BAC Information

Click to search

BAC

Clone NameB6Ng01-043F22
Chromosome11 (Build37)
Map Location 99,443,492 - 99,501,191
singlet/doubletdoublet
Overlap geneOTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik
Upstream geneOrmdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik
Downstream geneKrtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043F22.bB6Ng01-043F22.g
ACCDH869456DH869457
length1,1311,160
definitionDH869456|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F22, 5' end.DH869457|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,500,069 - 99,501,191)(99,443,492 - 99,444,672)
sequence
gaattccaagctcaccttcggcttcaaggattttctaggaaccattggaa
cactggtggaggcttagctatgtcaaaaatcaattcttaaaggcacttat
aataaaacaataatgaaagagagcacacagatccagacgccagactaacg
cggggacaggttttgagtatatgggctatgagaatgccaaggttccagga
ggctgtttccatgaaactctttgcctcatgactgctttcaggctttaggc
ctatcaagcagactgcactggagtggttgtagcatcttcccactttcatg
catcttttcagggaacatatttctcccttttaagcaactgatctttttct
aatctatttttaagtttaaataataaattctatttatttagaggtaattc
ctccatctcaaatatcaatgagattttttaagttatttgattcacccttt
tctctctttttatttaagctttttttcatacaaaatattttgatattctt
cctttattgtgttcctttcatatcttcccctcacaccaaactttgtgtcc
ttcctctctaaacaaacaaaaaataagctcatgtggtcagggcagacaga
ccacagctgaagcaatgtcagcctggtcccacacagcacaggcagggcat
aacactcctgagacaatcccagacatccagaagtccgggatgccactaag
atgaacaagtaagttgtggagagatggaagagaaagagaagcagaaggat
gtgtgcacaatgaggagaggcagaaccggagactcaagagtactgagggg
cagcatgatgtgagcagccagccacatacagccatagtgaggtcctgccg
gtcccccactgcaacccaggactatatctgcggggtttgtggccccacag
cagctaggatatgttaccaccaaacaccaggcaggcatgcctgatctggg
ctgcatctggggccatgttaatatctgagggctatatggagctgacccac
ccctcactggcactgtgagagagtggcctgcccacagcagctacagctcc
tcagagatgggcatctttctgcacctcactgagcagcacagtagctgacc
tggtgggagggctcaggtgagccaaccaagg
gaattcagcagttatacctcaaagctgcttgctctactcttatctagtac
agatgtatccctcatacacccagtaagtgcaggtgaatactgggagttga
agtttatacagctggagatcagcagaatggagttaggccaagttgtagga
actgaacccaagttctattggaaatggtattggcagatatttagcaaaag
agttagtagataataatctagtttctttatgttgtgcatggataaagaaa
aatcatctactgtattaaatgggacaaggtttgagttggtataaaaagtc
catgaagggtaactctattggtctgggtccattttaataaacattcacac
atttaaatagccatgaatattatttaatgcacagaacattttattagcag
acgattcaaacataagttaattttcatacaaccattttgctttagattat
gtgcctatgcctgaagattactatcatctatagatgggcagcttaaaatt
agaagatgcacagaaatctattcacttgtgcacaaaacactttatttgag
agcatcggggtctcttcaagtggaaagcttgatggaagacgtgtggggac
cgaggactagggaataaagtccacacctcactggaatgatgtactgctgc
atcctttgtgcatcatctaagcaaagaagggtccctggaacatgctgatt
gagacgcgtgttcagtggactaattccagcacgcctttggggatcctgat
gaagagttccacctccaggaacaggttaacaacatgaagatacttagcat
ccaccacacagaacacatcctcagcagtccacacaattcttcagggcttt
ctgttgcatttctaactatcaggaacctggttcttaacagctgggctcag
agcagctgggcttagagcagctgggctcacaacagtggcagcagcagctg
ggcggcagcaggactgtccacagtagatgggcgcagcagagcctgggcat
ggtgcagctggcagcagtggggtggtgcactcaccacacagcaggggcag
cagtgcctcacacgcagtcaggcggcaccatctaacacgcagctcagctt
ccactgcacccttccttggcactgcagtccaaagcaacttgtctgacaac
agcttggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99500069_99501191
seq2: B6Ng01-043F22.b_64_1173 (reverse)

seq1  CCTTGGTGTGGCTCACCTGAGCCCTCACCACCAGGGTCAGCTTTACTGTG  50
      ||||||| |||||||||||||||||| |||||| |||||||  |||||||
seq2  CCTTGGT-TGGCTCACCTGAGCCCTC-CCACCA-GGTCAGC--TACTGTG  45

seq1  CTGCTCAGTTGAGGTGCAG-AAGATGCCCATTCTCCTGA-GAGCTGTAGC  98
      |||||||| |||||||||| |||||||||| ||| |||| ||||||||||
seq2  CTGCTCAG-TGAGGTGCAGAAAGATGCCCA-TCT-CTGAGGAGCTGTAGC  92

seq1  TGCTGTGGGGCAGGGCCAACTCTCTCACAGTGCCCAGGTGAGGGGTGGGG  148
      |||||| |||||||  | ||||||||||||||||   ||||||||| |||
seq2  TGCTGT-GGGCAGG--CCACTCTCTCACAGTGCC--AGTGAGGGGT-GGG  136

seq1  TCAGCTCCATATAGCCCTCAGATATTAACATGGCCCCAGATGGCAGCCCA  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAGCTCCATATAGCCCTCAGATATTAACATGGCCCCAGAT-GCAGCCCA  185

seq1  GATCAGGCATGCCTGCCTGGTGTTTGGTGGTAACATATCCTAGCTGCTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGCATGCCTGCCTGGTGTTTGGTGGTAACATATCCTAGCTGCTGT  235

seq1  GGGGCCACAAACCCCGCAGATATAGTCCTGGGTTGCAGTGGGGGACCGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCACAAACCCCGCAGATATAGTCCTGGGTTGCAGTGGGGGACCGGC  285

seq1  AGGACCTCACTATGGCTGTATGTGGCTGGCTGCTCACATCATGCTGCCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCACTATGGCTGTATGTGGCTGGCTGCTCACATCATGCTGCCCC  335

seq1  TCAGTACTCTTGAGTCTCCGGTTCTGCCTCTCCTCATTGTGCACACATCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTCTTGAGTCTCCGGTTCTGCCTCTCCTCATTGTGCACACATCC  385

seq1  TTCTGCTTCTCTTTCTCTTCCATCTCTCCACAACTTACTTGTTCATCTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCTCTTTCTCTTCCATCTCTCCACAACTTACTTGTTCATCTTA  435

seq1  GTGGCATCCCGGACTTCTGGATGTCTGGGATTGTCTCAGGAGTGTTATGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCCCGGACTTCTGGATGTCTGGGATTGTCTCAGGAGTGTTATGC  485

seq1  CCTGCCTGTGCTGTGTGGGACCAGGCTGACATTGCTTCAGCTGTGGTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGTGCTGTGTGGGACCAGGCTGACATTGCTTCAGCTGTGGTCTG  535

seq1  TCTGCCCTGACCACATGAGCTTATTTTTTGTTTGTTTAGAGAGGAAGGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTGACCACATGAGCTTATTTTTTGTTTGTTTAGAGAGGAAGGAC  585

seq1  ACAAAGTTTGGTGTGAGGGGAAGATATGAAAGGAACACAATAAAGGAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTGGTGTGAGGGGAAGATATGAAAGGAACACAATAAAGGAAGA  635

seq1  ATATCAAAATATTTTGTATGAAAAAAAGCTTAAATAAAAAGAGAGAAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAATATTTTGTATGAAAAAAAGCTTAAATAAAAAGAGAGAAAAG  685

seq1  GGTGAATCAAATAACTTAAAAAATCTCATTGATATTTGAGATGGAGGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATCAAATAACTTAAAAAATCTCATTGATATTTGAGATGGAGGAAT  735

seq1  TACCTCTAAATAAATAGAATTTATTATTTAAACTTAAAAATAGATTAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTAAATAAATAGAATTTATTATTTAAACTTAAAAATAGATTAGAA  785

seq1  AAAGATCAGTTGCTTAAAAGGGAGAAATATGTTCCCTGAAAAGATGCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAGTTGCTTAAAAGGGAGAAATATGTTCCCTGAAAAGATGCATG  835

seq1  AAAGTGGGAAGATGCTACAACCACTCCAGTGCAGTCTGCTTGATAGGCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGAAGATGCTACAACCACTCCAGTGCAGTCTGCTTGATAGGCCT  885

seq1  AAAGCCTGAAAGCAGTCATGAGGCAAAGAGTTTCATGGAAACAGCCTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGAAAGCAGTCATGAGGCAAAGAGTTTCATGGAAACAGCCTCCT  935

seq1  GGAACCTTGGCATTCTCATAGCCCATATACTCAAAACCTGTCCCCGCGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTTGGCATTCTCATAGCCCATATACTCAAAACCTGTCCCCGCGTT  985

seq1  AGTCTGGCGTCTGGATCTGTGTGCTCTCTTTCATTATTGTTTTATTATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCGTCTGGATCTGTGTGCTCTCTTTCATTATTGTTTTATTATAA  1035

seq1  GTGCCTTTAAGAATTGATTTTTGACATAGCTAAGCCTCCACCAGTGTTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTAAGAATTGATTTTTGACATAGCTAAGCCTCCACCAGTGTTCC  1085

seq1  AATGGTTCCTAGAAAATCCTTGAAG  1123
      |||||||||||||||||||||||||
seq2  AATGGTTCCTAGAAAATCCTTGAAG  1110

seq1: chr11_99443492_99444672
seq2: B6Ng01-043F22.g_66_1225

seq1  GAATTCAGCAGTTATACCTCAAAGCTGCTTGCTCTACTCTTATCTAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGTTATACCTCAAAGCTGCTTGCTCTACTCTTATCTAGTAC  50

seq1  AGATGTATCCCTCATACACCCAGTAAGTGCAGGTGAATACTGGGAGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATCCCTCATACACCCAGTAAGTGCAGGTGAATACTGGGAGTTGA  100

seq1  AGTTTATACAGCTGGAGATCAGCAGAATGGAGTTAGGCCAAGTTGTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATACAGCTGGAGATCAGCAGAATGGAGTTAGGCCAAGTTGTAGGA  150

seq1  ACTGAACCCAAGTTCTATTGGAAATGGTATTGGCAGATATTTAGCAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCCAAGTTCTATTGGAAATGGTATTGGCAGATATTTAGCAAAAG  200

seq1  AGTTAGTAGATAATAATCTAGTTTCTTTATGTTGTGCATGGATAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTAGATAATAATCTAGTTTCTTTATGTTGTGCATGGATAAAGAAA  250

seq1  AATCATCTACTGTATTAAATGGGACAAGGTTTGAGTTGGTATAAAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTACTGTATTAAATGGGACAAGGTTTGAGTTGGTATAAAAAGTC  300

seq1  CATGAAGGGTAACTCTATTGGTCTGGGTCCATTTTAATAAACATTCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGGTAACTCTATTGGTCTGGGTCCATTTTAATAAACATTCACAC  350

seq1  ATTTAAATAGCCATGAATATTATTTAATGCACAGAACATTTTATTAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATAGCCATGAATATTATTTAATGCACAGAACATTTTATTAGCAG  400

seq1  ACGATTCAAACATAAGTTAATTTTCATACAACCATTTTGCTTTAGATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTCAAACATAAGTTAATTTTCATACAACCATTTTGCTTTAGATTAT  450

seq1  GTGCCTATGCCTGAAGATTACTATCATCTATAGATGGGCAGCTTAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTATGCCTGAAGATTACTATCATCTATAGATGGGCAGCTTAAAATT  500

seq1  AGAAGATGCACAGAAATCTATTCACTTGTGCACAAAACACTTTATTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGCACAGAAATCTATTCACTTGTGCACAAAACACTTTATTTGAG  550

seq1  AGCATCGGGGTCTCTTCAAGTGGAAAGCTTGATGGAAGACGTGTGGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCGGGGTCTCTTCAAGTGGAAAGCTTGATGGAAGACGTGTGGGGAC  600

seq1  CGAGGACTAGGGAATAAAGTCCACACCTCACTGGAATGATGTACTGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGACTAGGGAATAAAGTCCACACCTCACTGGAATGATGTACTGCTGC  650

seq1  ATCCTTTGTGCATCATCTAAGCAAAGAAGGGTCCCTGGAACATGCTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGTGCATCATCTAAGCAAAGAAGGGTCCCTGGAACATGCTGATT  700

seq1  GAGACGCGTGTTCAGTGGACTAATTCCAGCACGCCTTTGGGGATCCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGCGTGTTCAGTGGACTAATTCCAGCACGCCTTTGGGGATCCTGAT  750

seq1  GAAGAGTTCCACCTCCAGGAACAGGTTAACAACATGAAGATACTTAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTCCACCTCCAGGAACAGGTTAACAACATGAAGATACTTAGCAT  800

seq1  CCACCACACAGAACACATCCTCAGCAGTCCACACAATTCTTCAGGGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACAGAACACATCCTCAGCAGTCCACACAATTCTTCAGGGCTTT  850

seq1  CTGTTGCATTTCTAACTATTCAGGAACCTGGTTCTTAACAGCTGGGCTCA  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGTTGCATTTCTAACTA-TCAGGAACCTGGTTCTTAACAGCTGGGCTCA  899

seq1  GAGCAGCTGGGCTTAGAGCAGCTGGGCTCACAACAGTGGCAGCAGCAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGCAGCTGGGCTTAGAGCAGCTGGGCTCACAACAGTGGCAGCAGCA-GC  948

seq1  TGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCT  1000
      ||||||||||||||||||||||||||| ||||||| |||||||   ||||
seq2  TGGGCGGCAGCAGGACTGTCCACAGTA-GATGGGC-GCAGCAG--AGCCT  994

seq1  GGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACACAG  1050
      |||||||||||||||||||||||  |||||  ||||| ||||||||||||
seq2  GGGCATGGTGCAGCTGGCAGCAG--TGGGGTGGTGCA-CTCACCACACAG  1041

seq1  CAGGGGGGCAGGCAGGTGCCCTCCACACGGCAGTCAGGGCGGCACCATCT  1100
      ||  |||||| ||| |||||   ||||| ||||||| |||||||||||||
seq2  CA--GGGGCA-GCA-GTGCC--TCACAC-GCAGTCA-GGCGGCACCATCT  1083

seq1  AACACGGCAGCTCAGGCCTCCACTGCCACCCTCCTGGCCACTGCCAGTTC  1150
      ||||| |||||||| || ||||||||  || |||| | ||||| ||| ||
seq2  AACAC-GCAGCTCA-GCTTCCACTGCACCCTTCCTTGGCACTG-CAG-TC  1129

seq1  CACAGCAGCTGGTCTGACAGCAGCTGGGCTG  1181
      || |||| || |||||||| ||||| |||||
seq2  CAAAGCAACTTGTCTGACAACAGCTTGGCTG  1160