BAC Information

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BAC

Clone NameB6Ng01-031G06
Chromosome11 (Build37)
Map Location 66,190,879 - 66,317,942
singlet/doubletdoublet
Overlap geneGm879
Upstream geneMap2k4, Zkscan6, Dnahc9
Downstream geneLOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031G06.bB6Ng01-031G06.g
ACCDH861017DH861018
length1,0461,051
definitionDH861017|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G06, 5' end.DH861018|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,316,881 - 66,317,942)(66,190,879 - 66,191,934)
sequence
gaattcagttttagaatcaggagagatcttaaagcttgtctttgtataaa
cctagtgcttcactgatggggaaaattattaaaattctgtgtcaaagatt
aagatctgctgaaagtctgtgactggtcagtggcagagctgagagacctt
ttctgtgactttctgggacattgccttccttcttctcaggccacaaatga
tggctctccagattggccctggatcttaggctagctgagcttccttcaca
gggtacttagctttggttcctgctgccagttcagcagagtgagtgtggtg
ggtggcaagtgtctgctcttcctttgacaggctgagagaacagaaggtca
gctaggggaaagctcttgaaaatgtgaacttgctgtatatgtgccactaa
ttgataagattgccaacttggtgctcttcaaggcaggttcactgtgtcaa
cggcagcacagcagaagggaacgatttgcttaggtacatctaaggggccg
tggttgtcactttccaggaagatggagctctggagctggacattgggata
atggaagctatgggaaggctgggatatctcaaatggaagagactttgaag
gctggtgccttagggagatgctgagaaaacagaagggtttatgccccctt
tgtgcaaaacttgaggcatagagctttaccaggaacgggtgtgacactga
gaaggggtgctctgtggtggcttgccacactcttctgctgctccctttga
tcattcccaatgtctctctttcctagagccagtgggtagctcgtgtcaca
cataatgaggcattcatctgtaaaacctggtggcagaggaacttgcttta
atttgtgagtcaccagaggacaggactaggcacctttccactcatccctg
gagcgactgatgcctgctgagtccccactacatgcacgttggaagctgaa
gcttgtgtgatcagtcagcagagctcttgtcccgagtctccactctgcag
ttcttgtgtccttcccatcgtactgcctcctcctcccaaatgtgtt
gaattctgaaaagttcagatgctcagacaagcttcacacattctgactca
gaaagagtccagtgaattggacgtattttaaaatcagctcctttggccag
tactgacacccactgccctccttaagacaaatagaaacaacccaaggtca
aacacttatgtgaacagggaaagtcactgaccattttctggggcccctgc
aggtgctgtatatattcagggccctgacacacttcctctggaaaggaaac
cctgtcctcagccccttccttcttatcccagttcgtaaacctgagcatga
tcagaatactggaaacaatttaaatagatggattcagcagacacgagata
gaaattaggatcttgcaattctatcagggttcctggttccggattaacaa
agtcatgggaatcctgcatgaggtccattggctctgaaacatattacgtc
attcactcttcagcttttcacaggggacattcttgttggagaactgtagt
aaggattcatacctgcatagccctgcctgcacttaagtgaagtcttctgc
ccaaatctcaagctgtgtgacagctgctagcagctggacaagccatcttt
ctcaagaggagaagggaggcatggaaaaggtccatgcaaccaaccaaagg
cgcaccgggaccctctcttccgtaacaagcacaattgttcccttattcca
tcgtagacaggaggaaacaatccagagccctcataaatttggacctcatt
aattcagaacctgtgaggcatcctgcagaatttgggctgctttatttttg
tgctccttataaataaaaattttgataaacaaatcaatactaagaagatg
gaacattaaacagagcctgttgctgtttacaaatcactctcactgtcaga
agaacaaggtccctcaagactaagcattactctggtgctctggggctttg
cctgtctgagagagacagccgcttctgatctgcagccagcagagagatga
gactccctgcagcttgggtttgactaacaacagatgacctttatagactg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_66316881_66317942
seq2: B6Ng01-031G06.b_44_1089 (reverse)

seq1  AACACATTTTTGAGGAGGAGGAGGCATGTACGAATGGGAAGGGACACAAA  50
      |||||||||    ||||||||||||| ||||| ||||||| |||||||| 
seq2  AACACATTT---GGGAGGAGGAGGCA-GTACG-ATGGGAA-GGACACAA-  43

seq1  GAAACTGCCAGAGTGGAGACTCGGGAACAAGAGCTCTGGCTTGACTGATT  100
        ||||| ||||||||||||||||| ||||||||||||   ||||||| |
seq2  -GAACTG-CAGAGTGGAGACTCGGG-ACAAGAGCTCTG--CTGACTGA-T  87

seq1  CACACCAAGCTTCAGCTTCCAAACGTGCATGTAGTGGGGACTCAGCAGGC  150
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACA-CAAGCTTCAGCTTCC-AACGTGCATGTAGTGGGGACTCAGCAGGC  135

seq1  ATCAGTCGCTCCAGGGATGAGTGGAAAGGTGCCTAGTCCTGTCCTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCGCTCCAGGGATGAGTGGAAAGGTGCCTAGTCCTGTCCTCTGGT  185

seq1  GACTCACAAATTAAAGCAAGTTCCTCTGCCACCAGGTTTTACAGATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACAAATTAAAGCAAGTTCCTCTGCCACCAGGTTTTACAGATGAAT  235

seq1  GCCTCATTATGTGTGACACGAGCTACCCACTGGCTCTAGGAAAGAGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTATGTGTGACACGAGCTACCCACTGGCTCTAGGAAAGAGAGAC  285

seq1  ATTGGGGAATGATCAAAGGGAGCAGCAGAAGAGTGTGGCAAGCCACCACA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATT-GGGAATGATCAAAGGGAGCAGCAGAAGAGTGTGGCAAGCCACCACA  334

seq1  GAGCACCCCTTCTCAGTGTCACACCCGTTCCTGGTAAAGCTCTATGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCCCTTCTCAGTGTCACACCCGTTCCTGGTAAAGCTCTATGCCTC  384

seq1  AAGTTTTGCACAAAGGGGGCATAAACCCTTCTGTTTTCTCAGCATCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGCACAAAGGGGGCATAAACCCTTCTGTTTTCTCAGCATCTCCC  434

seq1  TAAGGCACCAGCCTTCAAAGTCTCTTCCATTTGAGATATCCCAGCCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCACCAGCCTTCAAAGTCTCTTCCATTTGAGATATCCCAGCCTTCC  484

seq1  CATAGCTTCCATTATCCCAATGTCCAGCTCCAGAGCTCCATCTTCCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTCCATTATCCCAATGTCCAGCTCCAGAGCTCCATCTTCCTGGA  534

seq1  AAGTGACAACCACGGCCCCTTAGATGTACCTAAGCAAATCGTTCCCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAACCACGGCCCCTTAGATGTACCTAAGCAAATCGTTCCCTTCT  584

seq1  GCTGTGCTGCCGTTGACACAGTGAACCTGCCTTGAAGAGCACCAAGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTGCCGTTGACACAGTGAACCTGCCTTGAAGAGCACCAAGTTGG  634

seq1  CAATCTTATCAATTAGTGGCACATATACAGCAAGTTCACATTTTCAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTATCAATTAGTGGCACATATACAGCAAGTTCACATTTTCAAGAG  684

seq1  CTTTCCCCTAGCTGACCTTCTGTTCTCTCAGCCTGTCAAAGGAAGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCTAGCTGACCTTCTGTTCTCTCAGCCTGTCAAAGGAAGAGCAG  734

seq1  ACACTTGCCACCCACCACACTCACTCTGCTGAACTGGCAGCAGGAACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCCACCCACCACACTCACTCTGCTGAACTGGCAGCAGGAACCAA  784

seq1  AGCTAAGTACCCTGTGAAGGAAGCTCAGCTAGCCTAAGATCCAGGGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTACCCTGTGAAGGAAGCTCAGCTAGCCTAAGATCCAGGGCCAA  834

seq1  TCTGGAGAGCCATCATTTGTGGCCTGAGAAGAAGGAAGGCAATGTCCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGCCATCATTTGTGGCCTGAGAAGAAGGAAGGCAATGTCCCAG  884

seq1  AAAGTCACAGAAAAGGTCTCTCAGCTCTGCCACTGACCAGTCACAGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACAGAAAAGGTCTCTCAGCTCTGCCACTGACCAGTCACAGACTT  934

seq1  TCAGCAGATCTTAATCTTTGACACAGAATTTTAATAATTTTCCCCATCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGATCTTAATCTTTGACACAGAATTTTAATAATTTTCCCCATCAG  984

seq1  TGAAGCACTAGGTTTATACAAAGACAAGCTTTAAGATCTCTCCTGATTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACTAGGTTTATACAAAGACAAGCTTTAAGATCTCTCCTGATTCT  1034

seq1  AAAACTGAATTC  1062
      ||||||||||||
seq2  AAAACTGAATTC  1046

seq1: chr11_66190879_66191934
seq2: B6Ng01-031G06.g_67_1112

seq1  GAATTCTGAAAAGTTCAGATGCTCAGACAAGCTTCACACATTCTGACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAAGTTCAGATGCTCAGACAAGCTTCACACATTCTGACTCA  50

seq1  GAAAGAGTCCAGTGAATTGGACGTATTTTAAAATCAGCTCCTTTGGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTCCAGTGAATTGGACGTATTTTAAAATCAGCTCCTTTGGCCAG  100

seq1  TACTGACACCCACTGCCCTCCTTAAGACAAATAGAAACAACCCAAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACACCCACTGCCCTCCTTAAGACAAATAGAAACAACCCAAGGTCA  150

seq1  AACACTTATGTGAACAGGGAAAGTCACTGACCATTTTCTGGGGCCCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTATGTGAACAGGGAAAGTCACTGACCATTTTCTGGGGCCCCTGC  200

seq1  AGGTGCTGTATATATTCAGGGCCCTGACACACTTCCTCTGGAAAGGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGTATATATTCAGGGCCCTGACACACTTCCTCTGGAAAGGAAAC  250

seq1  CCTGTCCTCAGCCCCTTCCTTCTTATCCCAGTTCGTAAACCTGAGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTCAGCCCCTTCCTTCTTATCCCAGTTCGTAAACCTGAGCATGA  300

seq1  TCAGAATACTGGAAACAATTTAAATAGATGGATTCAGCAGACACGAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATACTGGAAACAATTTAAATAGATGGATTCAGCAGACACGAGATA  350

seq1  GAAATTAGGATCTTGCAATTCTATCAGGGTTCCTGGTTCCGGATTAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGGATCTTGCAATTCTATCAGGGTTCCTGGTTCCGGATTAACAA  400

seq1  AGTCATGGGAATCCTGCATGAGGTCCATTGGCTCTGAAACATATTACGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGGAATCCTGCATGAGGTCCATTGGCTCTGAAACATATTACGTC  450

seq1  ATTCACTCTTCAGCTTTTCACAGGGGACATTCTTGTTGGAGAACTGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCTTCAGCTTTTCACAGGGGACATTCTTGTTGGAGAACTGTAGT  500

seq1  AAGGATTCATACCTGCATAGCCCTGCCTGCACTTAAGTGAAGTCTTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCATACCTGCATAGCCCTGCCTGCACTTAAGTGAAGTCTTCTGC  550

seq1  CCAAATCTCAAGCTGTGTGACAGCTGCTAGCAGCTGGACAAGCCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTCAAGCTGTGTGACAGCTGCTAGCAGCTGGACAAGCCATCTTT  600

seq1  CTCAAGAGGAGAAGGGAGGCATGGAAAAGGTCCATGCAACCAACCAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGGAGAAGGGAGGCATGGAAAAGGTCCATGCAACCAACCAAAGG  650

seq1  CGCACCGGGACCCTCTCTTCCGTAACAAGCACAATTGTTCCCTTATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCGGGACCCTCTCTTCCGTAACAAGCACAATTGTTCCCTTATTCCA  700

seq1  TCGTAGACAGGAGGAAACAATCCAGAGCCCTCATAAATTTGGACCTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGACAGGAGGAAACAATCCAGAGCCCTCATAAATTTGGACCTCATT  750

seq1  AATTCAGAACCTGTGAGGCATCCTGCAGAATTTGGGCTGCTTTATTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAACCTGTGAGGCATCCTGCAGAATTTGGGCTGCTTTATTTTTG  800

seq1  TGCTCCTTATAAATAAAAATTTTGATAAACAAATCAATACTAAGGAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTCCTTATAAATAAAAATTTTGATAAACAAATCAATACTAA-GAAGAT  849

seq1  GGAACATAAAACAGAGCCTG-TGCTGTTTACAAATCACTCTCACCTGTCA  899
      ||||||| |||||||||||| |||||||||||||||||||||| ||||||
seq2  GGAACATTAAACAGAGCCTGTTGCTGTTTACAAATCACTCTCA-CTGTCA  898

seq1  GAAGAACAAGGTCCCTCAGGACTAAGCATTACTCTGGTGCTCTGGGGCTC  949
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GAAGAACAAGGTCCCTCAAGACTAAGCATTACTCTGGTGCTCTGGGGCTT  948

seq1  TGCCTGTCTGAGAGAGAACAGCCGCTTCTGGATCTGCAGGCCAGGCAGAG  999
      |||||||||||||||| |||||||||||| |||||||| |||| ||||||
seq2  TGCCTGTCTGAGAGAG-ACAGCCGCTTCT-GATCTGCA-GCCA-GCAGAG  994

seq1  AGATGGAGACTCCCTGCAAGCATGGGTTTTGACATAACAACAGATGACCT  1049
      |||| |||||||||||| ||| |||| |||||| ||||||||||||||| 
seq2  AGAT-GAGACTCCCTGC-AGCTTGGG-TTTGAC-TAACAACAGATGACC-  1039

seq1  TTTATAG  1056
      |||||||
seq2  TTTATAG  1046