BAC Information

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BAC

Clone NameB6Ng01-043B05
Chromosome11 (Build37)
Map Location 86,407,988 - 86,508,245
singlet/doubletdoublet
Overlap geneTmem49, Ptrh2, Cltc
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687
Downstream geneDhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043B05.bB6Ng01-043B05.g
ACCDH869252DH869253
length1,1861,031
definitionDH869252|Mus musculus domesticus DNA, BAC clone: B6Ng01-043B05, 5' end.DH869253|Mus musculus domesticus DNA, BAC clone: B6Ng01-043B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,507,059 - 86,508,245)(86,407,988 - 86,409,030)
sequence
gaattcaaacaagatattgctgttcttcagttttgtttgtggaatttgaa
attactccaatttaaaataaattactggactgtggaaataacatgtagaa
ttgcagttttaattaaatacatctcaaaccagaatcatggttttcatagt
ttcatactggatactgctggagcattaccgggagccatagagggaaatta
tgaaaaagagatgcattatgtcaattacattcctgtagttatgaaagatt
atacagcagtcagtgaatagtggactccttctcacgtttccagcatttta
atcaagtagcactccagggctttatgcatttcacgtaactaagaaaagta
tgagtgttacactgacttgaaataaaggtatattttttaaaatatcatgg
tatttcttttcaacataaagggctccataatttaaatttttgccatggct
gagaatattgaatttactttgttaacaacttaattatctatagttataga
gcatattgcctagcttctattgctctacaactctcaggctaattaacatc
agcttcacatacacacccttagcaaattagtattactgttaaagtcactt
ttcattcgtcttagtgaaaccgtgaactctcaggctagagctgcactgtg
ttcccagaactctacctactaccgtaaggaatcaagagatatatcagtca
gttcattcttgacttttcctaaacttgtgaatgatgctcttttcccttaa
tagaaacaacttgaaatctcatttattttatgagtacgggtgttttgcct
gtgtaaatgtgcatacaatgcccccagaatccagatgaggggctcagatc
ctctggggtggaagttaagttaccctgtgggtcctaggaattgaacctgg
tcctctggaagaacagtcagtttctctggagaactgagctgtttttctgg
ccttactctattgtttccttgagattttcccacagaattcatcatgtatt
gtcgtttgatgctaggttgccactttaacatccgtatggacaagtcagcg
gggctactgattttcttcttctaattataccaggtattctcagaattcta
ggcgaaataagtttataatttcatagtggtatgggtggtttgtgtcgtcg
tggttggcaatatacatatttgtgtctgaggatcta
gaattcttctcatctatctctattgatattttctctttatgttgctctgg
ctatcctagaacttgctatggagatcaggctggcttctaactcacagaga
ttcgcctgcctctgcctctagattattggattaaaggcatgtatgcagta
ccatgccatgcctagctagcctttatatttctactgtttcttttctcccc
caccccaagcctgcttttaacttcctcttctctccccatgcttgtacatg
gtgcacaccatcatgctcagtagtaatttgtattttctttttccttaatt
ttttttttgtgtatatatgtgtgcccaaatgtatatatgtatgtacaggt
acctaagaaggccagaaaagggcactggatcccatggagatagttacagg
cagttatgtcctatccaatacaggtgctggaaacaaaacagggtctattg
aaaaagtggcaagtgctcttaattgctgagccatctctccagccctgtaa
tttatattttctctctagttttttttttttttttttggctagtatttccc
tcatccaaaaaccacatagtaattccttctattaatgaaagaataggttg
agctggagagatggctcagtggttaagagcactgactgctcttccaaagg
tcctgagttcaaatcccagcaaccacatggtggctcacaaccaccttaat
gagacctgatgccctctcctggggtgtgtgaagacagctacagtgtaatt
acctataataaataaataaattaaaaaaagaataggtttatgtatctaag
aagtagggtaattaaaatgtgtcacgatttcctgaccgccttttgtttta
ccctgtattatctaacaaactggatttttactttaatattcactgaaatg
ctctgatagtgctaacttctaataaaatattcatttctcatcagcagtct
agctatgctgcatccagcatctatgacagaaacatgagagttctgcagat
acacagaaccagaaggagctatcatcactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86507059_86508245
seq2: B6Ng01-043B05.b_43_1228 (reverse)

seq1  TAGATCCTCAGGCACAAATATG-ATA-TGCAAACACACGACG--ACAAAA  46
      ||||||||||| |||||||||| ||| ||| ||| |||||||  ||||| 
seq2  TAGATCCTCAGACACAAATATGTATATTGCCAAC-CACGACGACACAAAC  49

seq1  CACCCATA-CAC-ATGAAATTATAAACTAATCT-GCCTAGTAATTCTGAA  93
      |||||||| ||| ||||||||||||||| || | |||||| ||||||| |
seq2  CACCCATACCACTATGAAATTATAAACTTATTTCGCCTAG-AATTCTG-A  97

seq1  GATTACTTGGTATATATAGAAGAAGAAAATCAGTAG-CCCGCTGACTTGT  142
      || ||| |||||||  |||||||||||||||||||| |||||||||||||
seq2  GAATACCTGGTATAATTAGAAGAAGAAAATCAGTAGCCCCGCTGACTTGT  147

seq1  CCAATACGGATGGTTAAAGTGGCAACCTAGCATCAAACGACAATACATGA  192
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CC-ATACGGAT-GTTAAAGTGGCAACCTAGCATCAAACGACAATACATGA  195

seq1  TGAATTCTTGTTGGGAAAAATCTTCAAGGAAACAATAGAGTAAGGCCAGA  242
      ||||||| |||  || |||||| |||||||||||||||||||||||||||
seq2  TGAATTC-TGT--GGGAAAATC-TCAAGGAAACAATAGAGTAAGGCCAGA  241

seq1  AAAACAGCTCAGTTCTCCAGAGAAACTGACTGTTCTTCCAGAGGACCAGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCTCAGTTCTCCAGAGAAACTGACTGTTCTTCCAGAGGACCAGG  291

seq1  TTCAATTCCTAGGACCCACAGGGTAACTTAACTTCCACCCCAGAGGATCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCTAGGACCCACAGGGTAACTTAACTTCCACCCCAGAGGATCT  341

seq1  GAGCCCCTCATCTGGATTCTGGGGGCATTGTATGCACATTTACACAGGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTCATCTGGATTCTGGGGGCATTGTATGCACATTTACACAGGCA  391

seq1  AAACACCCGTACTCATAAAATAAATGAGATTTCAAGTTGTTTCTATTAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCGTACTCATAAAATAAATGAGATTTCAAGTTGTTTCTATTAAG  441

seq1  GGAAAAGAGCATCATTCACAAGTTTAGGAAAAGTCAAGAATGAACTGACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGCATCATTCACAAGTTTAGGAAAAGTCAAGAATGAACTGACT  491

seq1  GATATATCTCTTGATTCCTTACGGTAGTAGGTAGAGTTCTGGGAACACAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATCTCTTGATTCCTTACGGTAGTAGGTAGAGTTCTGGGAACACAG  541

seq1  TGCAGCTCTAGCCTGAGAGTTCACGGTTTCACTAAGACGAATGAAAAGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCTAGCCTGAGAGTTCACGGTTTCACTAAGACGAATGAAAAGTG  591

seq1  ACTTTAACAGTAATACTAATTTGCTAAGGGTGTGTATGTGAAGCTGATGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACAGTAATACTAATTTGCTAAGGGTGTGTATGTGAAGCTGATGT  641

seq1  TAATTAGCCTGAGAGTTGTAGAGCAATAGAAGCTAGGCAATATGCTCTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCCTGAGAGTTGTAGAGCAATAGAAGCTAGGCAATATGCTCTAT  691

seq1  AACTATAGATAATTAAGTTGTTAACAAAGTAAATTCAATATTCTCAGCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGATAATTAAGTTGTTAACAAAGTAAATTCAATATTCTCAGCCA  741

seq1  TGGCAAAAATTTAAATTATGGAGCCCTTTATGTTGAAAAGAAATACCATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAAATTTAAATTATGGAGCCCTTTATGTTGAAAAGAAATACCATG  791

seq1  ATATTTTAAAAAATATACCTTTATTTCAAGTCAGTGTAACACTCATACTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAAAATATACCTTTATTTCAAGTCAGTGTAACACTCATACTT  841

seq1  TTCTTAGTTACGTGAAATGCATAAAGCCCTGGAGTGCTACTTGATTAAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTTACGTGAAATGCATAAAGCCCTGGAGTGCTACTTGATTAAAA  891

seq1  TGCTGGAAACGTGAGAAGGAGTCCACTATTCACTGACTGCTGTATAATCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAAACGTGAGAAGGAGTCCACTATTCACTGACTGCTGTATAATCT  941

seq1  TTCATAACTACAGGAATGTAATTGACATAATGCATCTCTTTTTCATAATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACTACAGGAATGTAATTGACATAATGCATCTCTTTTTCATAATT  991

seq1  TCCCTCTATGGCTCCCGGTAATGCTCCAGCAGTATCCAGTATGAAACTAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTATGGCTCCCGGTAATGCTCCAGCAGTATCCAGTATGAAACTAT  1041

seq1  GAAAACCATGATTCTGGTTTGAGATGTATTTAATTAAAACTGCAATTCTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCATGATTCTGGTTTGAGATGTATTTAATTAAAACTGCAATTCTA  1091

seq1  CATGTTATTTCCACAGTCCAGTAATTTATTTTAAATTGGAGTAATTTCAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTTCCACAGTCCAGTAATTTATTTTAAATTGGAGTAATTTCAA  1141

seq1  ATTCCACAAACAAAACTGAAGAACAGCAATATCTTGTTTGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAAACAAAACTGAAGAACAGCAATATCTTGTTTGAATTC  1186

seq1: chr11_86407988_86409030
seq2: B6Ng01-043B05.g_68_1098

seq1  GAATTCTTCTCATCTATCTCTATTGATATTTTCTCTTTATGTTGCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCATCTATCTCTATTGATATTTTCTCTTTATGTTGCTCTGG  50

seq1  CTATCCTAGAACTTGCTATGGAGATCAGGCTGGCTTCTAACTCACAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAGAACTTGCTATGGAGATCAGGCTGGCTTCTAACTCACAGAGA  100

seq1  TTCGCCTGCCTCTGCCTCTAGATTATTGGATTAAAGGCATGTATGCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTGCCTCTGCCTCTAGATTATTGGATTAAAGGCATGTATGCAGTA  150

seq1  CCATGCCATGCCTAGCTAGCCTTTATATTTCTACTGTTTCTTTTCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCATGCCTAGCTAGCCTTTATATTTCTACTGTTTCTTTTCTCCCC  200

seq1  CACCCCAAGCCTGCTTTTAACTTCCTCTTCTCTCCCCATGCTTGTACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAAGCCTGCTTTTAACTTCCTCTTCTCTCCCCATGCTTGTACATG  250

seq1  GTGCACACCATCATGCTCAGTAGTAATTTGTATTTTCTTTTTCCTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACCATCATGCTCAGTAGTAATTTGTATTTTCTTTTTCCTTAATT  300

seq1  TTTTTTTTGTGTATATATGTGTGCCCAAATGTATATATGTATGTACAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTGTATATATGTGTGCCCAAATGTATATATGTATGTACAGGT  350

seq1  ACCTAAGAAGGCCAGAAAAGGGCACTGGATCCCATGGAGATAGTTACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAAGGCCAGAAAAGGGCACTGGATCCCATGGAGATAGTTACAGG  400

seq1  CAGTTATGTCCTATCCAATACAGGTGCTGGAAACAAAACAGGGTCTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGTCCTATCCAATACAGGTGCTGGAAACAAAACAGGGTCTATTG  450

seq1  AAAAAGTGGCAAGTGCTCTTAATTGCTGAGCCATCTCTCCAGCCCTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGGCAAGTGCTCTTAATTGCTGAGCCATCTCTCCAGCCCTGTAA  500

seq1  TTTATATTTTCTCTCTAGTTTTTTTTTTTTTTTTTTGGCTAGTATTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTCTCTCTAGTTTTTTTTTTTTTTTTTTGGCTAGTATTTCCC  550

seq1  TCATCCAAAAACCACATAGTAATTCCTTCTATTAATGAAAGAATAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAAAAACCACATAGTAATTCCTTCTATTAATGAAAGAATAGGTTG  600

seq1  AGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGG  650

seq1  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCTTAAT  700

seq1  GAGACCTGATGCCCTCTCCTGGGGTGTGTGAAGACAGCTACAGTGTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGATGCCCTCTCCTGGGGTGTGTGAAGACAGCTACAGTGTAATT  750

seq1  ACCTATAATAAATAAATAAATTAAAAAAAGAATAGGTTTATGTATCTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAATAAATAAATAAATTAAAAAAAGAATAGGTTTATGTATCTAAG  800

seq1  AAGTAGGGTAATTAAAATGTGTCAGGAATTCCTGACCGCCTTTTGTTTTA  850
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  AAGTAGGGTAATTAAAATGTGTCACGATTTCCTGACCGCCTTTTGTTTTA  850

seq1  CCCTGTATTATCTAACAAACTGGATTTTTACTTTAATATTCCACTGAAAT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCTGTATTATCTAACAAACTGGATTTTTACTTTAATATT-CACTGAAAT  899

seq1  GCTCTGATAGTGCTAACTTCCTAATAAAATATCCATTTCTCATCAGCAGT  950
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  GCTCTGATAGTGCTAACTT-CTAATAAAATATTCATTTCTCATCAGCAGT  948

seq1  CTAGCTATGCTGCATCCCAGCATCTATGACAGAAACATGGAAGAGTTTCT  1000
      ||||||||||||||| |||||||||||||||||||||||  |||| ||||
seq2  CTAGCTATGCTGCAT-CCAGCATCTATGACAGAAACATG--AGAG-TTCT  994

seq1  GCAGATTACCACAGACACAAGAAGGGAAGCTATCATCAACTGC  1043
      ||||||   |||||| || ||||||  |||||||||| |||||
seq2  GCAGAT--ACACAGA-ACCAGAAGG--AGCTATCATC-ACTGC  1031