BAC Information

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BAC

Clone NameB6Ng01-035O06
Chromosome11 (Build37)
Map Location 3,757,778 - 3,949,138
singlet/doubletdoublet
Overlap geneOsbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneSec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035O06.bB6Ng01-035O06.g
ACCDH864238DH864239
length1,065226
definitionDH864238|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O06, 5' end.DH864239|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,757,778 - 3,758,877)(3,948,913 - 3,949,138)
sequence
gaattcttccctaatttcattttattaaatgttctctgtgagtcaagagg
taagaacgaaatgcttacaacaggaacgaacaacgacaacaacaaactgg
cgtgcgaagctgtgttcctgggcagtatcagaggagacgcgtacttaggg
atgctaggcatcctcagcctccatcttgtatcttaccacatcgttggaaa
gaagtaaaactgtgcacagtgacccatgcctcccagaaacaccactgaca
cgtgacagtattcacaaatagcatcctttgactcctgctaacaggaatgt
cgctggacccatctgttgactgtgaggtacaaaacaggctgatgggatgg
ccaggctgcctcacaggcccatgggaaaagccagtgcttgctgttggaac
cagaccctgacattcaaaccaagactggagagtgcagaacccctatttct
attttcatgctgtcattgctggtccccaagattccctctttggggcagag
acttttgaggttgagctcttccttccagaatacccaagggagacacctca
actctattctgtgaccacagttcgcaggggggcatccccagccatgacca
ggtccacagaggagataattcagcaaggtaagaatgagtcacgtatggga
gtctgaatggtggaagtcttgtagcttgactgactggcagtcagaatgct
tctttatttaacagaactcagtaggcagggatagattcatgttgtcccaa
aacagaaatcctatcatttttatccctagacacaatggcctcttggtcat
aagtttagtttaccattgataaacagtgacagagcagttatcttttataa
tcattttccatcatcaactccatagcccactttagatctagcagcatact
ttgcaaagcatgatagcacatctcagctgtagcagaaatctcaagcagcc
tggctgtgctattgtcatagcccagaaaaaatcttcagccaagctgctgc
agtattattcattttggcatgaaatgtatactttgtagattattgtggtc
aatcttggaattttt
tccttcgcctcggacgtgtcactccctgattggctgcagcccatcggccg
agttgacgtcacggggaaggcagagcacaagtagtcataagatacccttg
gcacatgcgcagattatttgtttaccacttagaacacagctgtcagcgcc
atcttgtaacggcgaatgtgggcgcggctcccaacaggagagagggaaag
gaaaaacaggagaaggagaaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3757778_3758877
seq2: B6Ng01-035O06.b_47_1111

seq1  GAATTCTTCCCTAATTTCATTTTATTAAATGTTCTCTGTGAGTCAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTAATTTCATTTTATTAAATGTTCTCTGTGAGTCAAGAGG  50

seq1  TAAGAACGAAATGCTTACAACAGGAACGAACAACGACAACAACAAACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACGAAATGCTTACAACAGGAACGAACAACGACAACAACAAACTGG  100

seq1  CGTGCGAAGCTGTGTTCCTGGGCAGTATCAGAGGAGACGCGTACTTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGAAGCTGTGTTCCTGGGCAGTATCAGAGGAGACGCGTACTTAGGG  150

seq1  ATGCTAGGCATCCTCAGCCTCCATCTTGTATCTTACCACATCGTTGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGCATCCTCAGCCTCCATCTTGTATCTTACCACATCGTTGGAAA  200

seq1  GAAGTAAAACTGTGCACAGTGACCCATGCCTCCCAGAAACACCACTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAACTGTGCACAGTGACCCATGCCTCCCAGAAACACCACTGACA  250

seq1  CGTGACAGTATTCACAAATAGCATCCTTTGACTCCTGCTAACAGGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACAGTATTCACAAATAGCATCCTTTGACTCCTGCTAACAGGAATGT  300

seq1  CGCTGGACCCATCTGTTGACTGTGAGGTACAAAACAGGCTGATGGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGACCCATCTGTTGACTGTGAGGTACAAAACAGGCTGATGGGATGG  350

seq1  CCAGGCTGCCTCACAGGCCCATGGGAAAAGCCAGTGCTTGCTGTTGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGCCTCACAGGCCCATGGGAAAAGCCAGTGCTTGCTGTTGGAAC  400

seq1  CAGACCCTGACATTCAAACCAAGACTGGAGAGTGCAGAACCCCTATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCTGACATTCAAACCAAGACTGGAGAGTGCAGAACCCCTATTTCT  450

seq1  ATTTTCATGCTGTCATTGCTGGTCCCCAAGATTCCCTCTTTGGGGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATGCTGTCATTGCTGGTCCCCAAGATTCCCTCTTTGGGGCAGAG  500

seq1  ACTTTTGAGGTTGAGCTCTTCCTTCCAGAATACCCAAGGGAGACACCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGAGGTTGAGCTCTTCCTTCCAGAATACCCAAGGGAGACACCTCA  550

seq1  ACTCTATTCTGTGACCACAGTTCGCAGGGGGGCATCCCCAGCCATGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTCTGTGACCACAGTTCGCAGGGGGGCATCCCCAGCCATGACCA  600

seq1  GGTCCACAGAGGAGATAATTCAGCAAGGTAAGAATGAGTCAGGTATGGGA  650
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTCCACAGAGGAGATAATTCAGCAAGGTAAGAATGAGTCACGTATGGGA  650

seq1  GTCTGAATGGTGGAAGTCTTGTAGCTTGACTGACTGGCAGTCAGAATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATGGTGGAAGTCTTGTAGCTTGACTGACTGGCAGTCAGAATGCT  700

seq1  TCTTTATTTAAACAGAACTCAGTAGGCAGGGATAGATTCATGTTGTCCCA  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTT-AACAGAACTCAGTAGGCAGGGATAGATTCATGTTGTCCCA  749

seq1  AAACAGAAATCCTATCATTTTTATCCCTAGACACAATGGCCTCTTGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAATCCTATCATTTTTATCCCTAGACACAATGGCCTCTTGGTCA  799

seq1  TAAGTTTAGTTTACCATTGATAAACAGTGACAGAGCAGTTATCTTTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAGTTTACCATTGATAAACAGTGACAGAGCAGTTATCTTTTATA  849

seq1  ATCATTTTCCATCATCAACTCCATAGCCCAACTTTTAAGAATCTAGCAGC  900
      ||||||||||||||||||||||||||||| |||||  || ||||||||||
seq2  ATCATTTTCCATCATCAACTCCATAGCCC-ACTTT--AG-ATCTAGCAGC  895

seq1  ATACTTTGCCAAAGCATGATAGCACATTCTCAGGCTGGTAGCAGAAAATC  950
      |||||||| ||||||||||||||||| ||||| ||| ||||||| |||||
seq2  ATACTTTG-CAAAGCATGATAGCACA-TCTCA-GCT-GTAGCAG-AAATC  940

seq1  TCCAAGCCAGCCTGGGCTGGTTGCTAATTGTCATTAGGCCCAAGGAAAAA  1000
      | |||| |||||| |||||  |||| ||||||||   |||||    ||||
seq2  T-CAAG-CAGCCT-GGCTG--TGCT-ATTGTCAT--AGCCCA---GAAAA  979

seq1  AATCTTCAGGCCAAAGCTGCTGCAGTTATTATTCAATTTTTGGCATGAAA  1050
      |||||||||  | |||||||||||| |||||||||  |||||||||||||
seq2  AATCTTCAG--CCAAGCTGCTGCAG-TATTATTCA--TTTTGGCATGAAA  1024

seq1  ATGTTTATACTTTTGTAGAATTTATTTGTGTGTCTAATCTTGGTATTTTT  1100
         | ||||| ||||||||  ||| ||||| ||| |||||||| ||||||
seq2  ---TGTATAC-TTTGTAGA--TTA-TTGTG-GTC-AATCTTGGAATTTTT  1065

seq1: chr11_3948913_3949138
seq2: B6Ng01-035O06.g_73_298 (reverse)

seq1  TCCTCCTTCTCCTTCTCCTGTTTTTCCTTTCCCTCTCTCCTGTTGGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCTCCTTCTCCTGTTTTTCCTTTCCCTCTCTCCTGTTGGGAGC  50

seq1  CGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGT  100

seq1  GGTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGT  150

seq1  GCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCA  200

seq1  GGGAGTGACACGTCCGAGGCGAAGGA  226
      ||||||||||||||||||||||||||
seq2  GGGAGTGACACGTCCGAGGCGAAGGA  226