BAC Information

Click to search

BAC

Clone NameB6Ng01-036J03
Chromosome11 (Build37)
Map Location 111,007,525 - 111,143,599
singlet/doubletdoublet
Overlap geneLOC667003, LOC100041539
Upstream geneAbca9, Abca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
Downstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036J03.bB6Ng01-036J03.g
ACCDH864702DH864703
length4031,033
definitionDH864702|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J03, 5' end.DH864703|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,143,191 - 111,143,599)(111,007,525 - 111,008,570)
sequence
ttagagggagaaaacatgctcacccaggttccctggaggacacactggaa
gcagtgtcaccgaggggcttatctggggaccaaacaacaacaatgtccgt
agtaaatctctggctttatttggaacaggtcagagacccagggcttgtaa
ggagttgcagtgagttttctggtcggaattgaagcctcatataaggaata
gtcgctgatgatgtcaagaaaataaagagccagtcagtaccttgcagctt
tctgcaggaatagagtcatgttgtcctccgttcatcctggggctgtgggt
gggatgcaggatggggagaaggggtgagatgcaaggtggaggcacaattg
aacatagctgaatttagcttgtttttaattttatttgtgtgggtgctctt
ctt
gaattccaagagagctaatattttgaccaagagaaacagactttaaagta
ataaagcatctatcaaggcaagtcagtaaggagctattcagtggcactgt
ggcattacaggtgtgacattagttggttaggaaatttccttttgagtgtg
tgaatagtagggccacttttatgtggtcagtagaatagtaactctatact
ccatcccaagatggctacaccccagtcgctacaatatgaatctcactctg
gaatctggcttctgaggaacacatacagtttgcagataagatcaaactaa
aggcatagatcagggagattattctgagtgtctggatggcctcaatctaa
tcacatacattctcagaatcattgtcctttcttgctctcttggtgacaaa
ggaaacaacataaatgacattggagataggaaggaatatgaacagccttt
tgaaggacaaaaagtaagaaaatgggttcactttcagagcttccagaaaa
gactccacctcaagggctagattttgtcccagcaaactgtgtcaagatgt
ttagcctatacaaatagaaaaataataaatttgtgtcattttgaaatgct
gaatttggtttgttacaaatacaataggccacactgaggcacaaatgatg
agaacaaaaattaacaaatttaaaagcacaaccttgcagtgggaatagcc
atggataaaatcaaaatagttgtagaggtattaagaagaggaatgaagta
agtcctcatgtgctctcctgggcaataattggcattgattgtttggggag
taaccaactgatttgggattgaattttgaggcctaatttttcagaagaaa
tttaatctctggttgttctgaaccaggttaaaacttgtggaagaaaagcc
acaagctctagtgttggggattactactgaatacactaaattgctgtgta
caattatctctagtacttatgttatgccctatacagtttctctcatcctg
tccgaaactttccttttgcactgagcgtgctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111143191_111143599
seq2: B6Ng01-036J03.b_45_453 (reverse)

seq1  AAGAAGAGCACCCACACAAATGAATTAAAATACAAGCTAAATTCAGCTTT  50
      ||||||||||||||||||||| || | ||| ||||||||||||||||| |
seq2  AAGAAGAGCACCCACACAAATAAAATTAAAAACAAGCTAAATTCAGCTAT  50

seq1  GTTCAATTGTGCCTCCACCTTGCATCTCACCCCTTCTCCCCATCCTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTGTGCCTCCACCTTGCATCTCACCCCTTCTCCCCATCCTGCAT  100

seq1  CCCACCCACAGCCCCAGGATGAACGGAGGACAACATGACTCTATTCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACAGCCCCAGGATGAACGGAGGACAACATGACTCTATTCCTGC  150

seq1  AGAAAGCTGCAAGGTACTGACTGGCTCTTTATTTTCTTGACATCATCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGCAAGGTACTGACTGGCTCTTTATTTTCTTGACATCATCAGC  200

seq1  GACTATTCCTTATATGAGGCTTCAATTCCGACCAGAAAACTCACTGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTCCTTATATGAGGCTTCAATTCCGACCAGAAAACTCACTGCAAC  250

seq1  TCCTTACAAGCCCTGGGTCTCTGACCTGTTCCAAATAAAGCCAGAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAAGCCCTGGGTCTCTGACCTGTTCCAAATAAAGCCAGAGATTT  300

seq1  ACTACGGACATTGTTGTTGTTTGGTCCCCAGATAAGCCCCTCGGTGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGGACATTGTTGTTGTTTGGTCCCCAGATAAGCCCCTCGGTGACAC  350

seq1  TGCTTCCAGTGTGTCCTCCAGGGAACCTGGGTGAGCATGTTTTCTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAGTGTGTCCTCCAGGGAACCTGGGTGAGCATGTTTTCTCCCTC  400

seq1  TAAGAATTC  409
      |||||||||
seq2  TAAGAATTC  409

seq1: chr11_111007525_111008570
seq2: B6Ng01-036J03.g_67_1099

seq1  GAATTCCAAGAGAGCTAATATTTTGACCAAGAGAAACAGACTTTAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGAGCTAATATTTTGACCAAGAGAAACAGACTTTAAAGTA  50

seq1  ATAAAGCATCTATCAAGGCAAGTCAGTAAGGAGCTATTCAGTGGCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATCTATCAAGGCAAGTCAGTAAGGAGCTATTCAGTGGCACTGT  100

seq1  GGCATTACAGGTGTGACATTAGTTGGTTAGGAAATTTCCTTTTGAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTACAGGTGTGACATTAGTTGGTTAGGAAATTTCCTTTTGAGTGTG  150

seq1  TGAATAGTAGGGCCACTTTTATGTGGTCAGTAGAATAGTAACTCTATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTAGGGCCACTTTTATGTGGTCAGTAGAATAGTAACTCTATACT  200

seq1  CCATCCCAAGATGGCTACACCCCAGTCGCTACAATATGAATCTCACTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAAGATGGCTACACCCCAGTCGCTACAATATGAATCTCACTCTG  250

seq1  GAATCTGGCTTCTGAGGAACACATACAGTTTGCAGATAAGATCAAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGCTTCTGAGGAACACATACAGTTTGCAGATAAGATCAAACTAA  300

seq1  AGGCATAGATCAGGGAGATTATTCTGAGTGTCTGGATGGCCTCAATCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGATCAGGGAGATTATTCTGAGTGTCTGGATGGCCTCAATCTAA  350

seq1  TCACATACATTCTCAGAATCATTGTCCTTTCTTGCTCTCTTGGTGACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACATTCTCAGAATCATTGTCCTTTCTTGCTCTCTTGGTGACAAA  400

seq1  GGAAACAACATAAATGACATTGGAGATAGGAAGGAATATGAACAGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAACATAAATGACATTGGAGATAGGAAGGAATATGAACAGCCTTT  450

seq1  TGAAGGACAAAAAGTAAGAAAATGGGTTCACTTTCAGAGCTTCCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACAAAAAGTAAGAAAATGGGTTCACTTTCAGAGCTTCCAGAAAA  500

seq1  GACTCCACCTCAAGGGCTAGATTTTGTCCCAGCAAACTGTGTCAAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACCTCAAGGGCTAGATTTTGTCCCAGCAAACTGTGTCAAGATGT  550

seq1  TTAGCCTATACAAATAG-AAAATAATAAATTTGTGTCATTTTGAAATGCT  599
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAGCCTATACAAATAGAAAAATAATAAATTTGTGTCATTTTGAAATGCT  600

seq1  GAATTTGGTTTGTTACAAATACAATAGGCCACACTGAGGCACAAATGATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGTTTGTTACAAATACAATAGGCCACACTGAGGCACAAATGATG  650

seq1  AGAACAAAAATTAACAAAATTTAAAAGCACAACCTTTGCAGTGGGAATAG  699
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  AGAACAAAAATTAAC-AAATTTAAAAGCACAACC-TTGCAGTGGGAATAG  698

seq1  CCATGGAT-AAATCAAAATAGCTGTAGAGGGTATTAAG-AGAGGAATGAA  747
      |||||||| |||||||||||| |||||| ||||||||| |||||||||||
seq2  CCATGGATAAAATCAAAATAGTTGTAGA-GGTATTAAGAAGAGGAATGAA  747

seq1  GTTAGTCC-CATGTGC-CCCCTGGGCAATAA-TGGCA-TGATTGTTT-GG  792
      || ||||| ||||||| | |||||||||||| ||||| ||||||||| ||
seq2  GTAAGTCCTCATGTGCTCTCCTGGGCAATAATTGGCATTGATTGTTTGGG  797

seq1  GAGTAACCAACTGATTTGGGATTGGA-TTTGAGGCCTAATTTTTCAGAAG  841
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  GAGTAACCAACTGATTTGGGATTGAATTTTGAGGCCTAATTTTTCAGAAG  847

seq1  AAATAT-ATCCCTGG-TGCTCTGAACCAGGTTAAAAACTTGTGGCAAGAA  889
      |||| | ||| |||| || ||||||||||||| ||||||||||| |||||
seq2  AAATTTAATCTCTGGTTGTTCTGAACCAGGTT-AAAACTTGTGG-AAGAA  895

seq1  GAGGCCACAGGCTCTAGTGTGGGGGATTTACTACTGATATTACACTAAAT  939
       | |||||| |||||||||| ||||| |||||||||  | ||||||||||
seq2  -AAGCCACAAGCTCTAGTGTTGGGGA-TTACTACTG--AATACACTAAAT  941

seq1  GGCTGTGTAACCAAATTATCCTCTAGGTACTTATGTTTATGCCCTTATAC  989
       ||||||||    |||||| ||||| ||||||||| |||||||| |||||
seq2  TGCTGTGTA---CAATTAT-CTCTA-GTACTTATG-TTATGCCC-TATAC  984

seq1  TAGTTTTCCTCTCAATCCTGTCCAGAAACTTTTCTTTTTTGCACTGAGCT  1039
       |||||  ||||| ||||||||| |||||||| |  ||||||||||||| 
seq2  -AGTTT--CTCTC-ATCCTGTCC-GAAACTTTCC--TTTTGCACTGAGC-  1026

seq1  GTGCTTA  1046
      |||||||
seq2  GTGCTTA  1033