BAC Information

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BAC

Clone NameB6Ng01-030N20
Chromosome11 (Build37)
Map Location 4,877,595 - 5,018,561
singlet/doubletdoublet
Overlap geneAp1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
Upstream genePes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh
Downstream geneKremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030N20.bB6Ng01-030N20.g
ACCDH860641DH860642
length98958
definitionDH860641|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N20, 5' end.DH860642|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,877,595 - 4,877,692)(5,017,601 - 5,018,561)
sequence
attcctgtgtgtgtgtggtttttttcttttttttttcttttctttctttt
tctttttcttttttttgggggggtttgtttgtttgtttgtttgggatt
gaattcttatctagctaacttaggctggccttgaattcataacaggcaac
ccatgtgccttggcctccccaaagcttgggttacaggcatgcatcactag
acggtctagcctgaatcattctggttttaaagatttctttattgtgttat
atatacagtgttctgtaattcatgtgtgcttgcatgccagaagagggcgt
cggatcccatcacagatggctgtgagccaccatgtggttgctgggaactg
aactcaggacctctggaagagcaggcagtgctcttaaccactgagccatc
tctctaacctccccctcccccactgattcttttaaaacattcttttaggg
agctgaagaaatggctcagtggttaagtgcataactgctccctctgagga
cttgagttcagtttccagtacccattttagatggctcacagccacctgca
accccagctctggggcctctattggagtctacactcatgtgctcatagtc
tttaaaaaacagctttttaatctttaggaaatgtttaggtttttttattt
tatttactgttattgtgtatttagtgatgggagcatgtgtgaaagacagg
gcacagttcagctctctcctcccactgtgggttccgggacccacttggcc
aggtttgctgaaccatctcatggtccagaatatctgtcatagatatttta
ttaattttttacagcttctttttatgcatatgagtgttttgcctgcatgt
atgtctgtgcaccacatgcaagcctgcttgctgcctgcagaggtcggaag
agggtgtcagattccctgaaactggagttacagatggttgtggtctttca
tgtgggtgctgagattgaacttgggttccctgtgggagcatccagtgctc
ttagcactgaccatctctccagcccgaacatggatgtttaaattccttgt
ttcctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4877595_4877692
seq2: B6Ng01-030N20.b_45_142

seq1  ATTCCTGTGTGTGTGTGGTTTTTTTCTTTTTTTTTTCTTTTCTTTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTGTGTGTGTGGTTTTTTTCTTTTTTTTTTCTTTTCTTTCTTTT  50

seq1  TCTTTTTCTTTTTTTTGGGGGGGTTTGTTTGTTTGTTTGTTTGGGTTT  98
      ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTTTTCTTTTTTTTGGGGGGGTTTGTTTGTTTGTTTGTTTGGGATT  98

seq1: chr11_5017601_5018561
seq2: B6Ng01-030N20.g_68_1025 (reverse)

seq1  AGTAGGAGACAAGGAATTTAAACATCCATGTCGGGGCTGGAGAGATGGCT  50
      ||||||| |||||||||||||||||||||||  ||||||||||||||| |
seq2  AGTAGGAAACAAGGAATTTAAACATCCATGTTCGGGCTGGAGAGATGG-T  49

seq1  CAGTGCTTAAGAGCACTGGATGCTCCCACAGGGAACCCAAGTTCAATTCT  100
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGTGC-TAAGAGCACTGGATGCTCCCACAGGGAACCCAAGTTCAA-TCT  97

seq1  CAGCACCCACATGGAAGACCACAACCATCTGTAACTCCAGTTTCAGGGAA  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCACATGAAAGACCACAACCATCTGTAACTCCAGTTTCAGGGAA  147

seq1  TCTGACACCCTCTTCCGACCTCTGCAGGCAGCAAGCAGGCTTGCATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACCCTCTTCCGACCTCTGCAGGCAGCAAGCAGGCTTGCATGTGG  197

seq1  TGCACAGACATACATGCAGGCAAAACACTCATATGCATAAAAAGAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACATACATGCAGGCAAAACACTCATATGCATAAAAAGAAGCTG  247

seq1  TAAAAAATTAATAAAATATCTATGACAGATATTCTGGACCATGAGATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTAATAAAATATCTATGACAGATATTCTGGACCATGAGATGGT  297

seq1  TCAGCAAACCTGGCCAAGTGGGTCCCGGAACCCACAGTGGGAGGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAACCTGGCCAAGTGGGTCCCGGAACCCACAGTGGGAGGAGAGAG  347

seq1  CTGAACTGTGCCCTGTCTTTCACACATGCTCCCATCACTAAATACACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGTGCCCTGTCTTTCACACATGCTCCCATCACTAAATACACAAT  397

seq1  AACAGTAAATAAAATAAAAAAACCTAAACATTTCCTAAAGATTAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAATAAAATAAAAAAACCTAAACATTTCCTAAAGATTAAAAAGC  447

seq1  TGTTTTTTAAAGACTATGAGCACATGAGTGTAGACTCCAATAGAGGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTAAAGACTATGAGCACATGAGTGTAGACTCCAATAGAGGCCCC  497

seq1  AGAGCTGGGGTTGCAGGTGGCTGTGAGCCATCTAAAATGGGTACTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGGGTTGCAGGTGGCTGTGAGCCATCTAAAATGGGTACTGGAAA  547

seq1  CTGAACTCAAGTCCTCAGAGGGAGCAGTTATGCACTTAACCACTGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCAAGTCCTCAGAGGGAGCAGTTATGCACTTAACCACTGAGCCA  597

seq1  TTTCTTCAGCTCCCTAAAAGAATGTTTTAAAAGAATCAGTGGGGGAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAGCTCCCTAAAAGAATGTTTTAAAAGAATCAGTGGGGGAGGGG  647

seq1  GAGGTTAGAGAGATGGCTCAGTGGTTAAGAGCACTGCCTGCTCTTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGAGAGATGGCTCAGTGGTTAAGAGCACTGCCTGCTCTTCCAGA  697

seq1  GGTCCTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAGCCATCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAGCCATCTGT  747

seq1  GATGGGATCCGACGCCCTCTTCTGGCATGCAAGCACACATGAATTACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATCCGACGCCCTCTTCTGGCATGCAAGCACACATGAATTACAGA  797

seq1  ACACTGTATATATAACACAATAAAGAAATCTTTAAAACCAGAATGATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTATATATAACACAATAAAGAAATCTTTAAAACCAGAATGATTCA  847

seq1  GGCTAGACCGTCTAGTGATGCATGCCTGTAACCCAAGCTTTGGGGAGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGACCGTCTAGTGATGCATGCCTGTAACCCAAGCTTTGGGGAGGCC  897

seq1  AAGGCACATGGGTTGCCTGTTATGAATTCAAGGCCAGCCTAAGTTAGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACATGGGTTGCCTGTTATGAATTCAAGGCCAGCCTAAGTTAGCTA  947

seq1  GATAAGAATTC  961
      |||||||||||
seq2  GATAAGAATTC  958