BAC Information

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BAC

Clone NameB6Ng01-030K06
Chromosome11 (Build37)1 (Build37)
Map Location 53,154,267 - 53,155,191137,182,080 - 137,182,316
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10
Downstream geneAff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030K06.bB6Ng01-030K06.g
ACCDH860483DH860484
length920962
definitionDH860483|Mus musculus domesticus DNA, BAC clone: B6Ng01-030K06, 5' end.DH860484|Mus musculus domesticus DNA, BAC clone: B6Ng01-030K06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,154,267 - 53,155,191)(137,182,080 - 137,182,316)
sequence
gaattctcataggatatcccatcataactgaatttctttacagaaagtaa
aaaagaaggctgctttctttctatcctcctcctttttttttttttttttt
tgagacagggtctcattacatagcccaggctaccctaacttcttatgtag
tccaggttgccttcaaactctccatcttcctacctcagcctaccaagtcc
tggaatgatgggtgtacaccacagtaagtttctgggtttttgttttgttt
tgttttgttgtttttttttttttttttttttttcgagaaaggggttctct
gtatagccctggctgtcctggaactcactttgtagaccaggctggcctcg
aactcggaaatctgcctgcctctgcctcccgagtgctgggactaaagggg
tgtgccaccccgccctactcacagtaagtttctgaatgactcacttggta
gtcaaataaagacagccatttactgacgcaaagttaatcattaaatcata
ctagattgcagcagccagaaaatacatgtcgagcatgatattcttattaa
cggcaggccaaatctaaaagtgtcctggcagagaagttaatatatttgtt
ttgaaactgctgctctttggctataataaataatgcgagatctgaaattc
ttaggagaactacctcaccactgttacttgatcctagataactgtggaaa
ttagcttttgctgaagatacgaaacttttttttaaggacttccgtctatg
aatcaaaatattcctctgttgtctaagcttcttgtcacagtcacaagatt
attttcatgccacacagtcactacaggcatgttttcagaggcttacacta
tggcgcacatagcctgttttaggcattaatgaggtggtgactaggatcag
gatcgaggccatttgactat
gaattcaactcacgggctggagagatgactcagcggttaggagcactgac
tgctcttccagaggtcctgagttcaattcccagcaaccacatggtggctc
acaaccatctgtaatgggatctgacgccctcttcaggtgtgtctgaagaa
agacttcagctcataagacacaaatgatccaattagaaagcaggtaaagg
acctgagcagacatttctttttaagagtttatttttaaccagaggtgtct
gttggattcattggatttacaggctgtggaccacccaacatggttgctgg
gaattgagcccaggtcctctaaaagagcagcaagagctctcagctgctga
gtagcctcagtcccagagaagatatacaaagggctgatgatggcacacag
agacaccccaacatcgtctttaggagggtgctaacccaaaccgcactgag
gcactgtttcacatgctccaggatggctgagattttttttaaaaaaccct
taaagtaagaggatgcagggacagaggaccttcctgcactgtggaggctg
cttgggggaaagagtgcagtacatccccagatggctgaagagacgctgta
cagcggcgtagctgcttaatcctagcactgggaatccgaagcaggaagat
tatgagtttgaggccagagtggtttacttgaggtttggtggtgcacacct
ttaatcccagcgctgaggaggcagaggcaggggtatctccgagtttgagg
ccggcctgagctaaatgatgagactcaagaacaaaaggcaagagatggaa
gacataagccagcacttctcctagagagagatccaagagaagtgaagcag
actacatttgattattcactgtggcaaaagttgggctgggaacaatggcc
aggggttaaggacactggctgctcctcaaagggctttggtctgggcactt
gcatggggatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53154267_53155191
seq2: B6Ng01-030K06.b_44_963

seq1  GAATTCTCATAGGATATCCCATCATAACTGAATTTCTTTACAGAAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAGGATATCCCATCATAACTGAATTTCTTTACAGAAAGTAA  50

seq1  AAAAGAAGGCTGCTTTCTTTCTATCCTCCTCCTTTTTTTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGCTGCTTTCTTTCTATCCTCCTCCTTTTTTTTTTTTTTTTTT  100

seq1  TGAGACAGGGTCTCATTACATAGCCCAGGCTACCCTAACTTCTTATGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTCTCATTACATAGCCCAGGCTACCCTAACTTCTTATGTAG  150

seq1  TCCAGGTTGCCTTCAAACTCTCCATCTTCCTACCTCAGCCTACCAAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTGCCTTCAAACTCTCCATCTTCCTACCTCAGCCTACCAAGTCC  200

seq1  TGGAATGATGGGTGTACACCACAGTAAGTTTCTGGGTTTTTGTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGATGGGTGTACACCACAGTAAGTTTCTGGGTTTTTGTTTTGTTT  250

seq1  TGTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTTCGAGATAGGGGTTCTCT  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTTCGAGAAAGGGGTTCTCT  300

seq1  GTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  350

seq1  AACTCGGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGCG  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACTCGGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGGG  400

seq1  TGTGCCACCACGCCCTACTCACAGTAAGTTTCTGAATGACTCACTTGGTA  450
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCCCGCCCTACTCACAGTAAGTTTCTGAATGACTCACTTGGTA  450

seq1  GTCAAATAAAGACAGCCATTTACTGACGCAGAGTTAATCATTAAATCATA  500
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCAAATAAAGACAGCCATTTACTGACGCAAAGTTAATCATTAAATCATA  500

seq1  CTAGATTGCAGCAGCCAGAAAATACATGTCGAGCATGATATTCTTATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTGCAGCAGCCAGAAAATACATGTCGAGCATGATATTCTTATTAA  550

seq1  CGGCAGGCCAAATCTAAAAGTGTCCTGGCAGAGAAGTTAATATATTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGCCAAATCTAAAAGTGTCCTGGCAGAGAAGTTAATATATTTGTT  600

seq1  TTGAAACTGCTGCTCTTTGGCTATAATAAATAATGCGAGATCTGAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTGCTGCTCTTTGGCTATAATAAATAATGCGAGATCTGAAATTC  650

seq1  TTAGGAGAACTACCTCACCACTGTTACTTGATCCTAGATAACTGTGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAACTACCTCACCACTGTTACTTGATCCTAGATAACTGTGGAAA  700

seq1  TTAGCTTTTGCTGAAGATACGAAACTTTTTTTTAAGGACTTCCGTCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTGCTGAAGATACGAAACTTTTTTTTAAGGACTTCCGTCTATG  750

seq1  AATCAAAATATTCCTCTGTTGTCTAAGCTTCTTGTCACAGTCACAAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATATTCCTCTGTTGTCTAAGCTTCTTGTCACAGTCACAAGATT  800

seq1  ATGTCCATGCCACACAGTCACTACAGGCATGTTTTCAGA-GCCTACACTA  849
      || | |||||||||||||||||||||||||||||||||| || |||||||
seq2  ATTTTCATGCCACACAGTCACTACAGGCATGTTTTCAGAGGCTTACACTA  850

seq1  TGGCGCACATAGCCTGTTTTAGGCATAAAGGAGGTGGTGACTAGGGAATC  899
      |||||||||||||||||||||||||| || |||||||||||||||  |||
seq2  TGGCGCACATAGCCTGTTTTAGGCATTAATGAGGTGGTGACTAGG--ATC  898

seq1  AGGAATTCGAGGCCAATTTGGACTAT  925
      ||||  |||||||||  || ||||||
seq2  AGGA--TCGAGGCCA--TTTGACTAT  920

seq1: chr1_137182080_137182316
seq2: B6Ng01-030K06.g_79_594

seq1  GGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAG  50
      ||||||||||| || ||||| ||||| |||||||||||||||||||||||
seq2  GGGCTGGAGAGATGACTCAGCGGTTAGGAGCACTGACTGCTCTTCCAGAG  50

seq1  GTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCACAACCATCAGTA  100
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  GTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTA  100

seq1  ATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAG-CTACAGTGTA  149
      |||||||| || ||||||||| |||||||||||||| || || |||    
seq2  ATGGGATCTGACGCCCTCTTCAGGTGTGTCTGAAGAAAGACTTCAG----  146

seq1  CTCATATAAATAAAATATATAAATCTTTAAAAAAAAAAAGAAAAGAAAGG  199
      |||||        || | | ||||   |  ||  | |||| |   |||||
seq2  CTCAT--------AAGACACAAAT-GATCCAATTAGAAAGCAGGTAAAGG  187

seq1  AAAGGAAAAGAAAT---------AGGGACCATGCAGGGACAGAGGAC---  237
      |   ||  ||| ||         || |   ||       ||||||     
seq2  ACCTGAGCAGACATTTCTTTTTAAGAGTTTATTTTTAACCAGAGGTGTCT  237

seq1  --------------------------------------------------  237
                                                        
seq2  GTTGGATTCATTGGATTTACAGGCTGTGGACCACCCAACATGGTTGCTGG  287

seq1  --------------------------------------------------  237
                                                        
seq2  GAATTGAGCCCAGGTCCTCTAAAAGAGCAGCAAGAGCTCTCAGCTGCTGA  337

seq1  --------------------------------------------------  237
                                                        
seq2  GTAGCCTCAGTCCCAGAGAAGATATACAAAGGGCTGATGATGGCACACAG  387

seq1  --------------------------------------------------  237
                                                        
seq2  AGACACCCCAACATCGTCTTTAGGAGGGTGCTAACCCAAACCGCACTGAG  437

seq1  --------------------------------------------------  237
                                                        
seq2  GCACTGTTTCACATGCTCCAGGATGGCTGAGATTTTTTTTAAAAAACCCT  487

seq1  -----------------------------  237
                                   
seq2  TAAAGTAAGAGGATGCAGGGACAGAGGAC  516