BAC Information

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BAC

Clone NameB6Ng01-040A20
Chromosome11 (Build37)
Map Location 46,403,922 - 46,547,277
singlet/doubletdoublet
Overlap geneDppa1, EG237749, Timd2, LOC620678
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393
Downstream geneHavcr1, Timd4, Sgcd, LOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040A20.bB6Ng01-040A20.g
ACCDH867139DH867140
length542868
definitionDH867139|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A20, 5' end.DH867140|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,403,922 - 46,404,469)(46,546,397 - 46,547,277)
sequence
cttggtgctattccctctacactattccactacactactatttctgtctt
ggtgctcactgctcctatactcacccactgatttcacatcaggaaggagt
caatgaagaaataaaaggggaaggaaatgagagagcgcgggacatgggct
tgtttggagctatcacgggtttccttcacagttctacgtttctaaattgt
cttcaggcaatcttcatattttagtttatttcagaaagacatagcatctt
tgtcatagtgaatcagtttgtcacaatcaataaaatatttggtcttgcta
agagttaacaagggctgctgtactgacaccttcattgcagtccaggtgtt
gagaagagcagattggcaagagggtgttaatttctatttcagtctgagtg
attcctgacaccacatcagtgacattcagccatggtagccaaagacagca
gggtgctggacctcggtccacattctcagtgctattctatagagttctag
gaaaggaataggtgtcttgttaattcttttgggtggggggag
gaattcctaagacttacaaagaaagaggatgaaccctccttagtgatttt
tcttcctattccacattgacacaatagtactgccagtgcatttcgttaag
gcaagtgaattcttatcttaaaaatgcatgggggggagggcatggtgcct
ctttgtataggaacctgtacatgcgcatgctgtccagaagagggcatctg
gtatcctcttcaatcactctgcctattcctatgagacatggtctggtctt
gagatctgatgtaaaaatccgtcatgagaacaagcatgtagaaaattgct
cattataactggtcccctttaatgaaaagctgtgtgaacaagttcagtgc
acaactgagctgcactgactgagctgtgtaagggtttggctctgtcagag
ctgactccgaggaaataaccaaacatctgaccataaactgcagatgtcgt
atcagtgacacaggcagatggatctccgtgagttcaaggccagcctggtc
tacatctgaggtcatccagggctacatagtgagaacctacctaaaagtaa
aataaataaaataattaacgtgagcatcatcatccagtgagccttctgtc
tctgaccctctctgagctggagtcacaggtgcatgcatgacatcttgttt
gttttgggggtgccgggatctacaaatctgagctcatgattgtacagcaa
acgcttgactaccgagccatgtagcaagccctgtcttctttgtttcttta
aatatggatagaagagaataaaactgcctatgtagtctcatgcataaagc
tgaagttgccagtctagaagtacaaagccattacaaaatggccctggctg
tgggattgaataatggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_46403922_46404469
seq2: B6Ng01-040A20.b_33_580

seq1  GAATTCCTTGGTGCTATTCCCTCTACACTATTCCACTACACTACTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGTGCTATTCCCTCTACACTATTCCACTACACTACTATTTC  50

seq1  TGTCTTGGTGCTCACTGCTCCTATACTCACCCACTGATTTCACATCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGTGCTCACTGCTCCTATACTCACCCACTGATTTCACATCAGGA  100

seq1  AGGAGTCAATGAAGAAATAAAAGGGGAAGGAAATGAGAGAGCGCGGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCAATGAAGAAATAAAAGGGGAAGGAAATGAGAGAGCGCGGGACA  150

seq1  TGGGCTTGTTTGGAGCTATCACGGGTTTCCTTCACAGTTCTACGTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGTTTGGAGCTATCACGGGTTTCCTTCACAGTTCTACGTTTCTA  200

seq1  AATTGTCTTCAGGCAATCTTCATATTTTAGTTTATTTCAGAAAGACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTTCAGGCAATCTTCATATTTTAGTTTATTTCAGAAAGACATAG  250

seq1  CATCTTTGTCATAGTGAATCAGTTTGTCACAATCAATAAAATATTTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGTCATAGTGAATCAGTTTGTCACAATCAATAAAATATTTGGTC  300

seq1  TTGCTAAGAGTTAACAAGGGCTGCTGTACTGACACCTTCATTGCAGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGAGTTAACAAGGGCTGCTGTACTGACACCTTCATTGCAGTCCA  350

seq1  GGTGTTGAGAAGAGCAGATTGGCAAGAGGGTGTTAATTTCTATTTCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGAGAAGAGCAGATTGGCAAGAGGGTGTTAATTTCTATTTCAGTC  400

seq1  TGAGTGATTCCTGACACCACATCAGTGACATTCAGCCATGGTAGCCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATTCCTGACACCACATCAGTGACATTCAGCCATGGTAGCCAAAG  450

seq1  ACAGCAGGGTGCTGGACCTCGGTCCACATTCTCAGTGCTATTCTATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGGTGCTGGACCTCGGTCCACATTCTCAGTGCTATTCTATAGAG  500

seq1  TTCTAGGAAAGGAATAGGTGTCTTGTTAATTCTTTTGGGTGGGGGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAAAGGAATAGGTGTCTTGTTAATTCTTTTGGGTGGGGGGAG  548

seq1: chr11_46546397_46547277
seq2: B6Ng01-040A20.g_67_934 (reverse)

seq1  TCCCATTTATCACTCCCACAGCCCAGGGGCCATCTGTGTAATGGCTTTGT  50
      |||||||  ||| ||||||||||   ||||||| | ||||||||||||||
seq2  TCCCATTATTCAATCCCACAGCC--AGGGCCAT-TTTGTAATGGCTTTGT  47

seq1  ACTTCTAGACTGGCACTCTCCAGCTCTAATGCAATGAGAACTACATAGGC  100
      |||||||||||||||  || ||||| | |||| ||||| |||||||||||
seq2  ACTTCTAGACTGGCA-ACTTCAGCT-TTATGC-ATGAG-ACTACATAGGC  93

seq1  AGTTTTTATTTCTCTACTATCCATATTTAAAAGAAACAAAGAAGACAGGG  150
      ||||||   |||||| |||||||||||| |||||||||||||||||||||
seq2  AGTTTT--ATTCTCTTCTATCCATATTT-AAAGAAACAAAGAAGACAGGG  140

seq1  CTTGCTACATGGCTCGGTAGTTCAAAGCGTTTGCTGTACAATCCTGAGCC  200
      |||||||||||||||||||||   ||||||||||||||||||| |||| |
seq2  CTTGCTACATGGCTCGGTAGT--CAAGCGTTTGCTGTACAATCATGAG-C  187

seq1  TCAGATTTGTAGATCCCGGCACCCCCAAAACAAACAAGATGTCATGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTGTAGATCCCGGCACCCCCAAAACAAACAAGATGTCATGCATG  237

seq1  CACCTGTGACTCCAGCTCAGAGAGGGTCAGAGACAGAAGGCTCACTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGACTCCAGCTCAGAGAGGGTCAGAGACAGAAGGCTCACTGGAT  287

seq1  GATGATGCTCACGTTAATTATTTTATTTATTTTACTTTTAGGTAGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGCTCACGTTAATTATTTTATTTATTTTACTTTTAGGTAGGTTCT  337

seq1  CACTATGTAGCCCTGGATGACCTCAGATGTAGACCAGGCTGGCCTTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTAGCCCTGGATGACCTCAGATGTAGACCAGGCTGGCCTTGAAC  387

seq1  TCACGGAGATCCATCTGCCTGTGTCACTGATACGACATCTGCAGTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGAGATCCATCTGCCTGTGTCACTGATACGACATCTGCAGTTTATG  437

seq1  GTCAGATGTTTGGTTATTTCCTCGGAGTCAGCTCTGACAGAGCCAAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATGTTTGGTTATTTCCTCGGAGTCAGCTCTGACAGAGCCAAACCC  487

seq1  TTACACAGCTCAGTCAGTGCAGCTCAGTTGTGCACTGAACTTGTTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGCTCAGTCAGTGCAGCTCAGTTGTGCACTGAACTTGTTCACAC  537

seq1  AGCTTTTCATTAAAGGGGACCAGTTATAATGAGCAATTTTCTACATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCATTAAAGGGGACCAGTTATAATGAGCAATTTTCTACATGCTT  587

seq1  GTTCTCATGACGGATTTTTACATCAGATCTCAAGACCAGACCATGTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATGACGGATTTTTACATCAGATCTCAAGACCAGACCATGTCTCA  637

seq1  TAGGAATAGGCAGAGTGATTGAAGAGGATACCAGATGCCCTCTTCTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATAGGCAGAGTGATTGAAGAGGATACCAGATGCCCTCTTCTGGAC  687

seq1  AGCATGCGCATGTACAGGTTCCTATACAAAGAGGCACCATGCCCTCCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCGCATGTACAGGTTCCTATACAAAGAGGCACCATGCCCTCCCCC  737

seq1  CCATGCATTTTTAAGATAAGAATTCACTTGCCTTAACGAAATGCACTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATTTTTAAGATAAGAATTCACTTGCCTTAACGAAATGCACTGGC  787

seq1  AGTACTATTGTGTCAATGTGGAATAGGAAGAAAAATCACTAAGGAGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATTGTGTCAATGTGGAATAGGAAGAAAAATCACTAAGGAGGGTT  837

seq1  CATCCTCTTTCTTTGTAAGTCTTAGGAATTC  881
      |||||||||||||||||||||||||||||||
seq2  CATCCTCTTTCTTTGTAAGTCTTAGGAATTC  868