BAC Information

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BAC

Clone NameB6Ng01-029O08
Chromosome11 (Build37)
Map Location 51,223,061 - 51,224,090
singlet/doubletsinglet
Overlap geneCol23a1
Upstream geneRufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneAgxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029O08.bB6Ng01-029O08.g
ACCDH859959DH859960
length8861,034
definitionDH859959|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O08, 5' end.DH859960|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggtcatccttggctacatactgcatttgaggccagcctcgggt
acatgagaccctgtcacagaaaatccaagccagggccagcgagatggctg
gactgtaaaggagcttgcatcagagtctgaccaccttagttccattccca
gcacccacagagtgggaggagccagccaggtcctctgacttccatgctgg
ctctgtaatgtgtgcgagtccactcacatttacatgtacacatacacaaa
tccaaactgtaaaattcaaaccaaaacaaaggaaataaaaaactagaaag
caacacccctcagctgaaaaaaataattaaatttctgataaatcaaaaaa
cttggacactgtagggaaactctgctcaatggtaaaaatagttccccaga
gtatgcatgggcctagaaagacgggcggctcagtggttaagagcacttcc
tgctcctgcagaggactcaggttcagctcttggcacccacatctggtaac
actactgcctggaactccagatccagggcatctgacaccctctgtccttt
gcaggcactgcacacacatggtacacgtcaatcatgctggcgcaggtgca
cacacatgcacacatatataaataaaaatattaatacattttacaagtta
tttaaaaagttacatgtcatgtgatttcacacacctgatgttattgaatg
gaaagttaaacattgaaattagtggttgccaggggctagggatgagggag
ggaggtgatcctaccgaagacgggagagtgtgactacatgagggatcttt
gcgtggtgggtcacatgagtccatgtatgttaacactctatagaagaaaa
catacttgcactcacacacacacacacctacatcct
gaattctaaagaagctgtcccatattccagcggaggaatgccacaggtac
agagtagatagactagccagtggtttaaggacagtagcaggcaaaaaggg
gagtgaccttcttccctgtccttttctgtgagctgccaccagaaggtgag
gcccaaagttctggtggctgttaccacttcagataaccagtcaaggcaag
cctctcacagatgtgccccgctgcttgaggtttcacggattccagatgta
gtagccaagttgaaaaccaagacgagccatcacaccacacaagaaacagg
agccctgggtttgcagagagaccctgcctcaaatgaatgggtaggtaatg
aaggaaggatagacatctaacaccatcttttggtttcaacatatatgaaa
aggtacatacacacgcatacacacacacatgcacacatgcatatacgtgc
acacacatgcacgtacgtgtatacacatgcacaaaataaagttcttaagg
tactggttctcaacctgctggtcatgacccctttggggatgaaagacgct
ttcacagggttcacataagaccattggaaaacacagatatttgctttata
attcgaaacagtagcaaaattatagttatgaagtagcaatgaaaataatt
ttatggttgggtgtcaccacaacctgagaaactgtataagggtcgcagca
ttaggaagggtgagaaaaactgtctcaggctgccccatgatttttgagga
cacttggttgggtagatttttttttttcagatacaacccatgaaaacatt
tttgagcttaacctaaaattgtttctaaatagaggggaagagacaaactg
tacacagagaaaaatcttttggaacaacatgttctatatctttcatatgt
taccagataaaaagatctcggcacaactcaatactccggggtccttacaa
ttgattactttgcttgtttacttgtttgtttgttgggggtgctaggcaca
ctgtagaacctaatctgtggattctatctcccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51223061_51224090
seq2: B6Ng01-029O08.g_68_1101

seq1  GAATTCTAAAGAAGCTGTCCCATATTCCAGCGGAGGAATGCCACAGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGAAGCTGTCCCATATTCCAGCGGAGGAATGCCACAGGTAC  50

seq1  AGAGTAGATAGACTAGCCAGTGGTTTAAGGACAGTAGCAGGCAAAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGATAGACTAGCCAGTGGTTTAAGGACAGTAGCAGGCAAAAAGGG  100

seq1  GAGTGACCTTCTTCCCTGTCCTTTTCTGTGAGCTGCCACCAGAAGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCTTCTTCCCTGTCCTTTTCTGTGAGCTGCCACCAGAAGGTGAG  150

seq1  GCCCAAAGTTCTGGTGGCTGTTACCACTTCAGATAACCAGTCAAGGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGTTCTGGTGGCTGTTACCACTTCAGATAACCAGTCAAGGCAAG  200

seq1  CCTCTCACAGATGTGCCCCGCTGCTTGAGGTTTCACGGATTCCAGATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACAGATGTGCCCCGCTGCTTGAGGTTTCACGGATTCCAGATGTA  250

seq1  GTAGCCAAGTTGAAAACCAAGACGAGCCATCACACCACACAAGAAACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAAGTTGAAAACCAAGACGAGCCATCACACCACACAAGAAACAGG  300

seq1  AGCCCTGGGTTTGCAGAGAGACCCTGCCTCAAATGAATGGGTAGGTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGGTTTGCAGAGAGACCCTGCCTCAAATGAATGGGTAGGTAATG  350

seq1  AAGGAAGGATAGACATCTAACACCATCTTTTGGTTTCAACATATATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGATAGACATCTAACACCATCTTTTGGTTTCAACATATATGAAA  400

seq1  AGGTACATACACACGCATACACACACACATGCACACATGCATATACGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATACACACGCATACACACACACATGCACACATGCATATACGTGC  450

seq1  ACACACATGCACGTACGTGTATACACATGCACAAAATAAAGTTCTTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGCACGTACGTGTATACACATGCACAAAATAAAGTTCTTAAGG  500

seq1  TACTGGTTCTCAACCTGCTGGTCATGACCCCTTTGGGGATGAAAGACGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTCTCAACCTGCTGGTCATGACCCCTTTGGGGATGAAAGACGCT  550

seq1  TTCACAGGGTTCACATAAGACCATTGGAAAACACAGATATTTGCTTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGGTTCACATAAGACCATTGGAAAACACAGATATTTGCTTTATA  600

seq1  ATTCGAAACAGTAGCAAAATTATAGTTATGAAGTAGCAATGAAAATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAAACAGTAGCAAAATTATAGTTATGAAGTAGCAATGAAAATAATT  650

seq1  TTATGGTTGGGTGTCACCACAACCTGAGAAACTGTATAAGGGTCGCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTGGGTGTCACCACAACCTGAGAAACTGTATAAGGGTCGCAGCA  700

seq1  TTAGGAAGGGTGAGAAAAACTGTCTCAGGCTGCCCCATGA-TTTTGAGGA  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAGGAAGGGTGAGAAAAACTGTCTCAGGCTGCCCCATGATTTTTGAGGA  750

seq1  CACTTGGTTGGGTAGA-TTTTTTTTTTCAGATACAACCCATGAAAACA-T  797
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  CACTTGGTTGGGTAGATTTTTTTTTTTCAGATACAACCCATGAAAACATT  800

seq1  TTTGAGCTTAACCTAAAATTGGTTCTAAATAGA-GGGAAGAGACAAACTG  846
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTTGAGCTTAACCTAAAATTGTTTCTAAATAGAGGGGAAGAGACAAACTG  850

seq1  TACACAGAGAAAAATCTTTGGAAACAACATGTCTAATATC-TTCATATGT  895
      ||||||||||||||||||| | ||||||||||   ||||| |||||||||
seq2  TACACAGAGAAAAATCTTTTGGAACAACATGTTCTATATCTTTCATATGT  900

seq1  TA-CAGATATAAAGATCTCGGCACAACTCAATACTCCGTGGTCCTTACAA  944
      || |||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TACCAGATAAAAAGATCTCGGCACAACTCAATACTCCGGGGTCCTTACAA  950

seq1  TTGATTACTTTGCTTGTTTACTTGTTTGTTTGTTTGTGGGTGCTATGGCA  994
      |||||||||||||||||||||||||||||||| ||| |||||||| ||||
seq2  TTGATTACTTTGCTTGTTTACTTGTTTGTTTG-TTGGGGGTGCTA-GGCA  998

seq1  CACATGTAGAGCC-AATCTGTGGATTCTATCCCCCTA  1030
      ||| |||||| || ||||||||||||||||| |||||
seq2  CAC-TGTAGAACCTAATCTGTGGATTCTATCTCCCTA  1034