BAC Information

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BAC

Clone NameB6Ng01-033G15
Chromosome11 (Build37)
Map Location 51,816,630 - 51,942,115
singlet/doubletdoublet
Overlap geneCdkl3, LOC100040437, Ppp2ca
Upstream geneOlfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b
Downstream geneOlfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033G15.bB6Ng01-033G15.g
ACCDH862468DH862469
length957825
definitionDH862468|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G15, 5' end.DH862469|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,816,630 - 51,817,589)(51,941,294 - 51,942,115)
sequence
gaattcaggacctctggagtagtagtcagtaatcctaaccgctgagccat
ctctccagccctaaactgttttttgtttttgtttttaaaaaagcaaacta
gtttcttttttacactactcagcacactcgttgtgcacattcatttgtgt
gtataggtcacaagacaacttggaggagttggttcattttccaccacgta
ggtccaagaaattgaactctacactttgggcttcgtagccttttcctact
gagccatctcgatgacctacttttgctattacagttaaatcaagatctgt
aaaaatggagcccttttaaaagctctgcgggctatttaaaagtacatccc
taggcgtccttgtacttactcagcctgtggcagagtccggtgaattattt
tgttttcctaaaaagttttgcgtttcacacgtcatgagaaaactttaaaa
gtactgctagggctggatatgatggcactcagcacagcactctaagcagg
cagataatcttgggagtttgaggccagcctggaagtatacattgtgagtc
ccaggctacccggagctatatagtagcccttgtctcaaaacaaaaaggga
tcactagtaggtagaaagcagtagtaattgggaaactgaaaatgtgtaca
gaaatggtgttagaaataagtcagaggagtagtgaacgctgagtatgtgg
cttactaccgagctaagccctctatccaaaaacgatctttgtccccggtt
taaggattatgtcgactttgaggtcgaaatcggttgcatggaatagtaac
gaagcactggcaaactgtagtcccataagtgttccctagatccattatct
ccgtcaccttctagaactgggcacagtaagggaccattaaccacccaggt
gacaaaacgctctcttgccgggcgaaagcttcaggggttcattctgctat
aaaatgc
gaattccatgcacaatcacagaatacagtgggaggggctgcagagatggc
tgatcagttaagagtaactgctgctcttgtagaggagctgaatttggctc
atcacccacatagcagctcaacccacttaaaaaaaattatctcatgtatg
actacaatgtagctgtcttcagacatacagaagaggatatcaggtcccat
tatagatggttgtgagccaccatgtggctgtgattcctgggaactgaact
caggacctctggaagaggaaacagtcctcttaaccagagccatctctcca
gcctgactctaggagataaaacacctatttctgagccaggcagtggtggc
gcgcacctttattcccagcacttgggaggcagaggcagggggatttctga
gttcaaggacagccaggaactgagaaaccctgtcttgaaccccctctgcc
ccccccccatttctgacctctgtggccactacactcctgtgcacaaacaa
acccaccgacacactgataatttgaaaaaccacctacagatgtgggtaat
ggaagcacaaggccctactatgatacccttggtcctttatctcccttccc
aacatgcacttctctaagggcacctgtcacaaggaacttcagtactctga
gaacaggggacagccctggttacaccacttgtactgatcaaataaatggc
tacaacagcagggtgaacgttacctagcttttactcttgccagcagccca
aggataagggagggatcgtttagactgggcaagagtttactcaccgtggt
tagactcaccacaaagtgactgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51816630_51817589
seq2: B6Ng01-033G15.b_43_999

seq1  GAATTCAGGACCTCTGGAGTAGTAGTCAGTAATCCTAACCGCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAGTAGTAGTCAGTAATCCTAACCGCTGAGCCAT  50

seq1  CTCTCCAGCCCTAAACTGTTTTTTGTTTTTGTTTTTAAAAAAGCAAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCTAAACTGTTTTTTGTTTTTGTTTTTAAAAAAGCAAACTA  100

seq1  GTTTCTTTTTTACACTACTCAGCACACTCGTTGTGCACATTCATTTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTTTACACTACTCAGCACACTCGTTGTGCACATTCATTTGTGT  150

seq1  GTATAGGTCACAAGACAACTTGGAGGAGTTGGTTCATTTTCCACCACGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGTCACAAGACAACTTGGAGGAGTTGGTTCATTTTCCACCACGTA  200

seq1  GGTCCAAGAAATTGAACTCTACACTTTGGGCTTCGTAGCCTTTTCCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGAAATTGAACTCTACACTTTGGGCTTCGTAGCCTTTTCCTACT  250

seq1  GAGCCATCTCGATGACCTACTTTTGCTATTACAGTTAAATCAAGATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCGATGACCTACTTTTGCTATTACAGTTAAATCAAGATCTGT  300

seq1  AAAAATGGAGCCCTTTTAAAAGCTCTGCGGGCTATTTAAAAGTACATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGAGCCCTTTTAAAAGCTCTGCGGGCTATTTAAAAGTACATCCC  350

seq1  TAGGCGTCCTTGTACTTACTCAGCCTGTGGCAGAGTCCGGTGAATTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGTCCTTGTACTTACTCAGCCTGTGGCAGAGTCCGGTGAATTATTT  400

seq1  TGTTTTCCTAAAAAGTTTTGCGTTTCACACGTCATGAGAAAACTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTAAAAAGTTTTGCGTTTCACACGTCATGAGAAAACTTTAAAA  450

seq1  GTACTGCTAGGGCTGGATATGATGGCACTCAGCACAGCACTCTAAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCTAGGGCTGGATATGATGGCACTCAGCACAGCACTCTAAGCAGG  500

seq1  CAGATAATCTTGGGAGTTTGAGGCCAGCCTGGAAGTATACATTGTGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAATCTTGGGAGTTTGAGGCCAGCCTGGAAGTATACATTGTGAGTC  550

seq1  CCAGGCTACCCGGAGCTATATAGTAGCCCTTGTCTCAAAACAAAAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTACCCGGAGCTATATAGTAGCCCTTGTCTCAAAACAAAAAGGGA  600

seq1  TCACTAGTAGGTAGAAAGCAGTAGTAATTGGGAAACTGAAAATGTGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGTAGGTAGAAAGCAGTAGTAATTGGGAAACTGAAAATGTGTACA  650

seq1  GAAATGGTGTTAGAAATAAGTCAGAGGAGTAGTGAACGCTGAGTATGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTGTTAGAAATAAGTCAGAGGAGTAGTGAACGCTGAGTATGTGG  700

seq1  CTTACTACCGAGCTAAGCCCTCTATCCAAAAACGATC-TTGTCCCCGGTT  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTACTACCGAGCTAAGCCCTCTATCCAAAAACGATCTTTGTCCCCGGTT  750

seq1  TAAGGATTATGTCGACTTTGAGGTCGAAATCGGTTGCATGGAATAGTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATTATGTCGACTTTGAGGTCGAAATCGGTTGCATGGAATAGTAAC  800

seq1  GAAGCACTGGCAAACTGTAGCCCCATAAGTGTTCCGTAGATCCAATTATC  849
      |||||||||||||||||||| |||||||||||||| ||||||| ||||||
seq2  GAAGCACTGGCAAACTGTAGTCCCATAAGTGTTCCCTAGATCC-ATTATC  849

seq1  TCCGTCAACCTCCTAGAACCGGGCACAAGTAAGGGACCAGTAACCACCCA  899
      |||||| |||| ||||||| |||||| |||||||||||| ||||||||||
seq2  TCCGTC-ACCTTCTAGAACTGGGCAC-AGTAAGGGACCATTAACCACCCA  897

seq1  GGTGACAAAACGCTCTCTTGCCGGGCGAAAGCCTCCAGGCGTTCATTCTG  949
      ||||||||||||||||||||||||||||||| || |||| ||||||||||
seq2  GGTGACAAAACGCTCTCTTGCCGGGCGAAAG-CTTCAGGGGTTCATTCTG  946

seq1  CTATAAAATGC  960
      |||||||||||
seq2  CTATAAAATGC  957

seq1: chr11_51941294_51942115
seq2: B6Ng01-033G15.g_68_891 (reverse)

seq1  CACAGTCCCTTCTGTGGTG-GTCTAACACGGGTGAGTTAACTCTTG-CCA  48
      ||||||| ||| ||||||| |||||||   ||||||| |||||||| |||
seq2  CACAGTCACTT-TGTGGTGAGTCTAACCACGGTGAGTAAACTCTTGCCCA  49

seq1  GTCTTAACGATCCCT-CCTTATCCTTTGGGCTGCTGGCAAGAGTAAAAGC  97
      |||| |||||||||| |||||||| |||||||||||||||||||||||||
seq2  GTCTAAACGATCCCTCCCTTATCC-TTGGGCTGCTGGCAAGAGTAAAAGC  98

seq1  TAGGTAACGTTCACCCTGCTGTTGTAGCCATTTATTTGATCAGTACAAGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACGTTCACCCTGCTGTTGTAGCCATTTATTTGATCAGTACAAGT  148

seq1  GGTGTAACCAGGGCTGT-CCCTGTTCTCAGAGTACTGAAGTTCCTTGTGA  196
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTGTAACCAGGGCTGTCCCCTGTTCTCAGAGTACTGAAGTTCCTTGTGA  198

seq1  CAGGTGCCCTTAGAGAAGTGCATGTTGGGAAGGGAGATAAAGGACCAAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCCTTAGAGAAGTGCATGTTGGGAAGGGAGATAAAGGACCAAGG  248

seq1  GTATCATAGTAGGGCCTTGTGCTTCCATTACCCACATCTGTAGGTGGTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATAGTAGGGCCTTGTGCTTCCATTACCCACATCTGTAGGTGGTTT  298

seq1  TTCAAATTATCAGTGTGTCGGTGGGTTTGTTTGTGCACAGGAGTGTAGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTATCAGTGTGTCGGTGGGTTTGTTTGTGCACAGGAGTGTAGTG  348

seq1  GCCACAGAGGTCAGAAATGGGGGGGGGGCAGAGGGGGTTCAAGACAGGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGGTCAGAAATGGGGGGGGGGCAGAGGGGGTTCAAGACAGGGT  398

seq1  TTCTCAGTTCCTGGCTGTCCTTGAACTCAGAAATCCCCCTGCCTCTGCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTTCCTGGCTGTCCTTGAACTCAGAAATCCCCCTGCCTCTGCCT  448

seq1  CCCAAGTGCTGGGAATAAAGGTGCGCGCCACCACTGCCTGGCTCAGAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGAATAAAGGTGCGCGCCACCACTGCCTGGCTCAGAAAT  498

seq1  AGGTGTTTTATCTCCTAGAGTCAGGCTGGAGAGATGGCTCTGGTTAAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTTATCTCCTAGAGTCAGGCTGGAGAGATGGCTCTGGTTAAGAG  548

seq1  GACTGTTTCCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGGAATCACAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTCCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGGAATCACAGC  598

seq1  CACATGGTGGCTCACAACCATCTATAATGGGACCTGATATCCTCTTCTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATCTATAATGGGACCTGATATCCTCTTCTGT  648

seq1  ATGTCTGAAGACAGCTACATTGTAGTCATACATGAGATAATTTTTTTTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGAAGACAGCTACATTGTAGTCATACATGAGATAATTTTTTTTAA  698

seq1  GTGGGTTGAGCTGCTATGTGGGTGATGAGCCAAATTCAGCTCCTCTACAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGAGCTGCTATGTGGGTGATGAGCCAAATTCAGCTCCTCTACAA  748

seq1  GAGCAGCAGTTACTCTTAACTGCTCAGCCATCTCTGCAGCCCCTCCCACT  796
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGCAGCAGTTACTCTTAACTGATCAGCCATCTCTGCAGCCCCTCCCACT  798

seq1  GTATTCTGTGATTGTGCATGGAATTC  822
      ||||||||||||||||||||||||||
seq2  GTATTCTGTGATTGTGCATGGAATTC  824