BAC Information

Click to search

BAC

Clone NameB6Ng01-039N23
Chromosome11 (Build37)
Map Location 65,912,011 - 65,912,931
singlet/doubletsinglet
Overlap geneDnahc9
Upstream geneAU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4, Zkscan6
Downstream geneGm879, LOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N23.bB6Ng01-039N23.g
ACCDH867012DH867013
length1,2811,063
definitionDH867012|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N23, 5' end.DH867013|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacgtatgcttcagaacccaaagaacctggcaagaaagctgctct
atcttgatggaagacctgcatctaacttgtacccacagactgtccaccaa
tactactgttttgtatctatttcccacatgtactggggaaaagccaacac
atcacactgtagtccacaaagcaggggcaaagtcatcttagcccacaatg
ttttagagcatgttttgtctcatgcctccacctcattaactttccaggtt
gtgttgacacatcataacatccttaagaatgaatggctcatagaatgaat
aaggaatttgcttgggattttacacacacttgaagatactatcaagataa
ctcccatcaaatatatcactttctcaaaagtgcttcacaagacagaagtt
atttcaggggtccttatagaacaacagggactgagttctgtcattctgca
tagtaatggagaataacattgacctgaggacctaacctcttgctgataag
caagatggtggcttattcattggagtaaaatgtctaggaaaggaatagct
ctgcaattgggaatgggtaaaagttgtctttttggaaagtgtcttaatta
gggtttactgctgtgaacagacacaatgaccaaggcaactcttataagga
caacattgaattggggctggcttacagattcagaggttcagtccattatc
atcaaagtaggaagcatggtagcatccaggcaggcatgatgcagatggag
ttgagagttctacttcttcatctgaaggctgctagtggaagactgccttc
caggcagctaggatgagggtcttaaagcccacatttgcagtgacacactt
actcccacaaggccacatcttctaataggtgccactccctgggccaccca
tatacaaaccattcattgccttccattccctggcccccataggcatgttc
aagcatatgaaactatgggggtcatacctaaacatagcataatgcaaaat
acattcaccccagttctaaagtccccatagtctttatagcaatcctcaat
aatgtaaaagtcctcttctggcttcattcaatcacctaactgtcatccca
aagccaagatagtaaaccacctggccaaaccccaaactctgccatcttca
ttctgatttcaagggtcctccgaattccactcccttttttccttgtgagt
cccaaacctctttcctggctgaaacctccactccgtgtgaacctctcctg
cacgaatccccgagttcgcgcatacctttta
gaattccaatgcttagaggcctcagagatgtgctgaacctagcaaaggag
accaggaagacatagctagtgaggtgatagagaaaccagaagagaaataa
actgtggaagtttgaatgaaaacggcctcataagctcatagtgagtggca
ctattaggaggtgtgaccttgttggaggaggtatgtcactggagtgggct
ttgaggtctcaggtgctcaagccaggcccagtgggtcacttggttttcct
gatgccaatccagatatagaattcttatttacctctccagcaccatgtct
gcctgcatgctaccatgctccccgccatgatgacaacggattaatctctg
aactgtaaggcagcccccaattaaatgttttctctataagagttgctgta
ggctgggcagtagtggcacacttggaagtcagaggcaggcagatttctga
gtttgaggccagcctggtctacagagtgagttccaggacagccaggccta
taacagagaaaccctgtctcgaacacccccccccaaaaaaaaaaaaccaa
accaaaccaaacaaaacaaaacaaaacaaaaaaacaaaaaacaaaaaaga
gttgcagtagtcatggtgtttcttcacagcaatggaagactgattaagaa
agcaaacatgaaggccacatgagggcctcagagaagtgtgtgtgtggtgg
ggaggattcgatgctgataagcagaagagagacaaaggtgggaatgtccc
cagaactgaccatttgaagatttctggtgactttgaaaaaaaaaaaaaaa
gatctcaggtgacacaacacagtgaagctgggtgggagaacaaatcaaag
aatcatgggcttttatttcttgtgcagtccacaggatgatatgactactt
ttctgatggaaaacactaagacattgaggagatacttcagatcggattag
cagtgaagccaggtgtgacacctcaagccctgtattcagtgttgagaagc
cggatgggaggatctgctgatttaggtcagctgggctgccaagtgagttc
agctcatgaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_65912011_65912931
seq2: B6Ng01-039N23.g_218_1130

seq1  CTATTAGGAGGTGTGACCTTGTTGGAGGAGGTATGTCACTGGAGTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGAGGTGTGACCTTGTTGGAGGAGGTATGTCACTGGAGTGGGCT  50

seq1  TTGAGGTCTCAGGTGCTCAAGCCAGGCCCAGTGGGTCACTTGGTTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCTCAGGTGCTCAAGCCAGGCCCAGTGGGTCACTTGGTTTTCCT  100

seq1  GATGCCAATCCAGATATAGAATTCTTATTTACCTCTCCAGCACCATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAATCCAGATATAGAATTCTTATTTACCTCTCCAGCACCATGTCT  150

seq1  GCCTGCATGCTACCATGCTCCCCGCCATGATGACAACGGATTAATCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATGCTACCATGCTCCCCGCCATGATGACAACGGATTAATCTCTG  200

seq1  AACTGTAAGGCAGCCCCCAATTAAATGTTTTCTCTATAAGAGTTGCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAAGGCAGCCCCCAATTAAATGTTTTCTCTATAAGAGTTGCTGTA  250

seq1  GGCTGGGCAGTAGTGGCACACTTGGAAGTCAGAGGCAGGCAGATTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCAGTAGTGGCACACTTGGAAGTCAGAGGCAGGCAGATTTCTGA  300

seq1  GTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGCCTA  350

seq1  TAACAGAGAAACCCTGTCTCGAACACCCCCCCCCAAAAAAAAAAAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGAAACCCTGTCTCGAACACCCCCCCCCAAAAAAAAAAAACCAA  400

seq1  ACCAAACCAAACAAAACAAAACAAAACAAAAAAACAAAAAACAAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAAACAAAACAAAACAAAACAAAAAAACAAAAAACAAAAAAGA  450

seq1  GTTGCAGTAGTCATGGTGTTTCTTCACAGCAATGGAAGACTGATTAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGTAGTCATGGTGTTTCTTCACAGCAATGGAAGACTGATTAAGAA  500

seq1  AGCAAACATGAAGGCCACATGAGGGCCTCAGAGAAGTGTGTGTGTGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACATGAAGGCCACATGAGGGCCTCAGAGAAGTGTGTGTGTGGTGG  550

seq1  GGAGGATTCGATGCTGATAAGCAGAAGAGAGACAAAGGTGGGAATGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCGATGCTGATAAGCAGAAGAGAGACAAAGGTGGGAATGTCCC  600

seq1  CAGAACTGACCATTTGAAGATTTCTGGTGACTTTGAAAAAAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGACCATTTGAAGATTTCTGGTGACTTTGAAAAAAAAAAAAAAA  650

seq1  GATCTCA-GTGACACAACACAGTGAAGCTGGGTGGGAGAACAAATCAAAG  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGGTGACACAACACAGTGAAGCTGGGTGGGAGAACAAATCAAAG  700

seq1  AATCATGGGCTTTTATTTCTTGTGCAGTCCACAGGATGATATGACTACCT  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATCATGGGCTTTTATTTCTTGTGCAGTCCACAGGATGATATGACTACTT  750

seq1  TTCTGATGGAAAACACTAAGACATTTGAGGAGATACTTCAGATC-GATTA  798
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TTCTGATGGAAAACACTAAGACA-TTGAGGAGATACTTCAGATCGGATTA  799

seq1  GCAGTGAAGCCAGGTGTGACACCTCAAG-CCTGTAATTTCAGTGTTTGAG  847
      |||||||||||||||||||||||||||| ||||||  ||||||| |||||
seq2  GCAGTGAAGCCAGGTGTGACACCTCAAGCCCTGTA--TTCAGTG-TTGAG  846

seq1  AGGCCGGGATGGGAGGATCCTTGCTGATTTAAGGTCAGCCTGGGCTGCAG  897
      | ||| |||||||||||||  ||||||||| ||||||| |||||||||  
seq2  AAGCC-GGATGGGAGGATC--TGCTGATTT-AGGTCAG-CTGGGCTGCCA  891

seq1  AGTGAGTTCAGGCTCATCTAGGCT  921
      |||||||||| ||||||  |||||
seq2  AGTGAGTTCA-GCTCAT-GAGGCT  913