BAC Information

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BAC

Clone NameB6Ng01-039G20
Chromosome11 (Build37)
Map Location 84,080,159 - 84,225,067
singlet/doubletdoublet
Overlap geneAcaca, LOC100043671
Upstream geneSlfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997
Downstream geneAatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039G20.bB6Ng01-039G20.g
ACCDH866701DH866702
length1,1231,056
definitionDH866701|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G20, 5' end.DH866702|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,080,159 - 84,081,291)(84,224,006 - 84,225,067)
sequence
gaattccagaacagccaggtctacacagaaaaacacagagaaaccctgtc
tcgagaaaccctgtctcgaaaaaccaaacaaacaaacaaaaaaatcgaga
acatgggccacaaagtaaagaggagctatttatagtatttatacctgcaa
caggattagtactagtacgtaaaaggcaatcaaatagataaatgggcaaa
agagagtaaaagatatttcacagaagagaaagcacaaataatccataaac
ttcaagaaaatgcttagtcccattaccaatcacagaaataggagcccaaa
tcacagatttttacaatcacattgtcatcttatactgtctctgggagtgg
agtgcaaatggcatgattgccttaggaaactgcatgtccatattgaataa
gtctttcataatgctgagtttttatttatgctctttagcctagtggtctt
actccaaaatataaggcctgttggtgtcactagtggtcatagtagaaaaa
gaaaagaaagaaagaaagcagagggaaaccctctgtatacaaatagaatg
aatggcctttgaattctaggatcttcacagtggaatattatggagcactg
agaatagatgattcctaggaacacgtataaacaaatgagtcaatacatag
gccttctggttttttaatcaggttcaaaaccaggatataagaagttagat
atatcagtgataaatgtaaagagaacaaaagaataattattataaattca
cctgagtatttctgaagaagaatacatagcaggtcacttgggagaccgag
gcaggaagattgccaaatttaaggccagcgtcgggccagatactgagaaa
tgcctgtttagaagagggggttttggtgattatgactggagagacggttc
aacagtcatagcacttactgcagagtcacagccgcctgcaactctagttc
tagagggtcctcgctcctcttctccacgctgagcttctgcatacatgtgg
gcgcataagtcatacataaataaattagtcttcttttttccctggctttc
agacagggtttttctgtgagcctgacggtctgggaccgggtactggatcc
agaaatctgcctgccctttcttc
gaattccagtctgggcctgtggggaaggcaaggatatggcctggagggtc
acagagaatgcctgggcgctgtgagctctgtgtcagggcggctcacctgg
agctacaccactaccacacacacactcagctaagctgcaccaaatcacaa
atcacctggagctaccccaccaccacacacacacacacacacatacacac
acagctaagctgaaccaaatcacaaatcacctggagctacaccaccacca
ccacacacacacacacacacacacacacacacacacacacacagctaagc
tgaaccaaatccacagtggccagccctagaagagtttgagagagaacagt
aagacgaagacagttgtcgtatgatttgaccctaacaggtttcattttgt
actccaatttgctaataaaggagccagtgccagggacagccgggcccctc
ctttatcaagctttcctagaggccccgggagacagcagctgaggggtgca
gccctgctgctgaggagtgggaaccaatagaaaagaagaaaccagcgatc
agagagggcagctggggcaggtgacctgaagagcctggattccagtgcat
ggcacccttgtcacccctgtcccttgctagttcctcaggcactgtgtagc
tttgttactgaggtgtaatgaacagttcaaaatccacccttttttggggg
gggggtaggattttatcttttcttttgcatgtggggctgttcttgcctgc
gtgtacactatatacatgcctttgtgtctgcagaagagggtgtcgcatct
ttggaactagagtcactggtggccaccatgtgagtactaagaaattgacc
ctggtcctctggaagaagacctgcttgagccatttcctggtcccatggaa
acctagcactgaaacatctcgttagtggttcttaagaaggctgcagtgtg
atgttgtcaatgctccatctgatgacagtgcatccctggccctgagccca
ggaatactcctaattatagctgcaggcacaattctgtgatggtttaacag
aaacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84080159_84081291
seq2: B6Ng01-039G20.b_45_1167

seq1  GAATTCCAGAACAGCCAGGTCTACACAGAAAAACACAGAGAAACCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAGCCAGGTCTACACAGAAAAACACAGAGAAACCCTGTC  50

seq1  TCGAGAAACCCTGTCTCGAAAAACCAAACAAACAAACAAAAAAATCGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAAACCCTGTCTCGAAAAACCAAACAAACAAACAAAAAAATCGAGA  100

seq1  ACATGGGCCACAAAGTAAAGAGGAGCTATTTATAGTATTTATACCTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCCACAAAGTAAAGAGGAGCTATTTATAGTATTTATACCTGCAA  150

seq1  CAGGATTAGTACTAGTACGTAAAAGGCAATCAAATAGATAAATGGGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTAGTACTAGTACGTAAAAGGCAATCAAATAGATAAATGGGCAAA  200

seq1  AGAGAGTAAAAGATATTTCACAGAAGAGAAAGCACAAATAATCCATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTAAAAGATATTTCACAGAAGAGAAAGCACAAATAATCCATAAAC  250

seq1  TTCAAGAAAATGCTTAGTCCCATTACCAATCACAGAAATAGGAGCCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAAATGCTTAGTCCCATTACCAATCACAGAAATAGGAGCCCAAA  300

seq1  TCACAGATTTTTACAATCACATTGTCATCTTATACTGTCTCTGGGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATTTTTACAATCACATTGTCATCTTATACTGTCTCTGGGAGTGG  350

seq1  AGTGCAAATGGCATGATTGCCTTAGGAAACTGCATGTCCATATTGAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAATGGCATGATTGCCTTAGGAAACTGCATGTCCATATTGAATAA  400

seq1  GTCTTTCATAATGCTGAGTTTTTATTTATGCTCTTTAGCCTAGTGGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCATAATGCTGAGTTTTTATTTATGCTCTTTAGCCTAGTGGTCTT  450

seq1  ACTCCAAAATATAAGGCCTGTTGGTGTCACTAGTGGTCATAGTAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAAATATAAGGCCTGTTGGTGTCACTAGTGGTCATAGTAGAAAAA  500

seq1  GAAAAGAAAGAAAGAAAGCAGAGGGAAACCCTCTGTATACAAATAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAGAAAGAAAGCAGAGGGAAACCCTCTGTATACAAATAGAATG  550

seq1  AATGGCCTTTGAATTCTAGGATCTTCACAGTGGAATATTATGGAGCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTTTGAATTCTAGGATCTTCACAGTGGAATATTATGGAGCACTG  600

seq1  AGAATAGATGATTCCTAGGAACACGTATAAACAAATGAGTCAATACATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGATGATTCCTAGGAACACGTATAAACAAATGAGTCAATACATAG  650

seq1  GCCTTCTGGTTTTTTAATCAGGTTCAAAACCAGGATATAAGAAGTTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGGTTTTTTAATCAGGTTCAAAACCAGGATATAAGAAGTTAGAT  700

seq1  ATATCAGTGATAAATGTAAAGAGAACAAAAGAATAATTATTATAAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTGATAAATGTAAAGAGAACAAAAGAATAATTATTATAAATTCA  750

seq1  CCTGAGTATTTCTGAAGAAGAATACATAGCAGGTCACTTGGGAGACCGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTATTTCTGAAGAAGAATACATAGCAGGTCACTTGGGAGACCGAG  800

seq1  GCAGGAAGATTGCCAAATTTAAGGCCAGCGTCGGGCCAGATACTGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGATTGCCAAATTTAAGGCCAGCGTCGGGCCAGATACTGAGAAA  850

seq1  TGCCTGTTTAGAAGAGGGGG-TTTGGTGATTATGACTGGAGAGACGGTTC  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCCTGTTTAGAAGAGGGGGTTTTGGTGATTATGACTGGAGAGACGGTTC  900

seq1  AACAGTCATAGCACTTACTGCAGAGTCACAGCCGCCTGCAACTCTAGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCATAGCACTTACTGCAGAGTCACAGCCGCCTGCAACTCTAGTTC  950

seq1  TAGAGGGTCCCTCGCCTCTCCTCTCCACGCTGAGCTTCTGCATACATGT-  998
      |||||||| ||||||  ||| |||||||||||||||||||||||||||| 
seq2  TAGAGGGT-CCTCGCTCCTCTTCTCCACGCTGAGCTTCTGCATACATGTG  999

seq1  GGCGCATAAGTACATACAATAAAATTAAATTAGTCTTCTTTTTTCCCCTG  1048
      ||||||||||| ||||| |||||  ||||||||||||||||||| |||||
seq2  GGCGCATAAGT-CATAC-ATAAA--TAAATTAGTCTTCTTTTTT-CCCTG  1044

seq1  GCTTTTCAAGACAGGGTTTTTCTGTGTAGCCCTGACTGTCTTGGAACCGG  1098
      |||||   |||||||||||||||||| || |||||| ||| ||| |||||
seq2  GCTTT--CAGACAGGGTTTTTCTGTG-AG-CCTGACGGTC-TGGGACCGG  1089

seq1  CTCTCTTGAATTCACAGAAATCTGCCTGCC---TCTTC  1133
       |  || ||  || ||||||||||||||||   |||||
seq2  GT-ACTGGA--TC-CAGAAATCTGCCTGCCCTTTCTTC  1123

seq1: chr11_84224006_84225067
seq2: B6Ng01-039G20.g_69_1124 (reverse)

seq1  CCGTTTCTGTTAAACCATCCAGGAATGGTGCCTGCAGCTACAGTTAGGAA  50
      |||||||||||||||||||   |||| ||||||||||||| | |||||| 
seq2  CCGTTTCTGTTAAACCATCACAGAATTGTGCCTGCAGCTATAATTAGGA-  49

seq1  GTTATTCCTGGGCTCAGGGCCAGGGATGCACTGTCAATCAGAATGGAGCA  100
        ||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  -GTATTCCTGGGCTCAGGGCCAGGGATGCACTGTC-ATCAG-ATGGAGCA  96

seq1  TTGACAGCATCACACTGCAGCCTTCCTGAGGACCACTGAACGAGATGTTT  150
      |||||| |||||||||||||||||| | || |||||| ||||||||||||
seq2  TTGACAACATCACACTGCAGCCTTCTTAAGAACCACT-AACGAGATGTTT  145

seq1  ACAGTGGCTGGGTTTCCATGGGGACCAGGAAATGGCTC-AGCAGTTCTTC  199
       |||| ||| ||||||||| |||||||||||||||||| ||||| |||||
seq2  -CAGT-GCTAGGTTTCCAT-GGGACCAGGAAATGGCTCAAGCAGGTCTTC  192

seq1  TTCCAGAGGACCAGGGTTCAATTCTTAGTACTCACATGGTGGCCACCAGT  249
      |||||||||||||||||  | |||||||||||||||||||||||||||||
seq2  TTCCAGAGGACCAGGGTCAATTTCTTAGTACTCACATGGTGGCCACCAGT  242

seq1  GACTCTAGTTCCAAAGATGCGACACCCTCTTCTGCAGACAC-AAGGCATG  298
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACTCTAGTTCCAAAGATGCGACACCCTCTTCTGCAGACACAAAGGCATG  292

seq1  TATATAGTGTACACGCAGGCAAGAACAGCCCCACATGCAAAAGAAAAGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTGTACACGCAGGCAAGAACAGCCCCACATGCAAAAGAAAAGAT  342

seq1  AAAATCCTACCCCCCCCCCAAAAAAGGGTGGATTTTGAACTGTTCATTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTACCCCCCCCCCAAAAAAGGGTGGATTTTGAACTGTTCATTAC  392

seq1  ACCTCAGTAACAAAGCTACACAGTGCCTGAGGAACTAGCAAGGGACAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTAACAAAGCTACACAGTGCCTGAGGAACTAGCAAGGGACAGGG  442

seq1  GTGACAAGGGTGCCATGCACTGGAATCCAGGCTCTTCAGGTCACCTGCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGGGTGCCATGCACTGGAATCCAGGCTCTTCAGGTCACCTGCCC  492

seq1  CAGCTGCCCTCTCTGATCGCTGGTTTCTTCTTTTCTATTGGTTCCCACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCCTCTCTGATCGCTGGTTTCTTCTTTTCTATTGGTTCCCACTC  542

seq1  CTCAGCAGCAGGGCTGCACCCCTCAGCTGCTGTCTCCCGGGGCCTCTAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGCAGGGCTGCACCCCTCAGCTGCTGTCTCCCGGGGCCTCTAGG  592

seq1  AAAGCTTGATAAAGGAGGGGCCCGGCTGTCCCTGGCACTGGCTCCTTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGATAAAGGAGGGGCCCGGCTGTCCCTGGCACTGGCTCCTTTAT  642

seq1  TAGCAAATTGGAGTACAAAATGAAACCTGTTAGGGTCAAATCATACGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATTGGAGTACAAAATGAAACCTGTTAGGGTCAAATCATACGACA  692

seq1  ACTGTCTTCGTCTTACTGTTCTCTCTCAAACTCTTCTAGGGCTGGCCACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTCGTCTTACTGTTCTCTCTCAAACTCTTCTAGGGCTGGCCACT  742

seq1  GTGGATTTGGTTCAGCTTAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTGGTTCAGCTTAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  792

seq1  GTGTGTGTGTGTGGTGGTGGTGGTGTAGCTCCAGGTGATTTGTGATTTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGGTGGTGGTGGTGTAGCTCCAGGTGATTTGTGATTTGG  842

seq1  TTCAGCTTAGCTGTGTGTGTATGTGTGTGTGTGTGTGTGTGGTGGTGGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTAGCTGTGTGTGTATGTGTGTGTGTGTGTGTGTGGTGGTGGGG  892

seq1  TAGCTCCAGGTGATTTGTGATTTGGTGCAGCTTAGCTGAGTGTGTGTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCAGGTGATTTGTGATTTGGTGCAGCTTAGCTGAGTGTGTGTGTG  942

seq1  GTAGTGGTGTAGCTCCAGGTGAGCCGCCCTGACACAGAGCTCACAGCGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTGTAGCTCCAGGTGAGCCGCCCTGACACAGAGCTCACAGCGCC  992

seq1  CAGGCATTCTCTGTGACCCTCCAGGCCATATCCTTGCCTTCCCCACAGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTCTCTGTGACCCTCCAGGCCATATCCTTGCCTTCCCCACAGGC  1042

seq1  CCAGACTGGAATTC  1062
      ||||||||||||||
seq2  CCAGACTGGAATTC  1056