BAC Information

Click to search

BAC

Clone NameB6Ng01-035H15
Chromosome11 (Build37)
Map Location 40,235,339 - 40,336,679
singlet/doubletdoublet
Overlap geneLOC100039241
Upstream genenone
Downstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285, Hspd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H15.bB6Ng01-035H15.g
ACCDH863929DH863930
length960976
definitionDH863929|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H15, 5' end.DH863930|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,335,699 - 40,336,679)(40,235,339 - 40,236,338)
sequence
gaattctttggctgaggtgcaatgaatgtattgtgagagcgactctatcg
ctctatcgagcacagtgtgatggtggcttaatctggctgcaactgtgtct
cacatatcactgtacccagtcaatactctattattgcaagttaagtggtt
tggtacagtattccatgcacagggtattagaagctgtgttccttaatttc
ctaagcaataatggtataagcagtatgcattttttattacaaaaactaac
aattgcctccacagagttaatagttttttatataccatcagtactcagga
aatttagtcataaatcagagcaaaattagatgtaaaatgtactaaatttt
ggcaggattagactttctttgtaaaggctgaaatcttcaggttttcttgg
aatcagacattgattctcttcctggggattttatttttattttatttaaa
tgggtgtgttgtttccggattaaaattgactaggaaaaattatgacaaca
gtaattctcattacagggctgggtagcattccttataggtcttggggact
ggcttgatgcagcctgttctcagcatgtttgaagtgctcattgcctccga
gaaaaaggtgttttgagctaacagagaaggcagtgaggaagagtacttct
tcttccacaagtttgtggtttttacacgccaggggctctgtattgaaaga
cagtatgcattctgcaggttacttatcttttcatttcaatgatgaaactt
cttctaggaggcttggtcaaggatttccacatatcacaagccttaactca
agctcatagtggatcaagctgtcactgggtgacaggaccaggaagcttaa
tgtcagaaagaggggaaaggagtagagaaagagcagggagagagattctc
tgtctctcatctgacagtatgcatttgagtctacatgtactctcattagt
gattccctat
gaattcatagctctcttcttctgagtgtgggctgaatgtaagcaggagct
tcatgcccctgcagctttgacacactgccataatggtccttagctgaaag
ataaaaataaacccctcctcccttaagttgcttttgtgaagtgtttttgc
cctaatagcatgacaaggaaataagaaagactgtaacaaaaggatatttg
ttgggagctaattagagactatcgtttctcagtggatcattcctctagtc
cacatttcacagaattcagtgctattgctttaggaaattattcacatagc
cacagatgaagacaagggagataaagacaaccaatgatagactttcagct
tcagaagaatgataataatcatttgagatttggagcaaaaacatgaagag
agaaaaaatagtcccctaaaatgttccaaaatagtgcaccttaatacaat
caacgtctaatgctcacagttaccagacatggtagaaaccacagtgtaac
tggaagggcttacttactaccaaccatttccagctctactcacgttcctt
tgctcatgcaaatgatttagtaaaatcaaatagcttttaagctcaagaac
tcaaggaaaagcaaggcgtgagagcaactatttggtgtcttggataaaaa
aggaagaaaaacagaaccaaaaacaaacaacaaacaaaaacagtggaatc
catctccagaatccttttaccttttcttgctttgtcattggatgtgagtg
aaagtccacccaaagccatgtcttaaaacaaacaaataaacaaaattcaa
tttatttaaacagacatccaatttatttttcttgtataaaaacctttatt
tagtagcaaaagctggaactgctctttgacagagactctgataagacttt
cacagatgtcagtaaatttctgggacacagattttcctcagagtcagtca
gtcgctgcagactagaatgacatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40335699_40336679
seq2: B6Ng01-035H15.b_42_1001 (reverse)

seq1  ATAGGGAAATTCACTTAAATGAGAGTACATTGGTAGAACCTCAAAATGGC  50
      ||||||||  |||||  |||||||||||||  |||||  ||||||   ||
seq2  ATAGGGAA--TCACT--AATGAGAGTACAT--GTAGA--CTCAAA--TGC  40

seq1  ATTAACTGTCCAGATGAGAAGACCAGAGAATCTCTCTTCCCCTGCTCTTT  100
      ||  ||||| |||||||| ||| ||||||||||||||  |||||||||||
seq2  AT--ACTGT-CAGATGAG-AGA-CAGAGAATCTCTCT--CCCTGCTCTTT  83

seq1  CTCCTACTCCTTTTCCCCCTCTTTCTGACATTAAGCTTCCTGGTCCTGTC  150
      || ||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CT-CTACTCCTTT--CCCCTCTTTCTGACATTAAGCTTCCTGGTCCTGTC  130

seq1  ACCCAGTGACAGCCTTGATCCACTATGAGCTTGAGTTAAGGCTTGTGATA  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGACAG-CTTGATCCACTATGAGCTTGAGTTAAGGCTTGTGATA  179

seq1  TGTGGAAATCCTTGACCAAGCCTCCTAGAAGAAGTTTCATCATTGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAATCCTTGACCAAGCCTCCTAGAAGAAGTTTCATCATTGAAATG  229

seq1  AAAAGATAAGTAACCTGCAGAATGCATACTGTCTTTCAATACAGAGCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAAGTAACCTGCAGAATGCATACTGTCTTTCAATACAGAGCCCC  279

seq1  TGGCGTGTAAAAACCACAAACTTGTGGAAGAAGAAGTACTCTTCCTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGTAAAAACCACAAACTTGTGGAAGAAGAAGTACTCTTCCTCACT  329

seq1  GCCTTCTCTGTTAGCTCAAAACACCTTTTTCTCGGAGGCAATGAGCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCTGTTAGCTCAAAACACCTTTTTCTCGGAGGCAATGAGCACTT  379

seq1  CAAACATGCTGAGAACAGGCTGCATCAAGCCAGTCCCCAAGACCTATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGCTGAGAACAGGCTGCATCAAGCCAGTCCCCAAGACCTATAAG  429

seq1  GAATGCTACCCAGCCCTGTAATGAGAATTACTGTTGTCATAATTTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTACCCAGCCCTGTAATGAGAATTACTGTTGTCATAATTTTTCCT  479

seq1  AGTCAATTTTAATCCGGAAACAACACACCCATTTAAATAAAATAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATTTTAATCCGGAAACAACACACCCATTTAAATAAAATAAAAATA  529

seq1  AAATCCCCAGGAAGAGAATCAATGTCTGATTCCAAGAAAACCTGAAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCAGGAAGAGAATCAATGTCTGATTCCAAGAAAACCTGAAGATT  579

seq1  TCAGCCTTTACAAAGAAAGTCTAATCCTGCCAAAATTTAGTACATTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTTACAAAGAAAGTCTAATCCTGCCAAAATTTAGTACATTTTAC  629

seq1  ATCTAATTTTGCTCTGATTTATGACTAAATTTCCTGAGTACTGATGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTTTGCTCTGATTTATGACTAAATTTCCTGAGTACTGATGGTAT  679

seq1  ATAAAAAACTATTAACTCTGTGGAGGCAATTGTTAGTTTTTGTAATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAACTATTAACTCTGTGGAGGCAATTGTTAGTTTTTGTAATAAAA  729

seq1  AATGCATACTGCTTATACCATTATTGCTTAGGAAATTAAGGAACACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATACTGCTTATACCATTATTGCTTAGGAAATTAAGGAACACAGCT  779

seq1  TCTAATACCCTGTGCATGGAATACTGTACCAAACCACTTAACTTGCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACCCTGTGCATGGAATACTGTACCAAACCACTTAACTTGCAATA  829

seq1  ATAGAGTATTGACTGGGTACAGTGATATGTGAGACACAGTTGCAGCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTATTGACTGGGTACAGTGATATGTGAGACACAGTTGCAGCCAGA  879

seq1  TTAAGCCACCATCACACTGTGCTCGATAGAGCGATAGAGTCGCTCTCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCACCATCACACTGTGCTCGATAGAGCGATAGAGTCGCTCTCACA  929

seq1  ATACATTCATTGCACCTCAGCCAAAGAATTC  981
      |||||||||||||||||||||||||||||||
seq2  ATACATTCATTGCACCTCAGCCAAAGAATTC  960

seq1: chr11_40235339_40236338
seq2: B6Ng01-035H15.g_68_1043

seq1  GAATTCATAGCTCTCTTCTTCTGAGTGTGGGCTGAATGTAAGCAGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCTCTCTTCTTCTGAGTGTGGGCTGAATGTAAGCAGGAGCT  50

seq1  TCATGCCCCTGCAGCTTTGACACACTGCCATAATGGTCCTTAGCTGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCCCTGCAGCTTTGACACACTGCCATAATGGTCCTTAGCTGAAAG  100

seq1  ATAAAAATAAACCCCTCCTCCCTTAAGTTGCTTTTGTGAAGTGTTTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAAACCCCTCCTCCCTTAAGTTGCTTTTGTGAAGTGTTTTTGC  150

seq1  CCTAATAGCATGACAAGGAAATAAGAAAGACTGTAACAAAAGGATATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGCATGACAAGGAAATAAGAAAGACTGTAACAAAAGGATATTTG  200

seq1  TTGGGAGCTAATTAGAGACTATCGTTTCTCAGTGGATCATTCCTCTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCTAATTAGAGACTATCGTTTCTCAGTGGATCATTCCTCTAGTC  250

seq1  CACATTTCACAGAATTCAGTGCTATTGCTTTAGGAAATTATTCACATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCACAGAATTCAGTGCTATTGCTTTAGGAAATTATTCACATAGC  300

seq1  CACAGATGAAGACAAGGGAGATAAAGACAACCAATGATAGACTTTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGAAGACAAGGGAGATAAAGACAACCAATGATAGACTTTCAGCT  350

seq1  TCAGAAGAATGATAATAATCATTTGAGATTTGGAGCAAAAACATGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAATGATAATAATCATTTGAGATTTGGAGCAAAAACATGAAGAG  400

seq1  AGAAAAAATAGTCCCCTAAAATGTTCCAAAATAGTGCACCTTAATACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATAGTCCCCTAAAATGTTCCAAAATAGTGCACCTTAATACAAT  450

seq1  CAACGTCTAATGCTCACAGTTACCAGACATGGTAGAAACCACAGTGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTCTAATGCTCACAGTTACCAGACATGGTAGAAACCACAGTGTAAC  500

seq1  TGGAAGGGCTTACTTACTACCAACCATTTCCAGCTCTACTCACGTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGCTTACTTACTACCAACCATTTCCAGCTCTACTCACGTTCCTT  550

seq1  TGCTCATGCAAATGATTTAGTAAAATCAAATAGCTTTTAAGCTCAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGCAAATGATTTAGTAAAATCAAATAGCTTTTAAGCTCAAGAAC  600

seq1  TCAAGGAAAAGCAAGGCGTGAGAGCAACTATTTGGTGTCTTGGAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAAGGAAAAGCAAGGCGTGAGAGCAACTATTTGGTGTCTTGG-ATAAAA  649

seq1  AAGGAAGAAAAACAGAACCAAAAACAAACAACAAAACAAAAACAGTGGAA  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGGAAGAAAAACAGAACCAAAAACAAACAAC-AAACAAAAACAGTGGAA  698

seq1  TCCATCTCCAGAATCCTTTTACCTTTTCTTGCTTTGTCATTGGATGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCAGAATCCTTTTACCTTTTCTTGCTTTGTCATTGGATGTGAG  748

seq1  TGAAAGTCCACCCAAAGCCATGTCTTAAAACAAACAAATAAACAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAAAGTCCACCCAAAGCCATGTCTTAAAACAAACAAATAAAC-AAAATT  797

seq1  CAATTTATTTAAACAGACAATCCAATTTATTTTTCTTGTATTAAAAACCT  850
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  CAATTTATTTAAACAGAC-ATCCAATTTATTTTTCTTGTA-TAAAAACCT  845

seq1  TTATTTAGTAGCAAAAGCTGGAACCTGGCTCCTTTGAACAGAGACTCTGA  900
      ||||||||||||||||||||||||   ||| ||||| |||||||||||||
seq2  TTATTTAGTAGCAAAAGCTGGAAC--TGCT-CTTTG-ACAGAGACTCTGA  891

seq1  TACAGACTTTCACAAGATGGTCAGTAAATTTCTGGGGAACACAGATTTTT  950
      || |||||||||| |||| |||||||||||||||||  ||||||||||| 
seq2  TA-AGACTTTCAC-AGAT-GTCAGTAAATTTCTGGG--ACACAGATTTT-  935

seq1  CCCCCAGAGGTCAAGGGTCAGGTCGCTGCAGGACTTAGAAATGACATCAA  1000
       || |||| ||||   |||| ||||||||| ||| ||| |||||||||||
seq2  -CCTCAGA-GTCA---GTCA-GTCGCTGCA-GAC-TAG-AATGACATCAA  976