BAC Information

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BAC

Clone NameB6Ng01-033A17
Chromosome11 (Build37)
Map Location 114,691,350 - 114,691,765
singlet/doubletsinglet
Overlap genenone
Upstream geneSdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142
Downstream geneGprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033A17.g
ACCDH862207
length409
definitionDH862207|Mus musculus domesticus DNA, BAC clone: B6Ng01-033A17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ccttgacccaccgctgccccaaacggagctcagagcctccccacacaagt
tgaattgccctgcctgagactgagcagggctgtaacccgatctcctctgt
attttgtgtgacctggttgaagtggctgtctggcactcccctccccccat
cccagtcctctcttcccactccaggaagaggaaggtctacggaggaggcc
gctctcctgttattggtcaatgacggcgggccagggttgcctgcttagga
gccactgctttcaccttacttggtcccttttcctgcttccggggtgtcct
gggttctctgtgggttgtgactcctgccgttttccagagctggcaggttt
tcttaggaatgggatgggctgctcttttccttataatctgagcatccagc
ttacctgct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114691350_114691765
seq2: B6Ng01-033A17.g_67_481 (reverse)

seq1  AGCAGGTAAGCTGGATGCTCAGATTATCCGGTGAAGAGCAGGCCCTCCCC  50
      |||||||||||||||||||||||||||  ||  |||||||| || |||| 
seq2  AGCAGGTAAGCTGGATGCTCAGATTATAAGGAAAAGAGCAGCCCATCCCA  50

seq1  TTCCTCAGAACCCCTGCCAGCTCTGGAAAGCGGCAGGAGTCACAACCCAC  100
      ||||| ||||  ||||||||||||||||| ||||||||||||||||||||
seq2  TTCCTAAGAAAACCTGCCAGCTCTGGAAAACGGCAGGAGTCACAACCCAC  100

seq1  AGAGAACCCAGGACACCCCGGAAGCAAGAAAAGGGACCAAGTAAGGTGAA  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGAACCCAGGACACCCCGGAAGCAGGAAAAGGGACCAAGTAAGGTGAA  150

seq1  CGCTGTGGCTCCTAAGCAGGCAACCCTGGCCCGCCGTCATTGACCAATAA  200
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGCTCCTAAGCAGGCAACCCTGGCCCGCCGTCATTGACCAATAA  200

seq1  CAGGAGAGCGGCCTCCTCCGTAGACCTTCCTCTTCCTGGAGTGGGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGCGGCCTCCTCCGTAGACCTTCCTCTTCCTGGAGTGGGAAGAG  250

seq1  AGGACTGGGATGGGGGGAGGGGAGTGCCAGACAGCCACTTCAACCAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGGATGGGGGGAGGGGAGTGCCAGACAGCCACTTCAACCAGGTC  300

seq1  ACACAAAATACAGAGGAGATCGGGTTACAGCCCTGCTCAGTCTCAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATACAGAGGAGATCGGGTTACAGCCCTGCTCAGTCTCAGGCAG  350

seq1  GGCAATTCAACTTCTGTGGGGAGGCTCTGAGCTCCGTTTGGGGCAGCGGT  400
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCAATTCAACTTGTGTGGGGAGGCTCTGAGCTCCGTTTGGGGCAGCGGT  400

seq1  GGGACGTGGGGAATTC  416
      ||| |   ||||||||
seq2  GGGTC-AAGGGAATTC  415