BAC Information

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BAC

Clone NameB6Ng01-031I07
Chromosome11 (Build37)
Map Location 88,552,429 - 88,665,006
singlet/doubletdoublet
Overlap geneLOC100038945
Upstream geneSupt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031I07.bB6Ng01-031I07.g
ACCDH861107DH861108
length1,058879
definitionDH861107|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I07, 5' end.DH861108|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,663,941 - 88,665,006)(88,552,429 - 88,553,308)
sequence
gaattcatttgaagaagccacttcgattaatctcgcatctggataaaaaa
cgaaatttgggacctcaattacctgattgagtcccacgcagccctcgcca
gcagtaatattaatgagggcagcaatcacttctcccactccgagacccga
ttgcaattccatccccagcaatctgtccttcaagtgcaccggaagtggct
ctattttctcctctgttggagaggctcagttctgaatccttaaccctctg
tgcaccgctggctgtagagagctcgcgatgccgcagttccgtgagtctgt
tacagtcaggagcaggtggggataatcacagccaacactcacttggaaaa
taggcttcaccatgcccgctaatcaactgagaaaactgaggttgttaaag
acggagtctaagccatccagtggtggtggcgccgctgccgccgccgccgc
ctttaatcctggcacttgggagacagaggaaggcagatctcaagtgaatt
taaggccagcctggtcttcaaagtgagttttaggacagccaggccaagga
tgagaagtttaaggccagcctgtggtcagtgagggacagagatgagtcag
ggatacttgactttgtcgcccacctatgtttgttttcaaagatttgcacg
ttccagggatggaaacttgtccttggttcatggtaatggagggtgatgaa
ggtaaagccggactttgaggctttgtggggggagaaagctttctgcagag
gagaagagaggctgggcagccattccactagcaacccaagcagcaatctg
tgtccctggcctctattcctctgaagctctcctgtggtgacccttgtcaa
ttataccactggtgaatatgggtggtgtgcttccgatcccgcaccacctg
gtgtgcatctggtcagctgcctggtcacgggccatgcagtcagagcgcga
ggagccctcgagaggtgaatcagcagatgaagtcccaggagcaatcctca
tcacaatggtcaagtgggtggaggccaagccgcgcaccaggacagatgaa
gagcttct
gaattcaaagcagctacacgcaaaagcttcccagacataactgggagttc
cccgggctcctgtccactgataatgcacacaagccttcccctggtctctc
cttcccacccgattactcatttccccggactccctgaaaagacacccctc
ttccctccctccctccctctctgcctcccccacccttttttctctccctt
gcccaccctcctctctgtaccaggagaagcagaaatgatgatttaatgtg
aaaatacagttgtgcaaacccatcctaaactgctatattctgcccaactg
cattgcatgattgctggcttggtctggattttgccatattgctctctccg
ccctactcagctgagagacagggcaaaggagaaacactttcttatcggga
acatcggtaaccctgagtgctccctgcaaaagacaatcttgggactctgc
tagttcacctgggaaatgaaatggggagagggcgcagctccagcccctca
aactccctcttcccaaactcaaccttactgcttcatgtttatctcaaaca
ggaaggcactttctccaaaagctggagagaaatacttaggagaaaggaaa
gattaaataagccctaaaggacaccagacttactagttttaacagcaata
cattgttaccaacttgccctcccagggtaataaaggagagctttgcatag
cagatgactgaaggcaaatattaaacgtctgatcaactttaacttctctc
tataccaacagcagctggacctgaccaagttcaggttgacagccagtccc
ctgagagccagcacacccagtgggaaagatgacatcactgagccccaagt
tcttatctccatggtgatgggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88663941_88665006
seq2: B6Ng01-031I07.b_44_1101 (reverse)

seq1  AGAAGGCTCTCCATCTTGTCCTGGTGCGCGGCCTTGGCCTCCA-CCACCT  49
      |||| ||||| |||| ||||||||||||||| ||||||||||| |||| |
seq2  AGAA-GCTCTTCATC-TGTCCTGGTGCGCGG-CTTGGCCTCCACCCACTT  47

seq1  GACCATTGTTGATGAGGATTTGCTCCTGGGACTTCATCCTGCTGATTCAC  99
      |||||||| ||||||||| |||||||||||||||||| ||||||||||||
seq2  GACCATTG-TGATGAGGA-TTGCTCCTGGGACTTCAT-CTGCTGATTCAC  94

seq1  CTCCTCCGAGGGCTCCTCGCGCTCTGACTGCATGGCCGGTGACCAGGCAG  149
      |||   ||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTC--TCGAGGGCTCCTCGCGCTCTGACTGCATGGCCCGTGACCAGGCAG  142

seq1  CTGACCAGATGCACACCAGGTGGTGCGGGATCGGAAGCACACCACCCATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGATGCACACCAGGTGGTGCGGGATCGGAAGCACACCACCCATA  192

seq1  TTTCACCAGTGGTATAATTGACAAGGGTCACCACAGGAGAGCTTCAGAGG  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTCACCAGTGGTATAATTGACAAGGGTCACCACAGGAGAGCTTCAGAGG  241

seq1  AATAGAGGCCAGGGACACAGATTGCTGCTTGGGTTGCTAGTGGAATGGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGCCAGGGACACAGATTGCTGCTTGGGTTGCTAGTGGAATGGCT  291

seq1  GCCCAGCCTCTCTTCTCCTCTGCAGAAAGCTTTCTCCCCCCACAAAGCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCTCTCTTCTCCTCTGCAGAAAGCTTTCTCCCCCCACAAAGCCT  341

seq1  CAAAGTCCGGCTTTACCTTCATCACCCTCCATTACCATGAACCAAGGACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCGGCTTTACCTTCATCACCCTCCATTACCATGAACCAAGGACA  391

seq1  AGTTTCCATCCCTGGAACGTGCAAATCTTTGAAAACAAACATAGGTGGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATCCCTGGAACGTGCAAATCTTTGAAAACAAACATAGGTGGGC  441

seq1  GACAAAGTCAAGTATCCCTGACTCATCTCTGTCCCTCACTGACCACAGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTCAAGTATCCCTGACTCATCTCTGTCCCTCACTGACCACAGGC  491

seq1  TGGCCTTAAACTTCTCATCCTTGGCCTGGCTGTCCTAAAACTCACTTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAAACTTCTCATCCTTGGCCTGGCTGTCCTAAAACTCACTTTGA  541

seq1  AGACCAGGCTGGCCTTAAATTCACTTGAGATCTGCCTTCCTCTGTCTCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTAAATTCACTTGAGATCTGCCTTCCTCTGTCTCCC  591

seq1  AAGTGCCAGGATTAAAGGCGGCGGCGGCGGCAGCGGCGCCACCACCACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAGGATTAAAGGCGGCGGCGGCGGCAGCGGCGCCACCACCACTG  641

seq1  GATGGCTTAGACTCCGTCTTTAACAACCTCAGTTTTCTCAGTTGATTAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTAGACTCCGTCTTTAACAACCTCAGTTTTCTCAGTTGATTAGC  691

seq1  GGGCATGGTGAAGCCTATTTTCCAAGTGAGTGTTGGCTGTGATTATCCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGTGAAGCCTATTTTCCAAGTGAGTGTTGGCTGTGATTATCCCC  741

seq1  ACCTGCTCCTGACTGTAACAGACTCACGGAACTGCGGCATCGCGAGCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCCTGACTGTAACAGACTCACGGAACTGCGGCATCGCGAGCTCT  791

seq1  CTACAGCCAGCGGTGCACAGAGGGTTAAGGATTCAGAACTGAGCCTCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCAGCGGTGCACAGAGGGTTAAGGATTCAGAACTGAGCCTCTCC  841

seq1  AACAGAGGAGAAAATAGAGCCACTTCCGGTGCACTTGAAGGACAGATTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAGAAAATAGAGCCACTTCCGGTGCACTTGAAGGACAGATTGC  891

seq1  TGGGGATGGAATTGCAATCGGGTCTCGGAGTGGGAGAAGTGATTGCTGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGGAATTGCAATCGGGTCTCGGAGTGGGAGAAGTGATTGCTGCC  941

seq1  CTCATTAATATTACTGCTGGCGAGGGCTGCGTGGGACTCAATCAGGTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAATATTACTGCTGGCGAGGGCTGCGTGGGACTCAATCAGGTAAT  991

seq1  TGAGGTCCCAAATTTCGTTTTTTATCCAGATGCGAGATTAATCGAAGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCAAATTTCGTTTTTTATCCAGATGCGAGATTAATCGAAGTGG  1041

seq1  CTTCTTCAAATGAATTC  1066
      |||||||||||||||||
seq2  CTTCTTCAAATGAATTC  1058

seq1: chr11_88552429_88553308
seq2: B6Ng01-031I07.g_69_947

seq1  GAATTCAAAGCAGCTACACGCAAAAGCTTCCCAGACATAACTGGGAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAGCTACACGCAAAAGCTTCCCAGACATAACTGGGAGTTC  50

seq1  CCCGGGCTCCTGTCCACTGATAATGCACACAAGCCTTCCCCTGGTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCTCCTGTCCACTGATAATGCACACAAGCCTTCCCCTGGTCTCTC  100

seq1  CTTCCCACCCGATTACTCATTTCCCCGGACTCCCTGAAAAGACACCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACCCGATTACTCATTTCCCCGGACTCCCTGAAAAGACACCCCTC  150

seq1  TTCCCTCCCTCCCTCCCTCTCTGCCTCCCCCACCCTTTTTTCTCTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCTCCCTCCCTCTCTGCCTCCCCCACCCTTTTTTCTCTCCCTT  200

seq1  GCCCACCCTCCTCTCTGTACCAGGAGAAGCAGAAATGATGATTTAATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCTCCTCTCTGTACCAGGAGAAGCAGAAATGATGATTTAATGTG  250

seq1  AAAATACAGTTGTGCAAACCCATCCTAAACTGCTATATTCTGCCCAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAGTTGTGCAAACCCATCCTAAACTGCTATATTCTGCCCAACTG  300

seq1  CATTGCATGATTGCTGGCTTGGTCTGGATTTTGCCATATTGCTCTCTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATGATTGCTGGCTTGGTCTGGATTTTGCCATATTGCTCTCTCCG  350

seq1  CCCTACTCAGCTGAGAGACAGGGCAAAGGAGAAACACTTTCTTATCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCAGCTGAGAGACAGGGCAAAGGAGAAACACTTTCTTATCGGGA  400

seq1  ACATCGGTAACCCTGAGTGCTCCCTGCAAAAGACAATCTTGGGACTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGGTAACCCTGAGTGCTCCCTGCAAAAGACAATCTTGGGACTCTGC  450

seq1  TAGTTCACCTGGGAAATGAAATGGGGAGAGGGCGCAGCTCCAGCCCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCACCTGGGAAATGAAATGGGGAGAGGGCGCAGCTCCAGCCCCTCA  500

seq1  AACTCCCTCTTCCCAAACTCAACCTTACTGCTTCATGTTTATCTCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTCTTCCCAAACTCAACCTTACTGCTTCATGTTTATCTCAAACA  550

seq1  GGAAGGCACTTTCTCCAAAAGCTGGAGAGAAATACTTAGGAGAAAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCACTTTCTCCAAAAGCTGGAGAGAAATACTTAGGAGAAAGGAAA  600

seq1  GATTAAATAAGCCCTAAAGGACACCAGACTTACTAGTTTTAACAGCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATAAGCCCTAAAGGACACCAGACTTACTAGTTTTAACAGCAATA  650

seq1  CATTGTTACCAACTTGCCCTCCCAGGGTAATAAAGGAGAGCTTTGCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTACCAACTTGCCCTCCCAGGGTAATAAAGGAGAGCTTTGCATAG  700

seq1  CAGATGACTGAAGGCAAATATTAAACGTCTGATCAACTTTAACTTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACTGAAGGCAAATATTAAACGTCTGATCAACTTTAACTTCTCTC  750

seq1  TATACCAACAGCAGGCTGGACCTGACCAAGTTCAGGTTGACAGCCAGTCC  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATACCAACAGCA-GCTGGACCTGACCAAGTTCAGGTTGACAGCCAGTCC  799

seq1  CCTGAGAGCCAGCACACCCAGTGGGAAAGATGACATCACTGAGCCCCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGCCAGCACACCCAGTGGGAAAGATGACATCACTGAGCCCCAAG  849

seq1  TTCTTATCTCCATGGTGATGGGGGGGGGGA  880
      ||||||||||||||||||||||||||||||
seq2  TTCTTATCTCCATGGTGATGGGGGGGGGGA  879