BAC Information

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BAC

Clone NameB6Ng01-030L06
Chromosome11 (Build37)5 (Build37)
Map Location 120,790,902 - 120,791,06052,336,321 - 52,337,350
singlet/doubletsingletsinglet
Overlap geneCcdc57
Upstream geneBaiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, LOC100043454
Downstream geneSlc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030L06.bB6Ng01-030L06.g
ACCDH860526DH860527
length8251,022
definitionDH860526|Mus musculus domesticus DNA, BAC clone: B6Ng01-030L06, 5' end.DH860527|Mus musculus domesticus DNA, BAC clone: B6Ng01-030L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,790,902 - 120,791,060)(52,336,321 - 52,337,350)
sequence
gaattcctttagctagaactaacccagaatcctcttccctattagatctc
atggtacagaaagtgccacttaagcttccaaagaagggaagcaactaata
gtcctacctagctatgatgtctatgagccacactcataaccagcatagta
caataatttaaggatgtagttgtggcacacataccttggtagtaaccaat
aactctttaattggacttccaagatccactcaaaaaagactggtactgga
aactgagtcaacaacacagggttggtgaagtcatagaattagaggagaac
ctacaactgctactgtactaaatgagaatctctaactatgttaaaaatat
ctgtccttaaaaccacagaaaagtatcattgtcacttctcaaaaagaaaa
cttctctttggaacagacggagaccgtaatagaaaaccacaaccaatcaa
atacagagtgatggtatccagccccaaaaaacacatcaacaaaacatttc
ccacatctaaggctcaggatcactgtagaacagtcagcagtttaagaagt
ttgctgtgagatgtgcctcctaggaatgtcaaagctatacccataaagtc
tcaccaacatgacagcctaaacatgaactaaacaaggacaaaaacagtgg
ggatgcccaagtggatgagggaaagaccaggaggcctcaactctatacaa
agaactacaggcaactaaggaatgataagaaagaaagaaagaaagaaaga
aagaagaagaaagaagaaagaaagaagaagaagaaaggaaggaaggaagg
aaggaagaaggaaggaagaagaaga
gaattcacttcagttgtgctacatcatgccttaactcaaggagaaagatg
ttacagttggcacattatcaatgaggaaaattgagagactaaagaagatg
acatgggagagagcagaaggccgtgacttgaattttgtaggacattcacc
agtaaagctgcaaggaagtggagggacaggatatgtcagtatctgggaga
gagacagaaactggaaagtcatggtcactgttcaggtgccctaggaagtt
aaacagaattaagagttgaggaaatagcccaggacttggtgcagatgaca
ctcttgatgtccctatggccagactgtctagtgaacacaagtatgtgctg
gggtctcagagtcctccccacatggaggaatgtctagtgagaaaacagac
agaatgctcattgcacatatgagagaaagaaggaaatcaaagcaccggct
tataaacacaacacctgaggttgtttgtttagagtggaaagagtgtctat
gaaggcaggtgcagaggggagaatgggaggctgacacagaagagaaatgc
aacaactcaggtggctggtgacagatgggcaatcttgggtgggagggcag
gaaggaaaatgtccagagaggagatgtaaaaccaggcttcaaataaggag
aggaatgtatagtgggcagaggggtggggcctccgacttcacagggcttg
cttttgtgctgagcagtagattccatggtatcatgtgcaacccatcagca
aaatggcttggggaatgaaaaagagggagagaggcttgccagggagtccc
tggggaacccgcctaaagaactcactggtgggttggtcctattgctagta
tgcaccgttgcttgacttaatttattcaggattttaaaaatagccatttc
tctcatcctgttggtgcatgtcttgctcccgtagagatgcttggtgatat
aaaaggaaatttgatttgcacttcgtagtcttccacatcctctctgcact
ctatgagttggaaatgcattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120790902_120791060
seq2: B6Ng01-030L06.b_772_869 (reverse)

seq1  TCTTCTGCTTCCTTCCTTCTTCCTTCCTTCCCTTTCTTTCACACCTCTCT  50
      |||||| ||||||||||||||||||||||||  ||| |||          
seq2  TCTTCTTCTTCCTTCCTTCTTCCTTCCTTCC--TTCCTTC----------  38

seq1  CTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT  100
                  || ||| | |                            
seq2  ------------CTTTCTTCTT----------------------------  48

seq1  CCCTCCCTCCCTTCTTTCTTTCTTTCTTTCT--TTCTTTCTTTCTTTCTT  148
                |||||||||||| ||||||||  |||||||||||||||||
seq2  ----------CTTCTTTCTTTC-TTCTTTCTTCTTCTTTCTTTCTTTCTT  87

seq1  TCTTTCTTTCT  159
      |||||||||||
seq2  TCTTTCTTTCT  98

seq1: chr5_52336321_52337350
seq2: B6Ng01-030L06.g_68_1089 (reverse)

seq1  TTAATGGCATTTCACACTCATAGAGTTGACAGGAAGAGGATGTGAAAGAC  50
      ||||| |||||||  |||||||||||   |||  |||||||||| |||||
seq2  TTAAT-GCATTTCCAACTCATAGAGT--GCAG--AGAGGATGTGGAAGAC  45

seq1  TAACGAAAGTGCAAATACAAATTTCCTTTTAATATCACC-AGCATTCTTC  99
      | ||| |||||||||| ||||||||||||| |||||||| |||||   ||
seq2  T-ACG-AAGTGCAAAT-CAAATTTCCTTTT-ATATCACCAAGCAT--CTC  89

seq1  TACGGGAGCAAGACATGCACCAACAGGATGAGAGAAATGGCTATTTTTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGAGCAAGACATGCACCAACAGGATGAGAGAAATGGCTATTTTTAA  139

seq1  AATCCTGAATAAA-TAAGTC-AGCAACGGTGCATACTAGCAATAGGACCA  197
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  AATCCTGAATAAATTAAGTCAAGCAACGGTGCATACTAGCAATAGGACCA  189

seq1  ACCCA-CAGTGAGTTCTTTTAGGCGGGTTCCCCAGGGACTCCCTGGCAAG  246
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCCACCAGTGAGTTC-TTTAGGCGGGTTCCCCAGGGACTCCCTGGCAAG  238

seq1  CCTCTCTCCCTCTTTTTCATTCCCCAAGCCATTTTGCTGATGGGTTGCAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCCTCTTTTTCATTCCCCAAGCCATTTTGCTGATGGGTTGCAC  288

seq1  CTGATACCATGGAATCTACTGCTCAGCACAAAAGCAAGCCCTGTGAAGTC  346
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCATGGAATCTACTGCTCAGCACAAAAGCAAGCCCTGTGAAGTC  338

seq1  GGAGGCCCCACCCCTCTGCCCACTATACATTCCTCTCCTTATTTGAAGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCCACCCCTCTGCCCACTATACATTCCTCTCCTTATTTGAAGCC  388

seq1  TGGTTTTACATCTCCTCTCTGGACATTTTCCTTCCTGCCCTCCCACCCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTACATCTCCTCTCTGGACATTTTCCTTCCTGCCCTCCCACCCAA  438

seq1  GATTGCCCATCTGTCACCAGCCACCTGAGTTGTTGCATTTCTCTTCTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCCATCTGTCACCAGCCACCTGAGTTGTTGCATTTCTCTTCTGTG  488

seq1  TCAGCCTCCCATTCTCCCCTCTGCACCTGCCTTCATAGACACTCTTTCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCCATTCTCCCCTCTGCACCTGCCTTCATAGACACTCTTTCCA  538

seq1  CTCTAAACAAACAACCTCAGGTGTTGTGTTTATAAGCCGGTGCTTTGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACAAACAACCTCAGGTGTTGTGTTTATAAGCCGGTGCTTTGATT  588

seq1  TCCTTCTTTCTCTCATATGTGCAATGAGCATTCTGTCTGTTTTCTCACTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTCTCTCATATGTGCAATGAGCATTCTGTCTGTTTTCTCACTA  638

seq1  GACATTCCTCCATGTGGGGAGGACTCTGAGACCCCAGCACATACTTGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCCTCCATGTGGGGAGGACTCTGAGACCCCAGCACATACTTGTGT  688

seq1  TCACTAGACAGTCTGGCCATAGGGACATCAAGAGTGTCATCTGCACCAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGACAGTCTGGCCATAGGGACATCAAGAGTGTCATCTGCACCAAG  738

seq1  TCCTGGGCTATTTCCTCAACTCTTAATTCTGTTTAACTTCCTAGGGCACC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTATTTCCTCAACTCTTAATTCTGTTTAACTTCCTAGGGCACC  788

seq1  TGAACAGTGACCATGACTTTCCAGTTTCTGTCTCTCTCCCAGATACTGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTGACCATGACTTTCCAGTTTCTGTCTCTCTCCCAGATACTGAC  838

seq1  ATATCCTGTCCCTCCACTTCCTTGCAGCTTTACTGGTGAATGTCCTACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGTCCCTCCACTTCCTTGCAGCTTTACTGGTGAATGTCCTACAA  888

seq1  AATTCAAGTCACGGCCTTCTGCTCTCTCCCATGTCATCTTCTTTAGTCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGTCACGGCCTTCTGCTCTCTCCCATGTCATCTTCTTTAGTCTC  938

seq1  TCAATTTTCCTCATTGATAATGTGCCAACTGTAACATCTTTCTCCTTGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCCTCATTGATAATGTGCCAACTGTAACATCTTTCTCCTTGAG  988

seq1  TTAAGGCATGATGTAGCACAACTGAAGTGAATTC  1030
      ||||||||||||||||||||||||||||||||||
seq2  TTAAGGCATGATGTAGCACAACTGAAGTGAATTC  1022