BAC Information

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BAC

Clone NameB6Ng01-030J06
Chromosome11 (Build37)
Map Location 94,094,308 - 94,220,165
singlet/doubletdoublet
Overlap geneWfikkn2, 3300001P08Rik, Ankrd40, Abcc3
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1
Downstream geneCacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030J06.bB6Ng01-030J06.g
ACCDH860439DH860440
length165895
definitionDH860439|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J06, 5' end.DH860440|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,220,001 - 94,220,165)(94,094,308 - 94,095,211)
sequence
cttcttcacatccatctccaccatcatggtcatcgtggccagcacgccgc
tcttcatggtggttgtcttgcccctggctgtgctctatggctttgtgcag
gtgtcagcgtggatgggcgggacgctggagccagtggggcagggaatgtg
gtggtggtggtggtg
gaattcacctccccaacacagcttgtacccagatttttacgtggattctg
gggatccgaactcgagtcttcatacttgaactgagacataccccactccc
tgtttctttctctctttctttctttctttctttctttctttctttctttc
tttctttctttctttcttcctttctttcttcctttctttctctctttctt
ttttcttttgttttaactttgtttttgagatgggttttctttgcctagtc
tgttcttgtacttgaaatccttctgcctctgactcccaagtgctggaact
gtagccctgtgctttggccatggctaagtaaatgtcccattactcttgcc
ttagttttccttacctagaaaatgtcattgtgcctcatgagatctcagtg
tggaccccaggagaaggcgcttggtgccaccacacggtaaactgttggtt
cgatttatcataatggagcagttggagatcagagctgaaagaaagaatga
gccacatgcctgtgtgttacttctgtcccctttccctagttaggttttgt
cctagtgcttgggtagctttctggtgccactgcccagagggtgacatcag
actagtgagcagctagccagacaatgggacagagtgtcctaggaggctgg
gagggaggagggtaaacaaagccatagtgccttgcttaggggtggtgggg
acagttccggtctagtgtcagccagccttgaatagattagaaagggagaa
aagcctggagagcacgctaggtgtagggagagcatacagcctagaatagc
aaggggcgagctccaccacaagcaggaaaagcatgaggttggccttgctg
cagtgcctctggtccttgtgtcctgagaagatgagggcatgtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94220001_94220165
seq2: B6Ng01-030J06.b_50_214 (reverse)

seq1  CACCACCACCACCACCACATTCCCTGCCCCACTGGCTCCAGCGTCCCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCACCACCACATTCCCTGCCCCACTGGCTCCAGCGTCCCGCC  50

seq1  CATCCACGCTGACACCTGCACAAAGCCATAGAGCACAGCCAGGGGCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACGCTGACACCTGCACAAAGCCATAGAGCACAGCCAGGGGCAAGA  100

seq1  CAACCACCATGAAGAGCGGCGTGCTGGCCACGATGACCATGATGGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCATGAAGAGCGGCGTGCTGGCCACGATGACCATGATGGTGGAG  150

seq1  ATGGATGTGAAGAAG  165
      |||||||||||||||
seq2  ATGGATGTGAAGAAG  165

seq1: chr11_94094308_94095211
seq2: B6Ng01-030J06.g_66_960

seq1  GAATTCACCTCCCCAACACAGCTTGTACCCAGATTTTTACGTGGATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCCCAACACAGCTTGTACCCAGATTTTTACGTGGATTCTG  50

seq1  GGGATCCGAACTCGAGTCTTCATACTTGAACTGAGACATACCCCACTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCGAACTCGAGTCTTCATACTTGAACTGAGACATACCCCACTCCC  100

seq1  TGTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  150

seq1  TTTCTTTCTTTCTTTCTTCCTTTCTTTCTTCCTTTCTTTCTCTCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTCCTTTCTTTCTTCCTTTCTTTCTCTCTTTCTT  200

seq1  TTTTCTTTTGTTTTAACTTTGTTTTTGAGATGGGTTTTCTTTGCCTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGTTTTAACTTTGTTTTTGAGATGGGTTTTCTTTGCCTAGTC  250

seq1  TGTTCTTGTACTTGAAATCCTTCTGCCTCTGACTCCCAAGTGCTGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTACTTGAAATCCTTCTGCCTCTGACTCCCAAGTGCTGGAACT  300

seq1  GTAGCCCTGTGCTTTGGCCATGGCTAAGTAAATGTCCCATTACTCTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGTGCTTTGGCCATGGCTAAGTAAATGTCCCATTACTCTTGCC  350

seq1  TTAGTTTTCCTTACCTAGAAAATGTCATTGTGCCTCATGAGATCTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCCTTACCTAGAAAATGTCATTGTGCCTCATGAGATCTCAGTG  400

seq1  TGGACCCCAGGAGAAGGCGCTTGGTGCCACCACACGGTAAACTGTTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCAGGAGAAGGCGCTTGGTGCCACCACACGGTAAACTGTTGGTT  450

seq1  CGATTTATCATAATGGAGCAGTTGGAGATCAGAGCTGAAAGAAAGAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTATCATAATGGAGCAGTTGGAGATCAGAGCTGAAAGAAAGAATGA  500

seq1  GCCACATGCCTGTGTGTTACTTCTGTCCCCTTTCCCTAGTTAGGTTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGCCTGTGTGTTACTTCTGTCCCCTTTCCCTAGTTAGGTTTTGT  550

seq1  CCTAGTGCTTGGGTAGCTTTCTGGTGCCACTGCCCAGAGGGTGACATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCTTGGGTAGCTTTCTGGTGCCACTGCCCAGAGGGTGACATCAG  600

seq1  ACTAGTGAGCAGCTAGCCAGACAATGGGACAGAGTGTCCTAGGAGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGAGCAGCTAGCCAGACAATGGGACAGAGTGTCCTAGGAGGCTGG  650

seq1  GAGGGAGGAGGGTAAACAAAGCCATAGTGCCTTGCTTAGGGGTGGTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGAGGGTAAACAAAGCCATAGTGCCTTGCTTAGGGGTGGTGGGG  700

seq1  ACAGTTCCGGTCTAGTGTCAGCCAAGCCTGAATAGATTAGAAGGGGAGAA  750
      ||||||||||||||||||||||||  | |||||||||||||| |||||||
seq2  ACAGTTCCGGTCTAGTGTCAGCCAGCCTTGAATAGATTAGAAAGGGAGAA  750

seq1  AAGGCCTGGAGAGCACGCTAGGTGTAGGGAGAGCCATACAGCCTAGAAAT  800
      || |||||||||||||||||||||||||||||| |||||||||||| |||
seq2  AA-GCCTGGAGAGCACGCTAGGTGTAGGGAGAG-CATACAGCCTAG-AAT  797

seq1  AGCAAGGGGCGAGCTCCACCACAAGCAGGAAAAGCATGAGGCTGGCCTTG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCAAGGGGCGAGCTCCACCACAAGCAGGAAAAGCATGAGGTTGGCCTTG  847

seq1  CTGCAGGTGGCCTCGGGTTCCTTGTGTCCTGGAGGAGGATTGAGGGCATG  900
      ||||||   ||||| || |||||||||||| ||| ||   ||||||||||
seq2  CTGCAG--TGCCTCTGG-TCCTTGTGTCCT-GAGAAG--ATGAGGGCATG  891

seq1  TCTA  904
      ||||
seq2  TCTA  895