BAC Information

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BAC

Clone NameB6Ng01-035C07
Chromosome11 (Build37)
Map Location 82,451,064 - 82,601,603
singlet/doubletdoublet
Overlap geneCct6b, Ccdc16, Lig3
Upstream geneAccn1, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
Downstream geneRffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035C07.bB6Ng01-035C07.g
ACCDH863695DH863696
length932381
definitionDH863695|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C07, 5' end.DH863696|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,600,674 - 82,601,603)(82,451,064 - 82,451,450)
sequence
gaattccgatatacagccgggcatggtggcgcacgcctttaatcccagca
ctcgggaggcagaggcaggtggatctctgagttcgaggccagcctggtct
acagagtgagttccaggacagccaaggctatacagagaaactccgtctca
aaaaaacaaaaaaacaaaaaaaaaaccaaaaagaattccgatatacaagt
gtctgcacatcaagctggccatggctctgagcttttcagaggaaaagcat
attcagtatatgtacagtcctacctcctgtggagcctttctgcaagaagt
catggatgatctgggtcttggtgttatagctaggattttcagccaccatg
gcgcacagcttccggaactctcgtagcagacaatctttgtgcttagggtc
acatttacttgcagacagactcgttccaggagcagggcttgagggggctt
gctcagagttgttgggttttgctgctggtgagagaaacaacacagatgat
tcatttttcttttctggggaagcacaaaaaggaggaagacactaaagttt
tgctgggggcttatgccattttatgcaagcccccaaagagtccctagaga
gagatgtcccggatccgtgtatcaggtatagacatggaggccaaggaatc
agtacaaataccactgcataaagtctacactgagaagcacccgtgtatgt
gagtacctcacacaggaacaaaggctgctttcatgccacaagccatcaag
cggatctcagaacaattgtcattctgactcccacattgctgggatgaaga
gagaagaaaccaaaagacctgtaaagctgaaatgacagttcaccgtggac
tgtcacgctacagcaaactgacagttatagagttactgtcttcttactga
tgagtcaagcccgagagcagacagttcagaca
ctatcatgggtttttaatgaggacctctgggggtagcagtgagtaaagac
gcaggtctctatcatggacagcagaggggccagccgcagtcacagagagt
gcactttctagagcacactggctcagagtgaggagcagtctcctccagct
gctcccccccgccccaacccctcagcttcacagctcttcagccaagccag
atgagctgggaacgcaatcctcaaggtgtgaccaagaatctacggggact
tagattcctcggattccccagagaggcttttcacatggtggtttacccag
aaggcaatgtgtctgtgacagaagactcaccacatggatttcaggcctgg
gaagaaatatctgggggtaggggtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_82600674_82601603
seq2: B6Ng01-035C07.b_45_970 (reverse)

seq1  AACTGTCTGCTCTCGGGCCTTGGACTCATCAGTAAGAGGACAGTAAACTC  50
      ||||||||||||||||||  | ||||||||||||||| |||||| |||||
seq2  AACTGTCTGCTCTCGGGC--TTGACTCATCAGTAAGAAGACAGT-AACTC  47

seq1  TATAACCTGTCAGGTTTGCTGTAGCGTTGACAGTCCACGGTG-ACTGTCA  99
      ||||| |||||| ||||||||||||| ||||||||||||||| |||||||
seq2  TATAA-CTGTCA-GTTTGCTGTAGCG-TGACAGTCCACGGTGAACTGTCA  94

seq1  TTTCAGCTTTACAGGTCCTTTGGTTTCTTCTCTCTTCATCCCAGCAATGT  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTTACAGGTCTTTTGGTTTCTTCTCTCTTCATCCCAGCAATGT  144

seq1  -GGAGTCAGAATGACAATTGTTCTGAGATCCGCTTGATGGCTTGTGGCAT  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCAGAATGACAATTGTTCTGAGATCCGCTTGATGGCTTGTGGCAT  194

seq1  GAAAGCAGCCTTTGTTCCTGTGTGAGGTACTCACATACACGGGTGCTTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCCTTTGTTCCTGTGTGAGGTACTCACATACACGGGTGCTTCT  244

seq1  CAGTGTAGACTTTATGCAGTGGTATTTGTACTGATTCCTTGGCCTCCATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGACTTTATGCAGTGGTATTTGTACTGATTCCTTGGCCTCCATG  294

seq1  TCTATACCTGATACACGGATCCGGGACATCTCTCTCTAGGGACTCTTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCTGATACACGGATCCGGGACATCTCTCTCTAGGGACTCTTTGG  344

seq1  GGGCTTGCATAAAATGGCATAAGCCCCCAGCAAAACTTTAGTGTCTTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGCATAAAATGGCATAAGCCCCCAGCAAAACTTTAGTGTCTTCCT  394

seq1  CCTTTTTGTGCTTCCCCAGAAAAGAAAAATGAATCATCTGTGTTGTTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGTGCTTCCCCAGAAAAGAAAAATGAATCATCTGTGTTGTTTCT  444

seq1  CTCACCAGCAGCAAAACCCAACAACTCTGAGCAAGCCCCCTCAAGCCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGCAGCAAAACCCAACAACTCTGAGCAAGCCCCCTCAAGCCCTG  494

seq1  CTCCTGGAACGAGTCTGTCTGCAAGTAAATGTGACCCTAAGCACAAAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAACGAGTCTGTCTGCAAGTAAATGTGACCCTAAGCACAAAGAT  544

seq1  TGTCTGCTACGAGAGTTCCGGAAGCTGTGCGCCATGGTGGCTGAAAATCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTACGAGAGTTCCGGAAGCTGTGCGCCATGGTGGCTGAAAATCC  594

seq1  TAGCTATAACACCAAGACCCAGATCATCCATGACTTCTTGCAGAAAGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATAACACCAAGACCCAGATCATCCATGACTTCTTGCAGAAAGGCT  644

seq1  CCACAGGAGGTAGGACTGTACATATACTGAATATGCTTTTCCTCTGAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAGGTAGGACTGTACATATACTGAATATGCTTTTCCTCTGAAAA  694

seq1  GCTCAGAGCCATGGCCAGCTTGATGTGCAGACACTTGTATATCGGAATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCCATGGCCAGCTTGATGTGCAGACACTTGTATATCGGAATTC  744

seq1  TTTTTGGTTTTTTTTTTGTTTTTTTGTTTTTTTGAGACGGAGTTTCTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTTTTTTTGTTTTTTTGTTTTTTTGAGACGGAGTTTCTCTG  794

seq1  TATAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAA  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  844

seq1  ACTCAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGT  894

seq1  GCGCCACCATGCCCGGCTGTATATCGGAATTC  930
      ||||||||||||||||||||||||||||||||
seq2  GCGCCACCATGCCCGGCTGTATATCGGAATTC  926

seq1: chr11_82451064_82451450
seq2: B6Ng01-035C07.g_67_453

seq1  GAATTCCTATCATGGGTTTTTAATGAGGACCTCTGGGGGTAGCAGTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCATGGGTTTTTAATGAGGACCTCTGGGGGTAGCAGTGAGT  50

seq1  AAAGACGCAGGTCTCTATCATGGACAGCAGAGGGGCCAGCCGCAGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGCAGGTCTCTATCATGGACAGCAGAGGGGCCAGCCGCAGTCACA  100

seq1  GAGAGTGCACTTTCTAGAGCACACTGGCTCAGAGTGAGGAGCAGTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGCACTTTCTAGAGCACACTGGCTCAGAGTGAGGAGCAGTCTCCT  150

seq1  CCAGCTGCTCCCCCCCGCCCCAACCCCTCAGCTTCACAGCTCTTCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCTCCCCCCCGCCCCAACCCCTCAGCTTCACAGCTCTTCAGCCA  200

seq1  AGCCAGATGAGCTGGGAACGCAATCCTCAAGGTGTGACCAAGAATCTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATGAGCTGGGAACGCAATCCTCAAGGTGTGACCAAGAATCTACG  250

seq1  GGGACTTAGATTCCTCGGATTCCCCAGAGAGGCTTTTCACATGGTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTAGATTCCTCGGATTCCCCAGAGAGGCTTTTCACATGGTGGTTT  300

seq1  ACCCAGAAGGCAATGTGTCTGTGACAGAAGACTCACCACATGGATTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGGCAATGTGTCTGTGACAGAAGACTCACCACATGGATTTCAG  350

seq1  GCCTGGGAAGAAATATCTGGGGGTAGGGGTGGGGGTG  387
      |||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAAGAAATATCTGGGGGTAGGGGTGGGGGTG  387