACACACATGCACACACATGCACACACACACACACACACACACA  400

seq1  CACACACTCACACACACAGACCAAAAAACATCAAACAGATACACCACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCACACACACAGACCAAAAAACATCAAACAGATACACCACATA  450

seq1  CACACATATATACACAAAAGCAAATAAATATAGCACTACAATATGTCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATACACAAAAGCAAATAAATATAGCACTACAATATGTCGGG  500

seq1  GCAGAGCATGCCCCTGTGGTAGGCTGCAGGGAGGGATGCTCCACCGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATGCCCCTGTGGTAGGCTGCAGGGAGGGATGCTCCACCGTCTC  550

seq1  TCGTGCTCTTCTCCCAGGAGCTGCCCTGGTCTGAGGAGAGAGAGCCGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTCTTCTCCCAGGAGCTGCCCTGGTCTGAGGAGAGAGAGCCGGTT  600

seq1  GGGAATATGGAGGAAGCCTTTG-TTGCTTGGCCCAGACACCC-TTGTGTA  648
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  GGGAATATGGAGGAAGCCTTTGTTTGCTTGGCCCAGACACCCTTTGTGTA  650

seq1  GGTGCAGTAGCTAGGG-AATTTGGGGCAGACATAGC-TTACTTTGGAACT  696
      |||||||||||||||| ||||||||||||||||| | |||||||||| ||
seq2  GGTGCAGTAGCTAGGGAAATTTGGGGCAGACATATCTTTACTTTGGATCT  700

seq1  TGACAGGGAGACCC-TGGAGCGGCGCTTGGTCTTGACATCTGTCCCATGT  745
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  TGACA-GGAGACCCTTGGAGCGGCGCTTGGTCTTGACATCTGTCCCATGT  749

seq1  TCTCAGGATGATGACCTCTGACCCAGGCTGTGCTGATCTAGGC-TCTGCT  794
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  TCTCAGGATGATGACCTCTGACCCAGGCTGTGTTGATCTAGGCTTCTGCT  799

seq1  GACCCAGGCTCCACTGA  811
      |||||||  ||||||||
seq2  GACCCAGCTTCCACTGA  816