BAC Information

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BAC

Clone NameB6Ng01-031C12
Chromosome11 (Build37)
Map Location 116,764,417 - 116,920,222
singlet/doubletdoublet
Overlap geneMgat5b, LOC100042036
Upstream geneRecql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11
Downstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031C12.bB6Ng01-031C12.g
ACCDH860851DH860852
length9941,023
definitionDH860851|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C12, 5' end.DH860852|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,919,571 - 116,920,222)(116,764,417 - 116,765,443)
sequence
gaattctttccttggggaactgtaaacaatgtctacccctcttctaaggt
ccccacaacaaactgaagcatgagtccaccagagatccccatgggggagc
catgagtccagcagagatgtcaggtgtctggggactggccctgggatgtg
tcctgcatgtatcagggacgtcactgtctttctggggtgggtaattaagg
agctccgtgtggtgattaaaggcacacatccttcaaaggtaggagcagac
caaccttatgtggaagtcccaaagcagatatgcttggctgtgactaaggc
tgaggaaacccacgtggggcacaggtcagggctggagaacactgcaggag
atgagagctttcactttgagggctggtgccgggggaaccactttctcaaa
aggtgcatcgctggtgtagatgaggcggttctacatcataggtacatcag
tggacggagagaaccaactcctgcaaggtatcctacacacacacacacac
acacagacacacacacgcatgcacacatcccactaaataagtgttaaaaa
aaacataaacaagatatgtccggttctaacccctgattcctgagagtggg
accttatttggagaagatggagtcatttgcaggtggagtcaagctaaggg
gagggtctcagggtttctactgctgtgataaaacaccatgatcaaagcaa
cttggggaagaaggggttatgttggcttatacatccacattattattcat
cactgaaggaagccaggacaggaactcagagagggcatgaacctggaggc
aggagctgatgcagaggccatggagggagctgcttactggcttgttcatg
gtggctttctcagcttgctttcttatagaacccagggccaccagctcagg
gatggcaacacccacactgggctggaacttccccatcaatcactaattat
aaaatgccttacagctggatctatggggcattttctcattaaag
gaattctactttggcttcttctcaggaccttaggaggagggggagatgtt
tacatctttccagggaagggattctcccagcagtcactgtcaaatgtctc
atcccgaatgctcctgggccaaggcaggaggcaccacactgaccgtgcac
agcaaaggattggtccctcagaaggaagaacatcaaatgtactttgtaga
gcagatgaagttgacacctcaccaggaaggtctactggacaggatggaat
ttattatggcttgaaaatgggttaggtcacctgtccttctcgtcccttaa
cagtgtgattgctatcacaactggcgatccagagatggggagagagccgt
gagcaacccaggatctcaccggagatggtcatgttagccatctccacccg
gcagcaggccaaatgaacacccccgaagaaaagcattttggacctggatg
cccccggagttggttgggtcctcacttttgctgtccacaaagcctgggtt
tggttccccagcactggtttccaaacagggggggtaggcacatgaccgtg
ttaggctcaaaatcccatagagctgtgcacttctttaacgctgctgattt
tacctcaataaaagaaagaaatgagaagagattctgagccccagctcagc
atgaagcacctgggtagccattggctcccctagagagacgggagtgttgg
ctgtcccagctacctgcattcagccatttgcctctattctatccagtcag
cacctagctctcctagattccagagactgtgggggggctgtcaacagtgt
acactgccaccgtgcaaattaaatgtgacagacggcacacacctaaccgg
caatcaaccaaaatagcacttggggcaaactccagacaatgcctgacaaa
taactgtgtttcaggattgtgcagcaacagcgagttctgctattaacttc
tggcgtctggtgtctcaaggatgtgagctcaagtggactgtgccaaaggg
agtgtcagtcccctggtgagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116919571_116920222
seq2: B6Ng01-031C12.b_46_697 (reverse)

seq1  TCCCCTTAGCTTGACTCCACCTGCAAATGACTCCATCTTCTCCAAATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTAGCTTGACTCCACCTGCAAATGACTCCATCTTCTCCAAATAAG  50

seq1  GTCCCACTCTCAGGAATCAGGGGTTAGAACCGGACATATCTTGTTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACTCTCAGGAATCAGGGGTTAGAACCGGACATATCTTGTTTATGT  100

seq1  TTTTTTTAACACTTATTTAGTGGGATGTGTGCATGCGTGTGTGTGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACACTTATTTAGTGGGATGTGTGCATGCGTGTGTGTGTCTGT  150

seq1  GTGTGTGTGTGTGTGTGTAGGATACCTTGCAGGAGTTGGTTCTCTCCGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTAGGATACCTTGCAGGAGTTGGTTCTCTCCGTC  200

seq1  CACTGATGTACCTATGATGTAGAACCGCCTCATCTACACCAGCGATGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGTACCTATGATGTAGAACCGCCTCATCTACACCAGCGATGCAC  250

seq1  CTTTTGAGAAAGTGGTTCCCCCGGCACCAGCCCTCAAAGTGAAAGCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGAAAGTGGTTCCCCCGGCACCAGCCCTCAAAGTGAAAGCTCTC  300

seq1  ATCTCCTGCAGTGTTCTCCAGCCCTGACCTGTGCCCCACGTGGGTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGCAGTGTTCTCCAGCCCTGACCTGTGCCCCACGTGGGTTTCCT  350

seq1  CAGCCTTAGTCACAGCCAAGCATATCTGCTTTGGGACTTCCACATAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTAGTCACAGCCAAGCATATCTGCTTTGGGACTTCCACATAAGGT  400

seq1  TGGTCTGCTCCTACCTTTGAAGGATGTGTGCCTTTAATCACCACACGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCTCCTACCTTTGAAGGATGTGTGCCTTTAATCACCACACGGAG  450

seq1  CTCCTTAATTACCCACCCCAGAAAGACAGTGACGTCCCTGATACATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAATTACCCACCCCAGAAAGACAGTGACGTCCCTGATACATGCAG  500

seq1  GACACATCCCAGGGCCAGTCCCCAGACACCTGACATCTCTGCTGGACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCCCAGGGCCAGTCCCCAGACACCTGACATCTCTGCTGGACTCA  550

seq1  TGGCTCCCCCATGGGGATCTCTGGTGGACTCATGCTTCAGTTTGTTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCCCATGGGGATCTCTGGTGGACTCATGCTTCAGTTTGTTGTGG  600

seq1  GGACCTTAGAAGAGGGGTAGACATTGTTTACAGTTCCCCAAGGAAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTAGAAGAGGGGTAGACATTGTTTACAGTTCCCCAAGGAAAGAAT  650

seq1  TC  652
      ||
seq2  TC  652

seq1: chr11_116764417_116765443
seq2: B6Ng01-031C12.g_65_1087

seq1  GAATTCTACTTTGGCTTCTTCTCAGGACCTTAGGAGGAGGGGGAGATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTTGGCTTCTTCTCAGGACCTTAGGAGGAGGGGGAGATGTT  50

seq1  TACATCTTTCCAGGGAAGGGATTCTCCCAGCAGTCACTGTCAAATGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTTCCAGGGAAGGGATTCTCCCAGCAGTCACTGTCAAATGTCTC  100

seq1  ATCCCGAATGCTCCTGGGCCAAGGCAGGAGGCACCACACTGACCGTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGAATGCTCCTGGGCCAAGGCAGGAGGCACCACACTGACCGTGCAC  150

seq1  AGCAAAGGATTGGTCCCTCAGAAGGAAGAACATCAAATGTACTTTGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGATTGGTCCCTCAGAAGGAAGAACATCAAATGTACTTTGTAGA  200

seq1  GCAGATGAAGTTGACACCTCACCAGGAAGGTCTACTGGACAGGATGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAAGTTGACACCTCACCAGGAAGGTCTACTGGACAGGATGGAAT  250

seq1  TTATTATGGCTTGAAAATGGGTTAGGTCACCTGTCCTTCTCGTCCCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGGCTTGAAAATGGGTTAGGTCACCTGTCCTTCTCGTCCCTTAA  300

seq1  CAGTGTGATTGCTATCACAACTGGCGATCCAGAGATGGGGAGAGAGCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGATTGCTATCACAACTGGCGATCCAGAGATGGGGAGAGAGCCGT  350

seq1  GAGCAACCCAGGATCTCACCGGAGATGGTCATGTTAGCCATCTCCACCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACCCAGGATCTCACCGGAGATGGTCATGTTAGCCATCTCCACCCG  400

seq1  GCAGCAGGCCAAATGAACACCCCCGAAGAAAAGCATTTTGGACCTGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGCCAAATGAACACCCCCGAAGAAAAGCATTTTGGACCTGGATG  450

seq1  CCCCCGGAGTTGGTTGGGTCCTCACTTTTGCTGTCCACAAAGCCTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGGAGTTGGTTGGGTCCTCACTTTTGCTGTCCACAAAGCCTGGGTT  500

seq1  TGGTTCCCCAGCACTGGTTTCCAAACAGGGGGGGTAGGCACATGACCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCCAGCACTGGTTTCCAAACAGGGGGGGTAGGCACATGACCGTG  550

seq1  TTAGGCTCAAAATCCCATAGAGCTGTGCACTTCTTTAACGCTGCTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTCAAAATCCCATAGAGCTGTGCACTTCTTTAACGCTGCTGATTT  600

seq1  TACCTCAATAAAAGAAAGAAATGAGAAGAGATTCTGAGCCCCAGCTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAATAAAAGAAAGAAATGAGAAGAGATTCTGAGCCCCAGCTCAGC  650

seq1  ATGAAGCACCTGGGTAGCCATTGGCTCCCCTAGAGAGACGGGAGTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCACCTGGGTAGCCATTGGCTCCCCTAGAGAGACGGGAGTGTTGG  700

seq1  CTGTCCCAGCTACCTGCATTCAGCCATTTGCCTCTATTCTATCCAGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCAGCTACCTGCATTCAGCCATTTGCCTCTATTCTATCCAGTCAG  750

seq1  CACCTAGCTCTCCTAGATTCCAGAGACTGTGGGGGGGCTGTCAACAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGCTCTCCTAGATTCCAGAGACTGTGGGGGGGCTGTCAACAGTGT  800

seq1  ACACTGCCACCGTGCAAATTAAATGTGACAGACGGCACACACCTAACCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCACCGTGCAAATTAAATGTGACAGACGGCACACACCTAACCGG  850

seq1  CAATCAACCAAAATAGCACTTGGGGCAAACTCCAGACAATGCCTGACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAACCAAAATAGCACTTGGGGCAAACTCCAGACAATGCCTGACAAA  900

seq1  TAACTGTGTTTTCAGAATGTGCAGCCAACAGCGAGGTCTGCTATTAACCT  950
      |||||||||||   || ||||||| |||||||||| |||||||||||| |
seq2  TAACTGTGTTTCAGGATTGTGCAG-CAACAGCGAGTTCTGCTATTAACTT  949

seq1  CTGGCGTCTGGTGTCTCAAGGATGTGAGGCTTCAAGTGGACTGTG-CAGA  999
      ||||||||||||||||||||||||||||   |||||||||||||| || |
seq2  CTGGCGTCTGGTGTCTCAAGGATGTGAG--CTCAAGTGGACTGTGCCAAA  997

seq1  GGGAGGTGTCAGGTCCCCTGGGGAGCCA  1027
      |||| |||||| ||||||||| ||||||
seq2  GGGA-GTGTCA-GTCCCCTGGTGAGCCA  1023