BAC Information

Click to search

BAC

Clone NameB6Ng01-031E05
Chromosome11 (Build37)
Map Location 51,255,391 - 51,422,051
singlet/doubletdoublet
Overlap geneCol23a1, Agxt2l2, Hnrpab
Upstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneNola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031E05.bB6Ng01-031E05.g
ACCDH860931DH860932
length1,054949
definitionDH860931|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E05, 5' end.DH860932|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,420,988 - 51,422,051)(51,255,391 - 51,256,341)
sequence
gaattccaggacagccagggatgtgtagaaagaccttgtctcaaaaataa
aataaaagcagggtgtgatggcgcacgcctttaatcccagcactcgggag
gcagaggcaggcagatttctaagttcgaggccagcctggtctacagagtg
agttccaggacagccaaggctacacagagaaaccctgtctcgaaaaacca
aaaaaaaaaaaagtcaagaggcaagaggttctggatctggagagggttca
gtgggccacgtgggcacaagcatgaggacctgagttcaggactccagtgc
ccacagctgaacaggggagcacaaatctaacttcagcttactccatcaat
gtgggaggagacagagaatctccaaagcttgtgagaccatttgcctggag
gccagcctggtctacaaagtgagtttcaggacagccagggctatacagag
aaaccctgtctcaaaaaaaaaaatctatatatatctctatctatctatct
atctatctatatccatccatccattggatgactcacacctttaattccag
cacttagaaggcaggcaggcagttttctgtgacttcaagaccagcctagg
tctaaaaatgaagttgtgggccagctagtttgtttaaaggaaaaaaaaat
tataaagaacaaaatggaaagtgaagattgataccttgtctgatttacac
actcagggcatagaacttacactcaacacaaacgtatgcacacatacaca
ggaatcatggcctaacccaggcctttaaagttttatggtcaatgcttaaa
agaaaactacccctctttaccataacctcatttaacagggctatttttcc
aaaagcaagttgtcagactaggcagggtgacacatgtctgtaatcatatc
ctggggctacatgaaaagactcttattttcatttaggatcatctaaaatc
agtgaaattagctagcacagtggtgtgcagcacataattcagcactgaag
gggggtgaaatggagggtcagagttcaaggcagtcggaggatacaaactt
ggtc
gaattctccttaagagggacggggtttcgttttctctctctcttgcttct
tgctctcttgcttcttgcactctggctcctgaagatgtaagcaataaagt
tttgctgcagaagattttggtctgtggtgttcttcctggccggtcgtgag
aacgcgtctaataacacgtcctgaccaagcaaccagtgaaaagcaatgga
gccaagtcaagtgacactcctgcaagacagtccctaagaggctcaaagag
cagacagactgatctgagtatgtaggggccacagttaatggttgacctat
aactatgacagagatcagtgtgttcctagccacatgagcacagagtctgc
agcccagccgctgtcactcacccagtaaggcaggcccatccccaggccac
ttgagtggtttgaaagacagatgtccaccacagtctcaggtcttcgaatg
cttggctcccaggtgatggcactcttttagggaggcttagaagaagtggc
cttgtgtgtgtcactgggggcaagctttaagaactcaaagatccaagcta
tttctagtttgctctgtctgcttcctgcttgcggctgaagatgtgagctc
tcagcctgctgctccagccaccatgtcccgtccccttccctgccaagatg
gcctcttacccttgagacaaactcttccttctgtaaattacccagtgttt
tatcacagccatagaaaagtaatggatccttcactagagggcttgttaag
gtcggtggtggggagaattgtgattgtaccaagcaaggggccaggcttgt
gtgcggattttaactctttcccatccaggtcagaggcggaatcttaatag
cctaactgactggagtgaaggaacagctgtcatgtaacccaggctggcag
cagctgtcgtgtgcatcataacactgtgccaatctcaccgcactgaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51420988_51422051
seq2: B6Ng01-031E05.b_43_1096 (reverse)

seq1  GACCAAGTCTGGTATCCTCCGACTGGCCTTGAACTCTTGACCCTCCATTT  50
      |||||||| | ||||||||||||| ||||||||||| |||||||||| ||
seq2  GACCAAGT-TTGTATCCTCCGACT-GCCTTGAACTC-TGACCCTCCA-TT  46

seq1  TCACCCCC--TCAGTGCTGGAATTATGTGCTGCACCACCACTGTGCCTAG  98
      ||||||||  |||||||| ||||||||||||||| |||||||||| ||||
seq2  TCACCCCCCTTCAGTGCT-GAATTATGTGCTGCA-CACCACTGTG-CTAG  93

seq1  CTTAATTTCACTGATTTTTAGATGATCCTAAATGGAAAAATTAAGAGTCT  148
      | |||||||||||| |||||||||||||||||||   ||| |||||||||
seq2  C-TAATTTCACTGA-TTTTAGATGATCCTAAATG---AAAATAAGAGTCT  138

seq1  TTTCATGTAGCCCCAGGATATGATTACAGACATGTGTCACCCTGCCTAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTAGCCCCAGGATATGATTACAGACATGTGTCACCCTGCCTAGT  188

seq1  CTGACAACTTGCTTTTGGAAAAATAGCCCTGTTAAATGAGGTTATGGTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACTTGCTTTTGGAAAAATAGCCCTGTTAAATGAGGTTATGGTAA  238

seq1  AGAGGGGTAGTTTTCTTTTAAGCATTGACCATAAAACTTTAAAGGCCTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTAGTTTTCTTTTAAGCATTGACCATAAAACTTTAAAGGCCTGG  288

seq1  GTTAGGCCATGATTCCTGTGTATGTGTGCATACGTTTGTGTTGAGTGTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCCATGATTCCTGTGTATGTGTGCATACGTTTGTGTTGAGTGTAA  338

seq1  GTTCTATGCCCTGAGTGTGTAAATCAGACAAGGTATCAATCTTCACTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGCCCTGAGTGTGTAAATCAGACAAGGTATCAATCTTCACTTTC  388

seq1  CATTTTGTTCTTTATAATTTTTTTTTCCTTTAAACAAACTAGCTGGCCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTCTTTATAATTTTTTTTTCCTTTAAACAAACTAGCTGGCCCA  438

seq1  CAACTTCATTTTTAGACCTAGGCTGGTCTTGAAGTCACAGAAAACTGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCATTTTTAGACCTAGGCTGGTCTTGAAGTCACAGAAAACTGCCT  488

seq1  GCCTGCCTTCTAAGTGCTGGAATTAAAGGTGTGAGTCATCCAATGGATGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTTCTAAGTGCTGGAATTAAAGGTGTGAGTCATCCAATGGATGG  538

seq1  ATGGATATAGATAGATAGATAGATAGATAGAGATATATATAGATTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATAGATAGATAGATAGATAGATAGAGATATATATAGATTTTTTT  588

seq1  TTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGAAACTCACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGAAACTCACTT  638

seq1  TGTAGACCAGGCTGGCCTCCAGGCAAATGGTCTCACAAGCTTTGGAGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCCAGGCAAATGGTCTCACAAGCTTTGGAGATT  688

seq1  CTCTGTCTCCTCCCACATTGATGGAGTAAGCTGAAGTTAGATTTGTGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCCTCCCACATTGATGGAGTAAGCTGAAGTTAGATTTGTGCTC  738

seq1  CCCTGTTCAGCTGTGGGCACTGGAGTCCTGAACTCAGGTCCTCATGCTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCAGCTGTGGGCACTGGAGTCCTGAACTCAGGTCCTCATGCTTG  788

seq1  TGCCCACGTGGCCCACTGAACCCTCTCCAGATCCAGAACCTCTTGCCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACGTGGCCCACTGAACCCTCTCCAGATCCAGAACCTCTTGCCTCT  838

seq1  TGACTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCT  888

seq1  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTTAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTTAGAA  938

seq1  ATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCATC  988

seq1  ACACCCTGCTTTTATTTTATTTTTGAGACAAGGTCTTTCTACACATCCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGCTTTTATTTTATTTTTGAGACAAGGTCTTTCTACACATCCCT  1038

seq1  GGCTGTCCTGGAATTC  1064
      ||||||||||||||||
seq2  GGCTGTCCTGGAATTC  1054

seq1: chr11_51255391_51256341
seq2: B6Ng01-031E05.g_67_1015

seq1  GAATTCTCCTTAAGAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAAGAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCT  50

seq1  TGCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGT  100

seq1  TTTGCTGCAGAAGATTTTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCAGAAGATTTTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAG  150

seq1  AACGCGTCTAATAACACGTCCTGACCAAGCAACCAGTGAAAAGCAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGTCTAATAACACGTCCTGACCAAGCAACCAGTGAAAAGCAATGGA  200

seq1  GCCAAGTCAAGTGACACTCCTGCAAGACAGTCCCTAAGAGGCTCAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCAAGTGACACTCCTGCAAGACAGTCCCTAAGAGGCTCAAAGAG  250

seq1  CAGACAGACTGATCTGAGTATGTAGGGGCCACAGTTAATGGTTGACCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACTGATCTGAGTATGTAGGGGCCACAGTTAATGGTTGACCTAT  300

seq1  AACTATGACAGAGATCAGTGTGTTCCTAGCCACATGAGCACAGAGTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGACAGAGATCAGTGTGTTCCTAGCCACATGAGCACAGAGTCTGC  350

seq1  AGCCCAGCCGCTGTCACTCACCCAGTAAGGCAGGCCCATCCCCAGGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCCGCTGTCACTCACCCAGTAAGGCAGGCCCATCCCCAGGCCAC  400

seq1  TTGAGTGGTTTGAAAGACAGATGTCCACCACAGTCTCAGGTCTTCGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGGTTTGAAAGACAGATGTCCACCACAGTCTCAGGTCTTCGAATG  450

seq1  CTTGGCTCCCAGGTGATGGCACTCTTTTAGGGAGGCTTAGAAGAAGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCCCAGGTGATGGCACTCTTTTAGGGAGGCTTAGAAGAAGTGGC  500

seq1  CTTGTGTGTGTCACTGGGGGCAAGCTTTAAGAACTCAAAGATCCAAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTGTCACTGGGGGCAAGCTTTAAGAACTCAAAGATCCAAGCTA  550

seq1  TTTCTAGTTTGCTCTGTCTGCTTCCTGCTTGCGGCTGAAGATGTGAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTTTGCTCTGTCTGCTTCCTGCTTGCGGCTGAAGATGTGAGCTC  600

seq1  TCAGCCTGCTGCTCCAGCCACCATGTCCCGTCCCCTTCCCTGCCAAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGCTGCTCCAGCCACCATGTCCCGTCCCCTTCCCTGCCAAGATG  650

seq1  GCCTCTTACCCTTGAGACAAACTCTTCCTTCTGTAAATTACCCAGTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTACCCTTGAGACAAACTCTTCCTTCTGTAAATTACCCAGTGTTT  700

seq1  TATCACAGCCATAGAAAAGTAATGGATCCTTCACTAGAGGGCTTGTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGCCATAGAAAAGTAATGGATCCTTCACTAGAGGGCTTGTTAAG  750

seq1  GTCGGTGGTGGGGAGAATTGTGATTGTACCAAGCAGGGGGCCAGGCTGGT  800
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  GTCGGTGGTGGGGAGAATTGTGATTGTACCAAGCAAGGGGCCAGGCTTGT  800

seq1  GTGCGGATTTTAACTCTTTCCCATCCAGGTCAGAGGCGGAATCTAAATAG  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGCGGATTTTAACTCTTTCCCATCCAGGTCAGAGGCGGAATCTTAATAG  850

seq1  CCTAACTGACTGGAGTGAAGGAAGCAGCTGTCATGTAACCCAGGCTGGCA  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTAACTGACTGGAGTGAAGGAA-CAGCTGTCATGTAACCCAGGCTGGCA  899

seq1  GCAGCTGTCGTGTGGCACCA-AACACCTGTGCCAATCTCACCGCACTGAA  949
      ||||||||||||| ||| || |||| ||||||||||||||||||||||||
seq2  GCAGCTGTCGTGT-GCATCATAACA-CTGTGCCAATCTCACCGCACTGAA  947

seq1  CC  951
      ||
seq2  CC  949