BAC Information

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BAC

Clone NameB6Ng01-039J19
Chromosome11 (Build37)
Map Location 88,588,276 - 88,732,209
singlet/doubletdoublet
Overlap geneAkap1
Upstream geneBzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945
Downstream geneScpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039J19.bB6Ng01-039J19.g
ACCDH866835DH866836
length1,1641,158
definitionDH866835|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J19, 5' end.DH866836|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,731,034 - 88,732,209)(88,588,276 - 88,589,435)
sequence
gaattcccacttaacaatgtttccaaatgtagagtactagctactattag
aatcctgggtggtcacaatgttttaatgatgtgtgtgtgtacgtgcgtgc
gcgcatgcatgttctctaggcagatctacaaccatttccacgaggaggca
ctttctagggtgatggatgatgtctattttactccaatacatttgcctgc
cgcctttcttccttttttctttgacagatttagtatgttgccctagctga
cttccaactcctatgtagccacattcaaggatgatcttgaacttcagttt
gttttctgagacaaggtttccccttgtagcctgaccagtcctggagctta
ctctgttgatgaggttagcctctaaatcacagggctctgcttgcctctgc
ctcctgagtgctgagattcccagcccgtgccaccatctcctggctatcct
tgaacttcttaccgtctgacctccaccagtgctataattacaggcctgtg
ttatcacacccagtttgtacaatgctggggaccaaatctagggctttgtg
tatgacaggcaggcattgtcaaccgagcaaatcctagccagtatctgcca
tgttttagaatcccagccccagacatctatctgccatgctttagaatgag
gagagccagaaagtggttctggagagatggcagggcaaagtgtggaggct
ggggacaatggaaactaggctgcaaggtgccagtttctatataatatccc
ccacctctcctgggaacaggacaccttggctatctcacccacaaggaagc
tcagtttccctgagttaattaggattgctggattgctatgctgcagtggt
gtgtagaacagctatgcaaactacccagatatacacagcacactggatta
tctagatcccagcattcaagcagctgcacactggcgtccagcaagcttag
atagcctctgggaggctctaactgtcctttctcagaatatctctcagcat
tccatgaagtagctaacagctccaggacatgtttggttcctacctggaag
gcttatgttagctttagtagacgcatcctgccagaagtgttaaaaatttt
ctcatgctccagttcagcagaaatgtccatgggagaaagcctggaggtgg
aggggtgggctctg
gaattcagggatattctgtgttcctccaatagaaaataagcatgtatatc
aagatcctagggcagcccttgccctgacaccgtgcaataagggaaagtca
ctgggggtaggaagtaactggaaagaaaaaagacggatgtgagataaaac
aaaactttggtttgttttgtttttcgagacagggtttctctgtgtagccc
aggttgttctggaacttattctgtagaccaggctggcctcaaactcagaa
atcctcctgcctctgcctctcaagtgctgggattaaaggagtacgccacc
actgcctggctgagataaagcaaactgaatgtttttcaaacagccttact
gatctgacacctttatttataattattttcttctaacgttgtctgataga
tatgcaaaagcctattttaatttcaatgagagagaaaatgttttgttttg
tttttttctaactggggaagagaatacaaaagcttttctggagtgtaaaa
aagaacacctaaaatatatttatctaatatatttcctttttctatttttc
attttcttttccatgttctcattggacagatttggaaatctggtgttttg
gctaacgagttgtgttcctcttcgcctcttatgactctcctttctcacct
ccagttcaaaatgactgcaagcagccaaggtgtgccagctcggcttctca
ggggtgaccttcagaggtagtgggggcaggcctcagaaaacatcaccttt
aggagttttaagaggtgaccagggagtttgactttagtccccttctgctt
cggcaggagactggcttgccaggacacggtaggttataagaacttaaaca
ggaagtttctgtacttctataaaaaaagaaaagccaagaccctagggctg
ctctcctgtggccgttacactgtttaacttctgcctgcctttatgtcatt
gctacgctatcttataacggaggtaaatattttattaaacatcttcgtgc
tcggcagttaggaagccttctgctgcctaggcctggcagtcgcccagcgt
tgccaaggaggggaccaagggtgggctcgaaagcttcacagagaacttgc
ccaagcttcaccgttctgtcaatactaacacctggaaaacattttctctc
tctggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88731034_88732209
seq2: B6Ng01-039J19.b_44_1207 (reverse)

seq1  CAGAGCCCACCCCTCCACTCTTCCCAGCTTCTTCCACTGGACATTTCTGC  50
      |||||||||||||||||  | |||  ||||  |||  |||||||||||||
seq2  CAGAGCCCACCCCTCCA--CCTCCAGGCTTTCTCCCATGGACATTTCTGC  48

seq1  TTGGAACTGGAGCATGAGAAAATCTATACCACTCTTGGCAGGATGGCGTC  100
      |  |||||||||||||||||||| | || ||||  ||||||||| |||||
seq2  T--GAACTGGAGCATGAGAAAATTTTTAACACTTCTGGCAGGAT-GCGTC  95

seq1  TACCTAAAGCTAACATAAGCCTTCCAGGTAGGAAACCAAACATGTCCTGT  150
      || ||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TA-CTAAAGCTAACATAAGCCTTCCAGGTAGG-AACCAAACATGTCCTG-  142

seq1  GAGCCTGTTAGCTACTTCATTGGATGCCTGAGAGATATTCTGAGAAAGGA  200
      ||| |||||||||||||||| | ||| |||||||||||||||||||||||
seq2  GAG-CTGTTAGCTACTTCATGGAATG-CTGAGAGATATTCTGAGAAAGGA  190

seq1  CAGTTAGAGCCCTCCCAGAGGCTATCTAAGCTTGCTGGACGCCAGTGTGC  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGAG-CCTCCCAGAGGCTATCTAAGCTTGCTGGACGCCAGTGTGC  239

seq1  AGCTGCTTGAATGCTGGGATCTAGATAATCCAGTGTGCTGTGTATATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTGAATGCTGGGATCTAGATAATCCAGTGTGCTGTGTATATCTG  289

seq1  GGTAGTTTGCATAGCTGTTCTACACACCACTGCAGCATAGCAATCCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTGCATAGCTGTTCTACACACCACTGCAGCATAGCAATCCAGCA  339

seq1  ATCCTAATTAACTCAGGGAAACCTGAGCTTCCTTGTGGGTGAGATAGCCA  400
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCCTAATTAACTCAGGGAAA-CTGAGCTTCCTTGTGGGTGAGATAGCCA  388

seq1  AGGTGTCCTGTTCCCAGGAGAGGTGGGGGATATTATATAGAAACTGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCTGTTCCCAGGAGAGGTGGGGGATATTATATAGAAACTGGCAC  438

seq1  CTTGCAGCCTAGTTTCCATTGTCCCCAGCCTCCACACTTTGCCCTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGCCTAGTTTCCATTGTCCCCAGCCTCCACACTTTGCCCTGCCAT  488

seq1  CTCTCCAGAACCACTTTCTGGCTCTCCTCATTCTAAAGCATGGCAGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGAACCACTTTCTGGCTCTCCTCATTCTAAAGCATGGCAGATAG  538

seq1  ATGTCTGGGGCTGGGATTCTAAAACATGGCAGATACTGGCTAGGATTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGGGCTGGGATTCTAAAACATGGCAGATACTGGCTAGGATTTGC  588

seq1  TCGGTTGACAATGCCTGCCTGTCATACACAAAGCCCTAGATTTGGTCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTGACAATGCCTGCCTGTCATACACAAAGCCCTAGATTTGGTCCCC  638

seq1  AGCATTGTACAAACTGGGTGTGATAACACAGGCCTGTAATTATAGCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTACAAACTGGGTGTGATAACACAGGCCTGTAATTATAGCACTG  688

seq1  GTGGAGGTCAGACGGTAAGAAGTTCAAGGATAGCCAGGAGATGGTGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTCAGACGGTAAGAAGTTCAAGGATAGCCAGGAGATGGTGGCAC  738

seq1  GGGCTGGGAATCTCAGCACTCAGGAGGCAGAGGCAAGCAGAGCCCTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGAATCTCAGCACTCAGGAGGCAGAGGCAAGCAGAGCCCTGTGA  788

seq1  TTTAGAGGCTAACCTCATCAACAGAGTAAGCTCCAGGACTGGTCAGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGCTAACCTCATCAACAGAGTAAGCTCCAGGACTGGTCAGGCTA  838

seq1  CAAGGGGAAACCTTGTCTCAGAAAACAAACTGAAGTTCAAGATCATCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAAACCTTGTCTCAGAAAACAAACTGAAGTTCAAGATCATCCTT  888

seq1  GAATGTGGCTACATAGGAGTTGGAAGTCAGCTAGGGCAACATACTAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGCTACATAGGAGTTGGAAGTCAGCTAGGGCAACATACTAAATC  938

seq1  TGTCAAAGAAAAAAGGAAGAAAGGCGGCAGGCAAATGTATTGGAGTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGAAAAAAGGAAGAAAGGCGGCAGGCAAATGTATTGGAGTAAAA  988

seq1  TAGACATCATCCATCACCCTAGAAAGTGCCTCCTCGTGGAAATGGTTGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATCATCCATCACCCTAGAAAGTGCCTCCTCGTGGAAATGGTTGTA  1038

seq1  GATCTGCCTAGAGAACATGCATGCGCGCACGCACGTACACACACACATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTAGAGAACATGCATGCGCGCACGCACGTACACACACACATCA  1088

seq1  TTAAAACATTGTGACCACCCAGGATTCTAATAGTAGCTAGTACTCTACAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATTGTGACCACCCAGGATTCTAATAGTAGCTAGTACTCTACAT  1138

seq1  TTGGAAACATTGTTAAGTGGGAATTC  1176
      ||||||||||||||||||||||||||
seq2  TTGGAAACATTGTTAAGTGGGAATTC  1164

seq1: chr11_88588276_88589435
seq2: B6Ng01-039J19.g_68_1225

seq1  GAATTCAGGGATATTCTGTGTTCCTCCAATAGAAAATAAGCATGTATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATATTCTGTGTTCCTCCAATAGAAAATAAGCATGTATATC  50

seq1  AAGATCCTAGGGCAGCCCTTGCCCTGACACCGTGCAATAAGGGAAAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTAGGGCAGCCCTTGCCCTGACACCGTGCAATAAGGGAAAGTCA  100

seq1  CTGGGGGTAGGAAGTAACTGGAAAGAAAAAAGACGGATGTGAGATAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTAGGAAGTAACTGGAAAGAAAAAAGACGGATGTGAGATAAAAC  150

seq1  AAAACTTTGGTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTGGTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  200

seq1  AGGTTGTTCTGGAACTTATTCTGTAGACCAGGCTGGCCTCAAACTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTCTGGAACTTATTCTGTAGACCAGGCTGGCCTCAAACTCAGAA  250

seq1  ATCCTCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGAGTACGCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGAGTACGCCACC  300

seq1  ACTGCCTGGCTGAGATAAAGCAAACTGAATGTTTTTCAAACAGCCTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGGCTGAGATAAAGCAAACTGAATGTTTTTCAAACAGCCTTACT  350

seq1  GATCTGACACCTTTATTTATAATTATTTTCTTCTAACGTTGTCTGATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACACCTTTATTTATAATTATTTTCTTCTAACGTTGTCTGATAGA  400

seq1  TATGCAAAAGCCTATTTTAATTTCAATGAGAGAGAAAATGTTTTGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAAGCCTATTTTAATTTCAATGAGAGAGAAAATGTTTTGTTTTG  450

seq1  TTTTTTTCTAACTGGGGAAGAGAATACAAAAGCTTTTCTGGAGTGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTAACTGGGGAAGAGAATACAAAAGCTTTTCTGGAGTGTAAAA  500

seq1  AAGAACACCTAAAATATATTTATCTAATATATTTCCTTTTTCTATTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACCTAAAATATATTTATCTAATATATTTCCTTTTTCTATTTTTC  550

seq1  ATTTTCTTTTCCATGTTCTCATTGGACAGATTTGGAAATCTGGTGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTCCATGTTCTCATTGGACAGATTTGGAAATCTGGTGTTTTG  600

seq1  GCTAACGAGTTGTGTTCCTCTTCGCCTCTTATGACTCTCCTTTCTCACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACGAGTTGTGTTCCTCTTCGCCTCTTATGACTCTCCTTTCTCACCT  650

seq1  CCAGTTCAAAATGACTGCAAGCAGCCAAGGTGTGCCAGCTCGGCTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCAAAATGACTGCAAGCAGCCAAGGTGTGCCAGCTCGGCTTCTCA  700

seq1  GGGGTGACCTTCAGAGGTAGTGGGGGCAGGCCTCAGAAAACATCACCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACCTTCAGAGGTAGTGGGGGCAGGCCTCAGAAAACATCACCTTT  750

seq1  AGGAGTTTTAAGAGGTGACCAGGGAGTTTGACTTTAGTCCCCTTCTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTTAAGAGGTGACCAGGGAGTTTGACTTTAGTCCCCTTCTGCTT  800

seq1  CGGCAGGAGACTGGCTTGCCAGGACACGGTAGGTTATAAGAACTTAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGAGACTGGCTTGCCAGGACACGGTAGGTTATAAGAACTTAAACA  850

seq1  GGAAGTTTCTGTACTTCTATAAAAAAAGAAAAGCCAAGACCCTAGGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTCTGTACTTCTATAAAAAAAGAAAAGCCAAGACCCTAGGGCTG  900

seq1  CTCTCCTGTGGCCGTTACACTGTTTAACTTCTGCCTGCCTTTATGTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGTGGCCGTTACACTGTTTAACTTCTGCCTGCCTTTATGTCATT  950

seq1  GCTACGCTATTCTTATACACGGAGGTAAATATTTTATTAAACATCTTCGT  1000
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  GCTACGCTA-TCTTATA-ACGGAGGTAAATATTTTATTAAACATCTTCGT  998

seq1  GCTCGGCAGTTAGGAAGCCCTCTGCTGCCTAGGCCTGGCAGTCGCCCAGC  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTCGGCAGTTAGGAAGCCTTCTGCTGCCTAGGCCTGGCAGTCGCCCAGC  1048

seq1  GTTGCCAGGGAGGGGGACGAGGGTGGGCTCGAGAGCTTCACAGAGGAACT  1100
      ||||||| |||||||  | ||||||||||||| |||||||||||| |  |
seq2  GTTGCCAAGGAGGGGACCAAGGGTGGGCTCGAAAGCTTCACAGAGAACTT  1098

seq1  GCCCAAGC-TCACCGTTCTGTCCAGTACTTAACACCTGGAAACCATTTTC  1149
      |||||||| |||||||||||| || ||| ||||||||||||| |||||||
seq2  GCCCAAGCTTCACCGTTCTGT-CAATAC-TAACACCTGGAAAACATTTTC  1146

seq1  TC-CTCTGGCCT  1160
      || |||||||||
seq2  TCTCTCTGGCCT  1158