BAC Information

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BAC

Clone NameB6Ng01-044G19
Chromosome11 (Build37)
Map Location 42,407,473 - 42,408,559
singlet/doubletsinglet
Overlap geneGabrb2
Upstream geneGabrg2, Gabra1, Gabra6
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044G19.bB6Ng01-044G19.g
ACCDH870183DH870184
length6571,078
definitionDH870183|Mus musculus domesticus DNA, BAC clone: B6Ng01-044G19, 5' end.DH870184|Mus musculus domesticus DNA, BAC clone: B6Ng01-044G19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaatagaggaatctcaaatggccgagaaacaaaaaataaatgt
tcaacatccttattcaccgcagaaatgcaaaacaaaactgctttgtgatt
acattgtatgctcaccagaatgcataagataaaataaacaagtgattgct
tcagctcatgaggatgtggagctaggggaacactcccctattgctggtgg
gagtgcaaatctgtacagccaatttagaaatcaatatgatggcttctcag
aaaatttgtactctatctgcctcaagatccagttatatcaagcttgggca
tcgtctcaaacatgctccacactgacattcgctcaactatgttcacgggt
gctttagcatgactgttcataacagtcacaaaccggaaataattcatata
tctctcaagtgaagaatggataaagaaaatattattcagttgttttaaaa
aatgacatatgacatttgaaggtaaatgggtccaactacaaaaaaaaaaa
aaaatcatcttgagtgaggcgacccagaaccagaaatgcaaacatgaaac
atgatttgtattcacttataagtagatattagctgttagtaaataataat
taagctacaatccacagacccagaaaagttaggtaaataggggtgggagg
ggtggga
gaattctctctctctcctctctcctttctctcctctccctcatctccccc
tctctgcccctcctcccaagtggtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtggccaaacatggatgccttcctttcctcacacagaattttgcggtg
tttaagatgggacttttcctaataaaagagttcagtcatgagatttctaa
gatctgattcagtgttaaatcaattaaacacaaattacagctcttccatg
tcaaaatcagttaatggtagaactgttggtaatgaaattggtttcatcag
tttgatagtcttatcaaaacatattttgtataataatgcttgcataattg
ctcaatttgtctccatgcttcttcacctgctgaatgctccttttatctcc
tatcccagcacagagatgtactatataatatatgcatacataaaaaattt
tctgatggtttattcatgtttcaagatagcacgtagagggcaagagacag
agtcacgatgctgggacatccttttttgtcttagttcatcatatgcctaa
ctttgtttttctatcatagcatcagatgtgaataaatcacatttagtaaa
catttaatgcaaattgtatgacctcttgctcagatttctctatttacatt
tctgactaatcccttttagaattgggaattgtttggcttcaccataagat
cccgatacagtcatttacactcatagaaaggccattcatttctcattcaa
aaacatttgcatctaacatgtgctgacacagtgaggtgctgaagatgcat
ttctccttttctgaaatacattctagcagaaaatatagatagagtcttaa
aagcaaggaaatggaagtctccttgacatccaccaaccgaccagatatag
aaatgcatccatatacacaatggaacttattcaactgcaaaaaaagaaat
gaaaatagagaaaagtagactaatctggaactaatattaagggaagtctt
ggaaagaaaactgcagattttttaatcttatgggaccctatactgatatg
aattatgctgtttgtgtgtgaatagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42407473_42408559
seq2: B6Ng01-044G19.g_66_1143

seq1  GAATTCTCTCTCTCTCCTCTCTCCTTTCTCTCCTCTCCCTCATCTCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTCTCCTCTCTCCTTTCTCTCCTCTCCCTCATCTCCCCC  50

seq1  TCTCTGCCCCTCCTCCCAAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCCCTCCTCCCAAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100

seq1  GTGTGGCCAAACATGGATGCCTTCCTTTCCTCACACAGAATTTTGCGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCAAACATGGATGCCTTCCTTTCCTCACACAGAATTTTGCGGTG  150

seq1  TTTAAGATGGGACTTTTCCTAATAAAAGAGTTCAGTCATGAGATTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGGGACTTTTCCTAATAAAAGAGTTCAGTCATGAGATTTCTAA  200

seq1  GATCTGATTCAGTGTTAAATCAATTAAACACAAATTACAGCTCTTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATTCAGTGTTAAATCAATTAAACACAAATTACAGCTCTTCCATG  250

seq1  TCAAAATCAGTTAATGGTAGAACTGTTGGTAATGAAATTGGTTTCATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATCAGTTAATGGTAGAACTGTTGGTAATGAAATTGGTTTCATCAG  300

seq1  TTTGATAGTCTTATCAAAACATATTTTGTATAATAATGCTTGCATAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGTCTTATCAAAACATATTTTGTATAATAATGCTTGCATAATTG  350

seq1  CTCAATTTGTCTCCATGCTTCTTCACCTGCTGAATGCTCCTTTTATCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTGTCTCCATGCTTCTTCACCTGCTGAATGCTCCTTTTATCTCC  400

seq1  TATCCCAGCACAGAGATGTACTATATAATATATGCATACATAAAAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGCACAGAGATGTACTATATAATATATGCATACATAAAAAATTT  450

seq1  TCTGATGGTTTATTCATGTTTCAAGATAGCACGTAGAGGGCAAGAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGTTTATTCATGTTTCAAGATAGCACGTAGAGGGCAAGAGACAG  500

seq1  AGTCACGATGCTGGGACATCCTTTTTTGTCTTAGTTCATCATATGCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACGATGCTGGGACATCCTTTTTTGTCTTAGTTCATCATATGCCTAA  550

seq1  CTTTGTTTTTCTATCATAGCATCAGATGTGAATAAATCACATTTAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTCTATCATAGCATCAGATGTGAATAAATCACATTTAGTAAA  600

seq1  CATTTAATGCAAATTGTATGACCTCTTGCTCAGATTTCTCTATTTACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATGCAAATTGTATGACCTCTTGCTCAGATTTCTCTATTTACATT  650

seq1  TCTGACTAATCCCTTTTAGAATTGGGAATTGTTTGGCTTCACCATAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTAATCCCTTTTAGAATTGGGAATTGTTTGGCTTCACCATAAGAT  700

seq1  CCCGATACAGTCA-TTACACTCATAGAAAGGCCATTCATTTCTCATTCAA  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCGATACAGTCATTTACACTCATAGAAAGGCCATTCATTTCTCATTCAA  750

seq1  AAACATTTGCATCTAACATGTGCTGACACAGTGAGGTGCTGAAGATGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGCATCTAACATGTGCTGACACAGTGAGGTGCTGAAGATGCAT  800

seq1  TTCTCCTTTTCTGAAATACATTCTAGCAGAAAATATAGATAAGAGTCTTA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTCCTTTTCTGAAATACATTCTAGCAGAAAATATAGAT-AGAGTCTTA  849

seq1  AAAGCAAGGAAATGGAAGTCTCCTTGACATCCACCAACCGACCAGATAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGCAAGGAAATGGAAGTCTCCTTGACATCCACCAACCGACCAGAT-AT  898

seq1  AGAAATGCAGTCCATATACACAATGGAACTTATTCAACTGCAAAAAAAAG  949
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  AGAAATGCA-TCCATATACACAATGGAACTTATTCAACTGC-AAAAAAAG  946

seq1  AAATGAAAATAGAGGAAAAGTAGACTAATCTGGAACTTATATTAAGGGAA  999
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  AAATGAAAATAGA-GAAAAGTAGACTAATCTGGAACTAATATTAAGGGAA  995

seq1  GTTCTTGGAAAGAAAAATTGCCAGATTTTTTAATCTCATGGGGACCCTAA  1049
      | |||||||||||||| |   ||||||||||||||| || ||||||||| 
seq2  G-TCTTGGAAAGAAAACT--GCAGATTTTTTAATCTTAT-GGGACCCTAT  1041

seq1  CTTGATATGTATATATGCGTGTATGTGTGTGAAT-GAAA  1087
        ||||||| || ||||| ||| ||||||||||| ||||
seq2  ACTGATATGAAT-TATGC-TGTTTGTGTGTGAATAGAAA  1078