BAC Information

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BAC

Clone NameB6Ng01-039E10
Chromosome11 (Build37)
Map Location 52,360,152 - 52,427,825
singlet/doubletdoublet
Overlap genenone
Upstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E10.bB6Ng01-039E10.g
ACCDH866587DH866588
length6271,093
definitionDH866587|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E10, 5' end.DH866588|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,427,199 - 52,427,825)(52,360,152 - 52,361,249)
sequence
gaattctcacagctccctcccagtggcgttcttcctctaccaaggctgtg
cttctgaagcctacccaaacagtgctgccaactacagaccaagtattcaa
acatctgagcctatgggacattctcatacaggtattgaaatacaaagaaa
cccattataatgtactattaacatatgctgataaaataaacctttgggtc
ccgaaagacggctcaagagcatctgtagagggcatgagttcaattcctag
cacccacaactggcagctcacaaccacctgtaactccagtcccagggaac
ctgacaccttcttctggatactgagagcatcaggcacatacatggtgctc
atatgtacacacaggcactcacacgtgtagataaaaatgtttcaatttta
aagaaacttaaaaagtggtaacacaactgaccaggctgggacctctgagt
ggtatcgctgcctgttagtcaccaaaaggaattctggcttgtacctttgg
gtcatttgtgcttctctaagtaatcccagtaaattcattgggtcatcaag
cccccacccccacccccaaacattattgagtcatttggggaggtttttgg
ttttggttttggttttttggttttttg
gaattctcctgcacatggctaaagggattccagtagactggcggctgtca
ggaaccccagccctcaagaggtggggataggatgtccctggaacaagctg
gctagttagatcagctgtgagcctgggagatgctgcctctacatacaagg
ctcaaagtgattgagaaagacacccatgccaacctctgcacgtgagcttg
tgccttcatacacacatgcacctacagacttgtgaacacacacacacaca
cacacacacacacacacacacacacacacacacacacacacactgacgaa
gcatctggaatggcttattctgtccggaagcatcttgtttccctacccgt
ctcgtgggctgcagttggaaagatcagttctgaacctgactgtcccagac
tcccactcactgctgggatagttgggggagaggccagtctaaaggccttt
gaggcctttctgtgctaaagtgatgcagcgtcacgactggaaatcagctc
tttgtgatgctaagtagccttgagagatgttgccatgtttttgcatatta
atatttgctttaatgaacagattagaatcatttatgcataatttattgaa
aaagatgctataaaagatgtttaaaatcatttctttccttaacacacctt
taatattgctttttgggtttattcctctaatacccatagaaaaatacttc
atccactattttagaagctaggccctgcagtcaattaccctctgtgctgg
ttacttcctgtcaacttgatacaaactggagccatttgggaagagggaac
ctcacttgaggaattgcctccatcagatggcctgcagataagtctatggg
agcattttcttgattagtgattgatgtgggagggcccagcccactggttc
taagttgtatataaggaagcagactgagcaagccagggaacactgctctc
tatgtctttttgtagtgggaaattttaacatgagttctggagtgaatgga
gcagaggctttgagaaaccatttgcagatagtgattgtttctgaggttta
ttggagttcttttctgaagactcgcaaagcctttacgttactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_52427199_52427825
seq2: B6Ng01-039E10.b_48_674 (reverse)

seq1  CAAAAAACCAAAAAACCAAAACCAAAACCAAAAACCTCCCCAAATGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCAAAAAACCAAAACCAAAACCAAAAACCTCCCCAAATGACTC  50

seq1  AATAATGTTTGGGGGTGGGGGTGGGGGCTTGATGACCCAATGAATTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTTTGGGGGTGGGGGTGGGGGCTTGATGACCCAATGAATTTACT  100

seq1  GGGATTACTTAGAGAAGCACAAATGACCCAAAGGTACAAGCCAGAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTACTTAGAGAAGCACAAATGACCCAAAGGTACAAGCCAGAATTCC  150

seq1  TTTTGGTGACTAACAGGCAGCGATACCACTCAGAGGTCCCAGCCTGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGACTAACAGGCAGCGATACCACTCAGAGGTCCCAGCCTGGTCA  200

seq1  GTTGTGTTACCACTTTTTAAGTTTCTTTAAAATTGAAACATTTTTATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTACCACTTTTTAAGTTTCTTTAAAATTGAAACATTTTTATCTA  250

seq1  CACGTGTGAGTGCCTGTGTGTACATATGAGCACCATGTATGTGCCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTGAGTGCCTGTGTGTACATATGAGCACCATGTATGTGCCTGATG  300

seq1  CTCTCAGTATCCAGAAGAAGGTGTCAGGTTCCCTGGGACTGGAGTTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTATCCAGAAGAAGGTGTCAGGTTCCCTGGGACTGGAGTTACAG  350

seq1  GTGGTTGTGAGCTGCCAGTTGTGGGTGCTAGGAATTGAACTCATGCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTGAGCTGCCAGTTGTGGGTGCTAGGAATTGAACTCATGCCCTC  400

seq1  TACAGATGCTCTTGAGCCGTCTTTCGGGACCCAAAGGTTTATTTTATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGCTCTTGAGCCGTCTTTCGGGACCCAAAGGTTTATTTTATCAG  450

seq1  CATATGTTAATAGTACATTATAATGGGTTTCTTTGTATTTCAATACCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTAATAGTACATTATAATGGGTTTCTTTGTATTTCAATACCTGT  500

seq1  ATGAGAATGTCCCATAGGCTCAGATGTTTGAATACTTGGTCTGTAGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATGTCCCATAGGCTCAGATGTTTGAATACTTGGTCTGTAGTTGG  550

seq1  CAGCACTGTTTGGGTAGGCTTCAGAAGCACAGCCTTGGTAGAGGAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGTTTGGGTAGGCTTCAGAAGCACAGCCTTGGTAGAGGAAGAAC  600

seq1  GCCACTGGGAGGGAGCTGTGAGAATTC  627
      |||||||||||||||||||||||||||
seq2  GCCACTGGGAGGGAGCTGTGAGAATTC  627

seq1: chr11_52360152_52361249
seq2: B6Ng01-039E10.g_69_1161

seq1  GAATTCTCCTGCACATGGCTAAAGGGATTCCAGTAGACTGGCGGCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGCACATGGCTAAAGGGATTCCAGTAGACTGGCGGCTGTCA  50

seq1  GGAACCCCAGCCCTCAAGAGGTGGGGATAGGATGTCCCTGGAACAAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCCAGCCCTCAAGAGGTGGGGATAGGATGTCCCTGGAACAAGCTG  100

seq1  GCTAGTTAGATCAGCTGTGAGCCTGGGAGATGCTGCCTCTACATACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTAGATCAGCTGTGAGCCTGGGAGATGCTGCCTCTACATACAAGG  150

seq1  CTCAAAGTGATTGAGAAAGACACCCATGCCAACCTCTGCACGTGAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTGATTGAGAAAGACACCCATGCCAACCTCTGCACGTGAGCTTG  200

seq1  TGCCTTCATACACACATGCACCTACAGACTTGTGAACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCATACACACATGCACCTACAGACTTGTGAACACACACACACACA  250

seq1  CACACACACACACACACACACACACACACACACACACACACACTGACGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACTGACGAA  300

seq1  GCATCTGGAATGGCTTATTCTGTCCGGAAGCATCTTGTTTCCCTACCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGAATGGCTTATTCTGTCCGGAAGCATCTTGTTTCCCTACCCGT  350

seq1  CTCGTGGGCTGCAGTTGGAAAGATCAGTTCTGAACCTGACTGTCCCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGGGCTGCAGTTGGAAAGATCAGTTCTGAACCTGACTGTCCCAGAC  400

seq1  TCCCACTCACTGCTGGGATAGTTGGGGGAGAGGCCAGTCTAAAGGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCACTGCTGGGATAGTTGGGGGAGAGGCCAGTCTAAAGGCCTTT  450

seq1  GAGGCCTTTCTGTGCTAAAGTGATGCAGCGTCACGACTGGAAATCAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTTCTGTGCTAAAGTGATGCAGCGTCACGACTGGAAATCAGCTC  500

seq1  TTTGTGATGCTAAGTAGCCTTGAGAGATGTTGCCATGTTTTTGCATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGCTAAGTAGCCTTGAGAGATGTTGCCATGTTTTTGCATATTA  550

seq1  ATATTTGCTTTAATGAACAGATTAGAATCATTTATGCATAATTTATTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTTTAATGAACAGATTAGAATCATTTATGCATAATTTATTGAA  600

seq1  AAAGATGCTATAAAAGATGTTTAAAATCATTTCTTTCCTTAACACACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCTATAAAAGATGTTTAAAATCATTTCTTTCCTTAACACACCTT  650

seq1  TAATATTGCTTTTTGGGTTTATTCCTCTAATACCCATAGAAAAATACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGCTTTTTGGGTTTATTCCTCTAATACCCATAGAAAAATACTTC  700

seq1  ATCCACTATTTTAGAAGCTAGGCCCTGCAGTCAATTACCCTCTGTGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTATTTTAGAAGCTAGGCCCTGCAGTCAATTACCCTCTGTGCTGG  750

seq1  TTACTTCCTGTCAACTTGATACAAACTGGAGCCATTTGGGAAGAGGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTGTCAACTTGATACAAACTGGAGCCATTTGGGAAGAGGGAAC  800

seq1  CTCACTTGAGGAATTGCCTCCATCAGATTGGCCTGCAGATAAGTCTATGG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCACTTGAGGAATTGCCTCCATCAGA-TGGCCTGCAGATAAGTCTATGG  849

seq1  GAGCATTTTCTTGATTAGTGATTGATGTGGGAGGGCCCAGCCCACTGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGCATTTTCTTGATTAGTGATTGATGTGGGAGGGCCCAGCCCACTGGTT  899

seq1  CTAAGTTGTATATAAGGAAAGCAGACTGAGCAAGCCAGGGAACACTGCTC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  CTAAGTTGTATATAAGG-AAGCAGACTGAGCAAGCCAGGGAACACTGCT-  947

seq1  CTCTATGGTCTTTTGTAGTGGGAAA-TTTAACATGAGTTCTGGAGTG-AT  998
      |||||||   ||||||||||||||| ||||||||||||||||||||| ||
seq2  CTCTATGTCTTTTTGTAGTGGGAAATTTTAACATGAGTTCTGGAGTGAAT  997

seq1  GGAGCAGAGGCTTTGAAGAAACCATTTGCAGATAGTGATTGTTATCTGAG  1048
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  GGAGCAGAGGCTTTG-AGAAACCATTTGCAGATAGTGATTGTT-TCTGAG  1045

seq1  GTTTA-TGGAGTTTCTTTTCCTGAAGGACTCGCAGAGCCTTTACGTAACT  1097
      ||||| ||||| ||||||| ||||| |||||||| ||||||||||| |||
seq2  GTTTATTGGAG-TTCTTTT-CTGAA-GACTCGCAAAGCCTTTACGTTACT  1092

seq1  T  1098
      |
seq2  T  1093