BAC Information

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BAC

Clone NameB6Ng01-030I24
Chromosome11 (Build37)
Map Location 78,204,537 - 78,350,710
singlet/doubletdoublet
Overlap geneOTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20
Upstream geneSsh2, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1
Downstream geneTmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030I24.bB6Ng01-030I24.g
ACCDH860429DH860430
length1,035982
definitionDH860429|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I24, 5' end.DH860430|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,349,670 - 78,350,710)(78,204,537 - 78,205,517)
sequence
gaattcatgtggaaacagaaggctgtaacagaagaaaagatttgaagccg
aacgggagttcagagatcagatgatgtctgaattgacagaatttagtaat
gcttaatgcagcactttggagaaaagtgaagaaaggagccaaacacgatt
gccatggatctggattggaccgagagtatggctggaaaggacagtttaaa
gagatgggtaagatagatatggtacatagcgggctatcagatccccagcc
cacccctaactcccaccacaaatatgctccaggaacgtgggattgagttt
cctaagcatgaaggctgtgcctggctctacgctccctggctctcccaggt
ccgcaggcacaacaaatagttgtagctgtggagtttggagaaggcgtaga
cacaggaagaactgggcaaatggcgcggctgtctttactaaattatactc
ctgcaatgtccgaacctcggttcaccggtgacatcgagggagccaggctg
agctgagtgtaaacccgatccctaaaaactccgaggtagggaaaccgccg
ctttccacccggtccagccaatcctcggcgctgggtcacgtcggcctcct
cccgtcccaagtcctccacgtccccgacctacctgacgagccgcctcggc
agcgctctgcggccctgacgactgtcggtagaagcttctctccggcaact
gcaaccggctgctgccacggagacaagatctaggagccacacgtcacccc
cgagtccagaagcaccagcatccgcccaccctgcggtgcttgctgggaaa
tagatgcaacacgcgataactgcccactggcccagaacctttgctcaggg
gcggggactacgacacgggaagtagatttgttcccgacccggaagtagaa
ggaagtcaaacgtcaagttttcgacccactgctagctcgcgcgctgtgca
tgccggtctgtagtctcttttcccgatctgtaggtgggcctgtactccgg
agtcggcgggcgcaggatgtgagcttcacagctga
gaattcattaatggaaaagagtccaggataaagtcaaatatttttttctt
tcttttcttttccttatatatattttttttttccttcgagacagggtttc
tctgtatagccctggctgtcctggaactcactttgtagaccaggttggcc
tcgaactcagaaatccgcctgcctctgcctccctagtgctgggattaaag
gcgtgcgccaccacacccggctagtcaaatatttttgagggttgaacact
gacagtaagttcacaaagaagcagggcaaacacaaaaagtataacaagtg
gatttgagataatagatgtgaagtaaataagaaagtgaaattctacttca
tgctctctgttaacagtgacaggatgtggaggcaggaaggccaagagctc
acaaatgcacgagctgctgtctcaagaacacagaagcaaaacaaaaactg
acagaaggcaggtgtgtggcacacatctggaatcctagcacttaggaggc
tgaggcaggagcattgccataagttcaaggccggactgaattacatagtg
agttccaggtcagcctgggctacagagtgagattcgaagaaaaacgaaca
aattaattgcatacctcccaaacccataatagacagaaaagtggaaaacc
acacaaatcaatacaaaaatacagaaaatattttataaacgtgtgaagta
ggggaagataccttgaagcatgacatcaaatcaggaaggcatacaggaat
atattgacagattttactcagtaaaaattcaaaatttatttagaacaaaa
tataatataaacaaagttaaaatattaaaagttgcagctagaaagaactg
ttgcaacatgtatggtgaaggatagtatccctaatatataaagagctcct
ccaaatcaattaaagttcaatccctcatgaaaaaaatagacaataaacat
gaattttcaaacaacctaccaatgaccggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78349670_78350710
seq2: B6Ng01-030I24.b_44_1078 (reverse)

seq1  TCGGCTGTG-AGCTCACATCCTGCGCCCGCCGACTCCGGAGTTACAGCCC  49
      || |||||| ||||||||||||||||||||||||||||||| ||||| ||
seq2  TCAGCTGTGAAGCTCACATCCTGCGCCCGCCGACTCCGGAG-TACAGGCC  49

seq1  AACCCTACAGATCGGG-AAAGAGACTACAAGACCCGGCATGCACAGCGCG  98
       | ||||||||||||| ||||||||||| ||| |||||||||||||||||
seq2  CA-CCTACAGATCGGGAAAAGAGACTAC-AGA-CCGGCATGCACAGCGCG  96

seq1  CGAGCTAGCAGTGGGTCGAAAACTTGACGTTTGACTTCCTTCTACTTCCG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTAGCAGTGGGTCGAAAACTTGACGTTTGACTTCCTTCTACTTCCG  146

seq1  GGTTCGGGAACAAATCTACTTCCCGTGTCGTAGTCCCCGCCCCCTGAGCA  198
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GG-TCGGGAACAAATCTACTTCCCGTGTCGTAGTCCCCG-CCCCTGAGCA  194

seq1  AAGGCTTCTGGGCCTAGTGGGCAGTTATCGCGTGTTGCATCTATTTCCCA  248
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGG-TTCTGGGCC-AGTGGGCAGTTATCGCGTGTTGCATCTATTTCCCA  242

seq1  GCAAGCACCGCAGGGTGGGCGGATGCTGGTGCTTCTGGACTCGGGGGTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACCGCAGGGTGGGCGGATGCTGGTGCTTCTGGACTCGGGGGTGA  292

seq1  CGTGTGGCTCCTAGATCTTGTCTCCGTGGCAGCAGCCGGTTGCAGTTGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGCTCCTAGATCTTGTCTCCGTGGCAGCAGCCGGTTGCAGTTGCC  342

seq1  GGAGAGAAGCTTCTACCGACAGTCGTCAGGGCCGCAGAGCGCTGCCGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGCTTCTACCGACAGTCGTCAGGGCCGCAGAGCGCTGCCGAGG  392

seq1  CGGCTCGTCAGGTAGGTCGGGGACGTGGAGGACTTGGGACGGGAGGAGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCGTCAGGTAGGTCGGGGACGTGGAGGACTTGGGACGGGAGGAGGC  442

seq1  CGACGTGACCCAGCGCCGAGGATTGGCTGGACCGGGTGGAAAGCGGCGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGTGACCCAGCGCCGAGGATTGGCTGGACCGGGTGGAAAGCGGCGGT  492

seq1  TTCCCTACCTCGGAGTTTTTAGGGATCGGGTTTACACTCAGCTCAGCCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCTCGGAGTTTTTAGGGATCGGGTTTACACTCAGCTCAGCCTG  542

seq1  GCTCCCTCGATGTCACCGGTGAACCGAGGTTCGGACATTGCAGGAGTATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTCGATGTCACCGGTGAACCGAGGTTCGGACATTGCAGGAGTATA  592

seq1  ATTTAGTAAAGACAGCCGCGCCATTTGCCCAGTTCTTCCTGTGTCTACGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTAAAGACAGCCGCGCCATTTGCCCAGTTCTTCCTGTGTCTACGC  642

seq1  CTTCTCCAAACTCCACAGCTACAACTATTTGTTGTGCCTGCGGACCTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAAACTCCACAGCTACAACTATTTGTTGTGCCTGCGGACCTGGG  692

seq1  AGAGCCAGGGAGCGTAGAGCCAGGCACAGCCTTCATGCTTAGGAAACTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGGGAGCGTAGAGCCAGGCACAGCCTTCATGCTTAGGAAACTCA  742

seq1  ATCCCACGTTCCTGGAGCATATTTGTGGTGGGAGTTAGGGGTGGGCTGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACGTTCCTGGAGCATATTTGTGGTGGGAGTTAGGGGTGGGCTGGG  792

seq1  GATCTGATAGCCCGCTATGTACCATATCTATCTTACCCATCTCTTTAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATAGCCCGCTATGTACCATATCTATCTTACCCATCTCTTTAAAC  842

seq1  TGTCCTTTCCAGCCATACTCTCGGTCCAATCCAGATCCATGGCAATCGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCCAGCCATACTCTCGGTCCAATCCAGATCCATGGCAATCGTG  892

seq1  TTTGGCTCCTTTCTTCACTTTTCTCCAAAGTGCTGCATTAAGCATTACTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCCTTTCTTCACTTTTCTCCAAAGTGCTGCATTAAGCATTACTA  942

seq1  AATTCTGTCAATTCAGACATCATCTGATCTCTGAACTCCCGTTCGGCTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCAATTCAGACATCATCTGATCTCTGAACTCCCGTTCGGCTTC  992

seq1  AAATCTTTTCTTCTGTTACAGCCTTCTGTTTCCACATGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTCTTCTGTTACAGCCTTCTGTTTCCACATGAATTC  1035

seq1: chr11_78204537_78205517
seq2: B6Ng01-030I24.g_67_1048

seq1  GAATTCATTAATGGAAAAGAGTCCAGGATAAAGTCAAATATTTTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATGGAAAAGAGTCCAGGATAAAGTCAAATATTTTTTTCTT  50

seq1  TCTTTTCTTTTCCTTATATATATTTTTTTTTTCCTTCGAGACAGGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCCTTATATATATTTTTTTTTTCCTTCGAGACAGGGTTTC  100

seq1  TCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCC  150

seq1  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAG  200

seq1  GCGTGCGCCACCACACCCGGCTAGTCAAATATTTTTGAGGGTTGAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCACCACACCCGGCTAGTCAAATATTTTTGAGGGTTGAACACT  250

seq1  GACAGTAAGTTCACAAAGAAGCAGGGCAAACACAAAAAGTATAACAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAAGTTCACAAAGAAGCAGGGCAAACACAAAAAGTATAACAAGTG  300

seq1  GATTTGAGATAATAGATGTGAAGTAAATAAGAAAGTGAAATTCTACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGATAATAGATGTGAAGTAAATAAGAAAGTGAAATTCTACTTCA  350

seq1  TGCTCTCTGTTAACAGTGACAGGATGTGGAGGCAGGAAGGCCAAGAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGTTAACAGTGACAGGATGTGGAGGCAGGAAGGCCAAGAGCTC  400

seq1  ACAAATGCACGAGCTGCTGTCTCAAGAACACAGAAGCAAAACAAAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCACGAGCTGCTGTCTCAAGAACACAGAAGCAAAACAAAAACTG  450

seq1  ACAGAAGGCAGGTGTGTGGCACACATCTGGAATCCTAGCACTTAGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGCAGGTGTGTGGCACACATCTGGAATCCTAGCACTTAGGAGGC  500

seq1  TGAGGCAGGAGCATTGCCATAAGTTCAAGGCCGGACTGAATTACATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGAGCATTGCCATAAGTTCAAGGCCGGACTGAATTACATAGTG  550

seq1  AGTTCCAGGTCAGCCTGGGCTACAGAGTGAGATTCGAAG-AAAACGAACA  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTTCCAGGTCAGCCTGGGCTACAGAGTGAGATTCGAAGAAAAACGAACA  600

seq1  AATTAATTGCATACCTCCCAAACCCATAATAGACAGAAAAGTGGAAAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTGCATACCTCCCAAACCCATAATAGACAGAAAAGTGGAAAACC  650

seq1  ACACAAATCAATACAAAAATACAGAAAATATTTTATAAACGTGTGAAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATCAATACAAAAATACAGAAAATATTTTATAAACGTGTGAAGTA  700

seq1  -GGGAAGATACCTTGAAGCATGACATCAAATCAGGAAGGCATACAGGAAT  748
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGATACCTTGAAGCATGACATCAAATCAGGAAGGCATACAGGAAT  750

seq1  ATATTGACAGATTTTACTCAGTAAAAATTCAAAATTTATTTAGAACAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACAGATTTTACTCAGTAAAAATTCAAAATTTATTTAGAACAAAA  800

seq1  TATAATATAAACAAAGTTAAAATA-TAAAAGTTGCAGCTAGAAGGAACTG  847
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  TATAATATAAACAAAGTTAAAATATTAAAAGTTGCAGCTAGAAAGAACTG  850

seq1  TTGCAACATGTATGGTGAAGGATTAGTATCCATAATATATAAAGAGCTCC  897
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  TTGCAACATGTATGGTGAAGGA-TAGTATCCCTAATATATAAAGAGCTCC  899

seq1  TCCAAATCAATTAAAGGTCAATCCCTCAGGAAAAAAAATAGACAATAAAC  947
      |||||||||||||||| ||||||||||| | |||||||||||||||||||
seq2  TCCAAATCAATTAAAGTTCAATCCCTCATG-AAAAAAATAGACAATAAAC  948

seq1  ATGAATTTACAAACAAACTACCAATGACCAGAGC  981
      |||||||| ||||||| |||||||||||| ||||
seq2  ATGAATTTTCAAACAACCTACCAATGACCGGAGC  982